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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1594 fasta sequence
[CCGCACGCAACGCCAATCCTTCCTTCCCCTTCTTCTCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC-GGTTTCACCGAGTGA-GGTTGAGAGTCTCCTTAGGGGCACTGAC-GGCAAAGAGCACCAGAAGGAGCTTTC-TGGCCAAGATGCAGTTTC-TGCCGAAGGTGA-TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTCATCATCTCGTTACAATCCAATTGATGCTAACAATGAGAAGAAAACTGAGGAGCCAACTGTG-CAAAATGT-GAACCGTGTCATT-GATTCAT--CCAAGGTTGTTGCATCTAGTGA-ACAAAACAAACCTGATGATTCT-GAATTT-CCACACGAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCC-AGC-AGCAATGAGAAAATTAACC-A-AGCTGTAGGACCGTTGAATCGCATCAA-GGACA-TCC--TTGTTGCC-AACAATCACCCAGCTCC-AGCTATCCATGGACA-TGCTCG-A-TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC-TCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTT-CAGGTTGCTG-CAGAAAACTTG-ATATATATATATATATATGATCATTTAGGTTGATGATGTTTTTGGTCTGTCTGTGTTGTGTGATCCTGCTTATATTGTCAACACTTACGTTTGATTTCCCAAGAACAGTTTAG-CAGAAGCTGTAACTCGATGAGTCAGGCTTTCAGATACCAAAGCTTTGATTACATCACATATTGTAGTATTGTCTGAAGCCACTACTGGGTCTCTTTTTAAAACTGTGCTATATTCCATTTTGTATTACTAGCATATCATGAATAAATACATAATTACCCCACTTTTAAAAAAAAAAA]
[+] EMBL C97634 [CCGCACGCAACGCCAATCCTTCCTTCCCCTTCTTCTCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATAATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGNCCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GG TTCACCGAGTTA GGTTGANAATCTCCTTAGGGGNACTTAC GGGAAAAAG ]
[+] EMBL AK071088 [ GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAAAGAGCACCAGAAGGAGCTTTC TGGCCAAGATGCAGTTTC TGCCGAAGGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTCATCATCTCGTTACAATCCAATTGATGCTAACAATGAGAAGAAAACTGAGGAGCCAACTGTG CAAAATGT GAACCGTGTCATT GATTCAT CCAAGGTTGTTGCATCTAGTGA ACAAAACAAACCTGATGATTCT GAATTT CCACACGAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCC AGC AGCAATGAGAAAATTAACC A AGCTGTAGGACCGTTGAATCGCATCAA GGACA TCC TTGTTGCC AACAATCACCCAGCTCC AGCTATCCATGGACA TGCTCG A TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC TCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTT CAGGTTGCTG CAGAAAACTTG TATATATATATATATATGATCATTTAGGTTGATGATGTTTTTGGTCTGTCTGTGTTGTGTGATCCTGCTTATATTGTCAACACTTACGTTTGATTTCCCAAGAACAGTTTAG CAGAAGCTGTAACTCGATGAGTCAGGCTTTCAGATACCAAAGCTTTGATTACATCACATATTGTAGTATTGTCTGAAGCCACTACTGGGTCTCTTTTTAAAACTGTGCTATATTCCATTTTGTATTACTAGCATATCATGAATAAATACA ]
[+] EMBL CF323589 [ gGAGAGAGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGTTCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAAAGAGCACCAGAAGGAGCTTTC TGGCCAAGATGCAGTTTC TGCCGAAGGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCC ]
[+] EMBL OSC101361 [ AGAGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTCGGGTTTCACCGAGTGAGGGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAA ]
[+] EMBL C26410 [ TTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATNATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGACGGGCAAAGAGCACCAGAAGGAGCTTTCTTGGCCAAGATGCAGTTTCTTGCCGNAGGTGATTGACGGAAAAT ]
[+] EMBL AU076045 [ TTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAAAGAGCACCAGAAGGAGCTTTC TGGCCAAGATGCAGTTTC TGCCGAA GTGA TGACGAAAAATTCCAGGACACCTGTG ]
[+] EMBL CB637274 [ TCGCCTGCTTTCCTCACTCGCGATCGCGACTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTCTCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACCTGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGGGGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAAAGAGCACCAGAAGGAGCTTTC TGGCCAAGATGCAGTTTC TGCCGAAGGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTCATCATCTCGTTACAATCCAATTG ]
