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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1076 fasta sequence
[CATGGACTGAGGAGTAGAAAGACTCGTCGGCTCGCCTCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG-TTGACA-TTA-TTCTCAGAAA-TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT-CCTA-TTGTGCCTCGATGAAATTGTTGATGG-A-GGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCAT-CCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCT-GAATCCA-TTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCT-GGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTGTGCAGTGGATCAATATATTGCTTATGGAGATGAATGTCTTTCTTTAACTCGCTTTTGGTATATTGAATTAACAAAACACAAAATGTGATTCCTGAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGA]
[+] EMBL CF321087 [CATGGACTGAGGAGTAGAAAGACTCGTCGGCTCGCCTCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT CCTA TTGTGCCTCGATGAAATTGTTGATGG AGGGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTT ]
[+] EMBL CF317173 [ GGCTCGCCTCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAGGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT CCTA TTGTGCCTCGATGAAATTGTTGATGGAA GGGATTGTCCTGGAAACAGAAGGAAGT ]
[+] EMBL AK059189 [ GCTCGCCTCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT CCTA TTGTGCCTCGATGAAATTGTTGATGG A GGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCAT CCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCT GAATCCA TTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCT GGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTT ]
[+] EMBL AK099044 [ GCCTCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT CCTA TTGTGCCTCGATGAAATTGTTGATGG A GGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGTTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCAT CCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCT GAATCCA TTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCT GGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTGTGCAGTGGATCAATATATTGCTTATGGAGATGAATGTCTTTCTTTAACTCGCTTTTGGT ]
[+] EMBL CF311512 [ TCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT CCTA TTGTGCCTCGATGAAATTGTTGATGGAA GGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGT ]
[+] EMBL CB096323 [ TTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCTTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT CCTA TTGTGCCTCGATGAAATTGTTGATGG A GGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCATNCCCGTTGGTACATCTCTAGGACTGATACGNTCATTGCAATAGAAACGACGGAACAGAATATCTGGAATNCATTTTGCGNGTAGAGNGGCACGNTCCCTTCATTGACACTATCTGGGTTCAGTTTTGCGAGGATTTAAAAAACTGCNC AACAAGATTGGGAACGGGGATTGGTTCAATTTTGAATGGTCTTTGGTTT ]
[+] EMBL CF306787 [ GTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT CCTA TTGTGCCTCGATGAAATTGTTGATGG A GGGATT ]
[+] EMBL AK104166 [ TCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT CCTA TTGTGCCTCGATGAAATTGTTGATGG A GGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCAT CCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCT GAATCCA TTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCT GGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTGTGCAGTGGATCAATATATTGCTTATGGAGATGAAT ]
[+] EMBL AB042259 [ CCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT CCTA TTGTGCCTCGATGAAATTGTTGATGG A GGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCAT CCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCT GAATCCA TTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCT GGGTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTG ]
[+] EMBL AU029890 [ CCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAA NTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGT GTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGANGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAcgnc ]
[+] EMBL CB096254 [ CCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT CCTA TTGTGCCTCGATGAAATTGTTGATGG A GGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCAT CCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCT GAATCCA TTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCTGGGTTCAGNTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGNGATTGGTTCAATTTTGATTGGTCTTTGGTTTGGAGATTTATATATATGGTGGTGGGCAGGGGATCAATATATTGCTTATGGAGATGAATGGCTT ]