[+] EMBL CA766258 [ agtnAGGGATATGACACAAAAGGGGATGATT AGCTGCAGCACTGTTGATGTCTGGTC TTTCTC GGTTTCACCGAGTGA GGTTGAGAGTCTCCTTAGGGGCACTGAC GGCAAAGAGCACCAGAAGGAGCTTTC TGGCCAAGATGCAGTTTC TGCCGAAGGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTCATCATCTCGTTACAATCCAATTGATGCTAACAATGAGAAGAAAACTGAGGAGCCAACTGTG CAAAATGT GAACCGTGTCATT GATTCAT CCAAGGTTGTTGCATCTAGTGA ACAAAACAAACCTGATGATTCT GAATTT CCACACGAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAANGGCAAGTTGCAGCATCAGCCGGTCAAANTGTATCCC AGC AGCAATGAGAAAATTAACC A AGCTGTAGGACCGTTGAATCGCATCAA GGACATTCC TTGGTGGC NACAATCACCCAGCTTC AGCTNTNCATGGACA TGCTCG ANTGGAGCTGATTATGCTCACCAAGTCCCGNCNACATGC TTAGNTTATGAAACATCTNCTaa ]
[+] EMBL CF196946 [ CCGAAGGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTCATCATCTCGTTACAATCCAATTGATGCTAACAATGAGAAGAAAACTGAGGAGCCAACTGTG CAAAATGT GAACCGTGTCATT GATTCAT CCAAGGTTGTTGCATCTAGTGA ACAAAACAAACCTGATGATTCT GAATTT CCAnnnnna ]
[+] EMBL AU062676 [ gcgnaGTGA TGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAAGGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACATGGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTNTCATCATCTCGTTACAATCCAATTGATGNTAACAATGAGAAGAAAACTGAGGAGCCAACTGTG CAAAATGT GAACCGTGTCATT GATTCAT CCAAGGTTGTTGCATCTAGTGA ACAAAACAAACCTGATGATTCT GAATTT NCACACGNAGCTTCATGGANGNAGCAACTNTTATCACTGTACAAGAATGTNAGG AAAGC ACAAATNCTGG CCATNGNTGTTG TACT CTTTTGTGGGNG NACATGTTTT ]
[+] EMBL AU092015 [ GTGCCAAAATGTGGANCCGTGTCATTGGATTCCTTCCCAAGGTTGTTGCATCTAGTGANCCAAAACAACCCTGATGATTCTGGAATTTCCCACACGAAGCTTCATGGAAGAAGCAACTCTTATCNCTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCC AGC AGCAATGAGAAAATTAACC A AGCTGTAGGACCGTTGAATCGCATCAA GGACA TCC TTGTTGCC AACAATCACCCAGCTCC AGCTATCCATGGACA TGCTCG A TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC TCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTG CCTTT CAGGTTGCTG CAGAAAACTTGTATATATATATATATATATGATCATTTAGGTTGATGAaaaaa ]
[+] EMBL BI805124 [ TTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCC AGC AGCAATGAGAAAATTAACC ACAGCTGTAGGACCGTTGAATCGCATCAA GGACA TCC TTGTTGCC AACAATCACCCAGCTCC AGCTATCCATGGACA TGCTCG A TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC TCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTC ATTGCAGTGCCCTTT CAGGTTGCTG CAGAAAACTTGTATATATATATATATATATGATCATTTAGGTTGATGATGTTTTTaaaaa ]
[-] EMBL D42943 [ CAGACGGCNAAATTGTATCCCNAGCAANCAATGAGNAAATTANCCAA AGCTGTAGGACCGTTNAANCGCATCAAGGGACA ACCCATGGTTGCCNAACAANCNCCCAGCNCCNAGCTACCCATGGACATTGCTCGAA TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCNNCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTTNCAGGTTGCTGNCAGAAA ]
[+] EMBL AU108560 [ CC AGC AGCAATGAGAAAATTAACC A AGCTGTAGGACCGTTGAATCGCATCAA GGACA TCC TTGTTGCC AACAATCACCCAGCTCC AGCTATCCATGGACA TGCTCG A TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC TCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTG CCTTT CAGGTTGCTG CAGAAAANTNGNATATATATATATATATATGATCATTTAGGTTGATGATGTTTTTGGTCTGTCTGTGTTGTGTGATCCTGCTTATATTGTCAACACTTACGTTTGATTTCCCAAGAACAGTTTAG CAGAAGCTGTAACTCGATGAGTCAGGCTTTCAGATACCAAAGCTTTGATTACATCACATATTGTAGTATTGTCTGAAGCCACTACTGGGTCTCTTTTTAAAACTGTGCTATATTCCATTTTGTATTACTAGCATATCATGAATAAATACATAATTACCCCACTTTTAAAAAAAAAAA]
[+] EMBL AU166538 [ GC AGCAATGAGAAAATTAACC A AGCTGTAGGACCGTTGAATCGCATCAA GGACA TCC TTGTTGCC AACAATCACCCAGCTCC AGCTATCCATGGACA TGCTCG A TTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGC TCAGTTTATGAGACATCTCCTGAATATGNACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTACTCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGNATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTT CAGGTTGCTG CAGAAAACTTGTATATATATATATATATATGATCATTTAGGTTGATGAaaaaaaaaa ]