[-] EMBL CF321086 [ GAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAG TTGACA TTA TTCTCAGAAA TAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCAT CCTA TTGTGCCTCGATGAAATTGTTGATGG A GGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCAT CCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCT GAATCCA TTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCT GGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTGTGCAGTGGATCAATATATTGCTTATGGAGATGAAaaaaaa ]
[+] EMBL AU095009 [ GCAGTTTGACATTTATTTCTCAGAAATTAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCCTATTTGTGCCTCGATGAAATTGTTGATGG A GGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCAT CCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCT GAATCCA TTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCT GGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAAaaaaaaa ]
[+] EMBL AU069270 [ ccgAGCAT CCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCT GAATCCA TTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCT GGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTGTGCAGTGGATCAAaaaaaa ]
[+] EMBL CF307614 [ TCCA TTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCT GGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTGTGCAGTGGATCAATATATTGCTTATGGAGATGAATGTCTTTCTTTAACTCGCTTTTGGTATATTGAATTAACAAAACACAAAATGTGATTCCTGAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGA]
consensusID : consensus_15651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1057 fasta sequence
[CGTGAAGCCCAACAACGAATGAAGACTAGTAGCTGTGCTCTTCGTCCACCTCGACTCGTCGGCTCGCCTCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAGTTGACATTATTCTCAGAAATAACGTCG-ACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCATCCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCTGAATCCATTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTA-T-CTGGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTGTGCAGTGGATCAATATATTGCTTATGGAGATGAATGTCTTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAAAAAAAAA]
[+] EMBL AK066739 [CGTGAAGCCCAACAACGAATGAAGACTAGTAGCTGTGCTCTTCGTCCACCTCGACTCGTCGGCTCGCCTCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAGTTGACATTATTCTCAGAAATAACGTCG ACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCATCCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCTGAATCCATTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTA T CTGGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTGTGCAGTGGATCAATATATTGCT ]
[+] EMBL CB679184 [ AAGACTTGTAGCTGTGCTCTTCGTCCACCTCGACTCGTCGGCTCGCCTCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAGTTGACATTATTCTCAGAAATAACGTCG ACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCATCCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCTGAATCCATTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTA T CTGGGTCAGTTTTGCGAGTAT ]
[+] EMBL CF336232 [ CGACTCGTCGGCTCGCCTCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGATCCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCTGCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGTACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCGTCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACATTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAGTTGACATTATTCTCAGAAATAACGTCG ACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCTATTGTGCCTCGATGA ]
[-] EMBL CF336233 [ GAGGAGAGGAGGAGAATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAGTTGACATTATTCTCAGAAATAACGTCGAACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCTATTGTGCCTCGATGAAATTGTTGATGGAGGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGGTGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCCTAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGGAGCTGAAGATGGAGTAGCATCCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCTGAATCCATTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTA T CTGGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTGTGCAGTGGATCAATATATTGCTTATGGAGATGAATGTCTTTC AAAAAAA ]
[-] EMBL CA758160 [ GTTGTTACATTTTTAGGACTGATACGTTCATTGCAATAAAAACGACGGAACAGAAAATTTGAATCCATTTGGGTGTAGAGGGGCACGTTCCCTTCATTGACACTA T TTGGTTCAGTTTTGGGAGTATTTAAAAAACTGCCCAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTTTTTGTTTTGTAAATTTAAAAAAAAGTTGTTGGGCAGTGGATCAAAATATTGCTTATGGAAATGAATGTTTTTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT ]