[+] EMBL BI811754 [ GCCCACATGC TCCGTTTATGAGACATCTCCTAAATATGTACCCCCTTGAGTCATCATCATCCGTGAAGAATGAATGCCCTGGGGCATCATCTACTCCATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCCAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCCACTGCCGTGCCCTTT CCGGTTGCTG CAGAAAACTTG TATATATATATATGATCCTTTAGGTTGATGATGTTTTTGGTCTGTCTGTGTTGTGTGATCCTGCTTATATTGTCCACACTTACGTTTGATTTCCCCAGAACCGTTTAGCCAGAAGCTGTAACTCGAaaaaaaaaa ]
consensusID : consensus_15637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 699 fasta sequence
[CAAATGTGACCCGTGTCCATT-GATTCAT-CCAAGNTTGTTGCATCNTAGTGAAC--AAAACAAACCTGATGATTCTGGAATTTCCA-CAC-GAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCCAGCAGCAATGAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGA-GCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCA-TCTACTCA-A-TACTGAAAATCGTCTG-GGTG-TTTATG-CGTTGAAGTTATGTAATTGA-TTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAACTGCAGTGCCCTTTCAGGTTGCTGCAGAAAACTTG------TATATATATATATGATCATTTAGGTTGAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU076046 [CAAATGTGACCCGTGTCCATT GATTCAT CCAAGNTTGTTGCATCNTAGTGAAC AAAACAAACCTGATGATTCTGGAATTTCCA CAC GAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCCAGCAGCAATGAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGA GCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCA TCTACTCA A TACTGAAAATCGTCTG GGTG TTTATG CGTTGAAGTTATGTAATTGA TTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTG CCTTTCAGGTTGCTGCAGAAAACTTGTATATATATATATATATATGATCATTTAGGTTGATAAAAAAAAAA ]
[+] EMBL AU088610 [ CGTGT CATTGGATTCATCCCAAGGTTGTTGCATC TAGTGGACCAAAAACAACCNTGATGATTCT GAATTTCCACCACGGAAGCTTCATGGAAGAAGCAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATTCTGG CCCATCGTTGTTGCTACTGCTTTGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGGTCAAATTGTATCCCAGCAGCAATGAG AAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGA GCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCA TCTACTCA A TACTGAAAATCGTCTG GGTG TTTATG CGTTGAAGTTATGTAATTGA TTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTG CCTTTCAGGTTGCTGCAGAAAACTTGTATATATATATATATATATGATCATTTAGGTTGAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI811845 [ CAGCAGCAATGAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGA GCTGATTATGCTCACCAAGTCCCGCCGACATGCTCAGTTTATGAGACATCTCCTAAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCA TCTACTCA A TACTGAAAATCGTCTG GGTG TTTATG CGTTGAAGTTATGTAATTGA TTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTC ACTGC GTGCCCTTTCAGGTTGCTGCAGAAAACTTG TATATATATATATGATCATTTAGGTTAAAAAAAAAA ]
[+] EMBL BI810766 [ CATGCTCGATTGAGGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTAAATATGTACCCACGTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCA TCTACTCA A TACTGAAAATCGTCTG GGTG TTTATG CGTTGAAGTTATGTAATTGA TTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAACTCCAGTGCCCTTTCAGGTTGCT CAGAAAACTTG TATATATATATATGATCATTTAGGTTAAAAAAAAAA ]
[+] EMBL BQ907731 [ cTCACTCTACTCACACTACTGAAAATCGTCTGCGGTGCTTTATGTCGTTGAAGTTATGTAATTGATTTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAACTGCAGTGCCCTTTCAGGTTGCTGCAGAAAACTTG TATATATATATATGATCATTTAGGTTGAAAAAAAAAA ]
consensusID : consensus_15637#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[GGTGATGTGGCTCAATGCATTTTGAGCATTTGGTGCTAATTATATAGGAATACAGGATATAAGATAAGATTGTTTATTTTGGCCTCCATGGTTTGCTGAAATCCAGCATGTTTGATGCTTGTTGCGGCAATTCTGATTTTACTGGTTATGAAGTGGTTGCTATCAGCTGAGTTTTAATTAACGCAGGCTTCTGTTGGCTTTTCAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATTTACTCAATACTGAAAATCGTTTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTCAGGTTGCTGCAGAAAACTTGTATATATATATATATATATGATCA]
[-] EMBL CB637275 [GGTGATGTGGCTCAATGCATTTTGAGCATTTGGTGCTAATTATATAGGAATACAGGATATAAGATAAGATTGTTTATTTTGGCCTCCATGGTTTGCTGAAATCCAGCATGTTTGATGCTTGTTGCGGCAATTCTGATTTTACTGGTTATGAAGTGGTTGCTATCAGCTGAGTTTTAATTAACGCAGGCTTCTGTTGGCTTTTCAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCATCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGATTGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAATATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATTTACTCAATACTGAAAATCGTTTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCCCCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACTGCTCCTGGTTTGTCAATTGCAGTGCCCTTCAGGTTGCTGCAGAAAACTTGTATATATATATATATATATGATCA]
consensusID : consensus_15637#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 122 fasta sequence
[AACAAACCTGATGATTCTGAATTTCCACACGAAGCTTCATGGAAGNNNAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATNCTNNCCCATCGTTGTTGCNNCTGCTTTGGTG]
[+] EMBL AA749652 [AACAAACCTGATGATTCTGAATTTCCACACGAAGCTTCATGGAAGNNNAACTCTTATCACTGTACAAGAATGTGAGGAAAAGCAACAAATNCTNNCCCATCGTTGTTGCNNCTGCTTTGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 CCGCACGCAACGCCAATCCTTCCTTCCCCTTCTTCTCGCGAGAGAGAGAGAGAGAGAGAG 60
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 AGAGAGAGAGAGAGTAGTTCAGTTCCCATTCTCGCCTGCTTTCCTCACTCGCGATCGCGA 120
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 CTCCCCCCCTCCTCGTCGCCGGAAGATGGAGCCTGATCAGAGTGGTGCTGAGCAGACTTC 180
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 TCCACGTGGGAATGATTGGGAAGTTGTCCAACTTACTGCATCAACATATGCATCTGCACC 240
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 TGGACCAAGAATGTCTGAGCCTTCTGATGAGGCTGAAGTCAAGGGATATGACACAAAAGG 300
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 GGATGATTCAGCTGCAGCACTGTTGATGTCTGGTCATTTCTCGGTTTCACCGAGTGAGGT 360
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 TGAGAGTCTCCTTAGGGGCACTGACGGCAAAGAGCACCAGAAGGAGCTTTCTGGCCAAGA 420
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 TGCAGTTTCTGCCGAAGGTGATGACGAAAAATTCCAGGACACCTGTGAGCATAAACTGAA 480
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 GGATGACCTTCACTGGATTCCATCCTTTGACAAAGGGAAAAACCTTTCCCTGGTTGACAT 540
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 GGAGTTTGATAAAGCATTCCAAGGGATGGGTTTGGTTGGTGAGGAACCACTTGGGTTCTC 600
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 ATCATCTCGTTACAATCCAATTGATGCTAACAATGAGAAGAAAACTGAGGAGCCAACTGT 660
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 CAAATGTGACCCGTGTCCATTGATTCATCCAAGNTTGTTGCATCNTAGTGAACAAAACAA 60
consensus_15637#3 -------------------------------------------------------AACAA 5
consensus_15637#0 GCAAAATGTGAACCGTGTCATTGATTCATCCAAGGTTGTTGCATCTAGTGAACAAAACAA 720
consensus_15637#2 -----------------------------------------GGTGATGTGGCTCAATGCA 19
* *
consensus_15637#1 ACCTGATGATTC--TGGAATTTCCACACGAA-GCTTCATGGAAGAAGCAACTCTTATCAC 117
consensus_15637#3 ACCTGATGATTC--TG-AATTTCCACACGAA-GCTTCATGGAAGNNN-AACTCTTATCAC 60
consensus_15637#0 ACCTGATGATTC--TG-AATTTCCACACGAA-GCTTCATGGAAGAAGCAACTCTTATCAC 776
consensus_15637#2 TTTTGAGCATTTGGTGCTAATTATATAGGAATACAGGATATAAGATAAGATTGTTTATTT 79
*** *** ** * ** * * *** * ** *** * * **
consensus_15637#1 TG--TACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCCCATCGTTGTTGCTACTGCTT 175
consensus_15637#3 TG--TACAAGAATGTGAGGAAAAGCAACAAATNCTNNCCC-ATCGTTGTTGCNNCTGCTT 117
consensus_15637#0 TG--TACAAGAATGTGAGGAAAAGCAACAAATTCTGGCCC-ATCGTTGTTGCTACTGCTT 833
consensus_15637#2 TGGCCTCCATGGTTTGCTGAAATCCAGCATGTTTGATGCTTGTTGCGGCAATTCTGATTT 139
** * * * ** **** ** ** * * * * * **
consensus_15637#1 TGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGG 235
consensus_15637#3 TGGTG------------------------------------------------------- 122
consensus_15637#0 TGGTGGGAGTCACATGTTTTTGGAGGCGCTGGCAGAAGGGCAAGTTGCAGCATCAGCCGG 893
consensus_15637#2 TACTGGTTATGAAGTGGTT--------------------GCTATCAGCTGAGTTTTAATT 179
* **
consensus_15637#1 TCAAATTGTATCCCAGCAGCAATGAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCA 295
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 TCAAATTGTATCCCAGCAGCAATGAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCA 953
consensus_15637#2 AACGCAGGCTTCTGTTGGCTTTTCAGAAAATTAACCAAGCTGTAGGACCGTTGAATCGCA 239
consensus_15637#1 TCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGAT 355
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 TCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGAT 1013
consensus_15637#2 TCAAGGACATCCTTGTTGCCAACAATCACCCAGCTCCAGCTATCCATGGACATGCTCGAT 299
consensus_15637#1 TGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAA 415
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 TGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAA 1073
consensus_15637#2 TGAGCTGATTATGCTCACCAAGTCCCGCCAACATGCTCAGTTTATGAGACATCTCCTGAA 359
consensus_15637#1 TATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTAC 475
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 TATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATCTAC 1133
consensus_15637#2 TATGTACCCACTTGAGTCATCATCATCAGTGAAGAATGAATGCACTGGGGCATCATTTAC 419
consensus_15637#1 TCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCC 535
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 TCAATACTGAAAATCGTCTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCC 1193
consensus_15637#2 TCAATACTGAAAATCGTTTGGGTGTTTATGCGTTGAAGTTATGTAATTGATTCAAACCCC 479
consensus_15637#1 CCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACT 595
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 CCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACT 1253
consensus_15637#2 CCCTTGGATTTGTATTTATGTGTTTAGTGTGATTCATCTTCTTCCTCTTTTGAGAGTACT 539
consensus_15637#1 GCTCCTGGTTTGTCAACTGCAGTGCCCTTTCAGGTTGCTGCAGAAAACTTGTATATATAT 655
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 GCTCCTGGTTTGTCAATTGCAGTGCCCTTTCAGGTTGCTGCAGAAAACTTGATATATATA 1313
consensus_15637#2 GCTCCTGGTTTGTCAATTGCAGTGCCCTTCAGGTTGCTGCAGAAAACTTGTATATATATA 599
consensus_15637#1 ATATGATCATTTAGGTTGAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- 699
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 TATATATATGATCATTTAGGTTGATGATGTTTTTGGTCTGTCTGTGTTGTGTGATCCTGC 1373
consensus_15637#2 TATATATATGATCA---------------------------------------------- 613
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 TTATATTGTCAACACTTACGTTTGATTTCCCAAGAACAGTTTAGCAGAAGCTGTAACTCG 1433
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 ATGAGTCAGGCTTTCAGATACCAAAGCTTTGATTACATCACATATTGTAGTATTGTCTGA 1493
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 ------------------------------------------------------------
consensus_15637#3 ------------------------------------------------------------
consensus_15637#0 AGCCACTACTGGGTCTCTTTTTAAAACTGTGCTATATTCCATTTTGTATTACTAGCATAT 1553
consensus_15637#2 ------------------------------------------------------------
consensus_15637#1 -----------------------------------------
consensus_15637#3 -----------------------------------------
consensus_15637#0 CATGAATAAATACATAATTACCCCACTTTTAAAAAAAAAAA 1594
consensus_15637#2 -----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||