[+] EMBL CF318153 [ tTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCTGAATCCATTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTA T CTGGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTGTGCAGTGGATCAATATATTGCTTATGGAGATGAATGTCTTTCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU173533 [ anATCTGAATCCATTTGCGTGTAGAGTGGCACGTTNCCTTCNNTGCCACTANTNCTGGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTGAACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTGTGCAGTGGATCAATATATTGCTTATGGAGATGAATGTCTTTCTTTAAAAAA ]
consensusID : consensus_15651#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 163 fasta sequence
[TTCCCCTTGACCTGACTGGACTGAAGAGTGCTCCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCTGAATCCATTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCTGGTTCAGTTTTGCGAGTATT]
[+] EMBL CF315796 [TTCCCCTTGACCTGACTGGACTGAAGAGTGCTCCCGTTGTTACATCTCTAGGACTGATACGTTCATTGCAATAGAAACGACGGAACAGAATATCTGAATCCATTTGCGTGTAGAGTGGCACGTTCCCTTCATTGACACTATCTGGTTCAGTTTTGCGAGTATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15651#0 ---------------------------------CATGGACTGAGGAGTAGAAAGACTCGT 27
consensus_15651#1 CGTGAAGCCCAACAACGAATGAAGACTAGTAGCTGTGCTCTTCGTC-CACCTCGACTCGT 59
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 CGGCTCGCCTCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGAT 87
consensus_15651#1 CGGCTCGCCTCGGCTTCCTTCGTTGGTCCGCACCTTCTCCCCTCACCCGCCGCCGGGGAT 119
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 CCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCT 147
consensus_15651#1 CCGCTCCGCCGTCTCGCCTCCCGCCCCGTGGATCCACCTTGCCGCTCCAGATGGAATCCT 179
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 GCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGT 207
consensus_15651#1 GCCCTTCGGTGAAGAACATCCTTCTGCTGGATTCCGAGGGGAAGCGCGTCGCCGTCAAGT 239
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 ACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCG 267
consensus_15651#1 ACTACACGGATGATTGGCCTACTCTCTCGGCGAAGCTGGCCTTCGAGAAGTCGGTGTTCG 299
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 TCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACA 327
consensus_15651#1 TCAAGACCCAGAAAGCCACTGCCGGAGCAGAAGCTGAGATTGTAATGTTTGATGGCCACA 359
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 TTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGA 387
consensus_15651#1 TTGTGGTGTATAAGTTCATCCAAGACCTCCATTTTTTTGTTACTGGAGGAGAGGAGGAGA 419
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 ATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAGTTGACATTATTCTCA 447
consensus_15651#1 ATGAGCTTATTTTAGCATCGGTCCTTCAAGGATTCACTGATGCAGTTGACATTATTCTCA 479
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 GAAATAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCTATTGTGCCTCG 507
consensus_15651#1 GAAATAACGTCGACAAAAGAACAGCACTCGAAAATCTGGATCTCATCCTATTGTGCCTCG 539
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 ATGAAATTGTTGATGGAGGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGG 567
consensus_15651#1 ATGAAATTGTTGATGGAGGGATTGTCCTGGAAACAGAAGGAAGTGTGATAGCTGAAAAGG 599
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 TGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCC 627
consensus_15651#1 TGTCAGCACATGGAATAGAAGGTGCTACTTCACTCGCTGAGCAGACTATAGTTCAAGCCC 659
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 TAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGG 687
consensus_15651#1 TAACAACAGCAAGAGAGCACTTGACCAAATCTCTTCTTATGTGATGTGCTCTGCTTTTGG 719
consensus_15651#2 ---------------------------------------------------TTCCCCTTG 9
* * * *
consensus_15651#0 AGCTGA--AGATGGAGTAGCA-TCCCGTTGTTACATCTCTAGGACTGATACGTTCATTGC 744
consensus_15651#1 AGCTGA--AGATGGAGTAGCA-TCCCGTTGTTACATCTCTAGGACTGATACGTTCATTGC 776
consensus_15651#2 ACCTGACTGGACTGAAGAGTGCTCCCGTTGTTACATCTCTAGGACTGATACGTTCATTGC 69
* **** ** ** ** **************************************
consensus_15651#0 AATAGAAACGACGGAACAGAATATCTGAATCCATTTGCGTGTAGAGTGGCACGTTCCCTT 804
consensus_15651#1 AATAGAAACGACGGAACAGAATATCTGAATCCATTTGCGTGTAGAGTGGCACGTTCCCTT 836
consensus_15651#2 AATAGAAACGACGGAACAGAATATCTGAATCCATTTGCGTGTAGAGTGGCACGTTCCCTT 129
************************************************************
consensus_15651#0 CATTGACACTATCTGGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTG 864
consensus_15651#1 CATTGACACTATCTGGTTCAGTTTTGCGAGTATTTAAAAAACTGCACAAACAAGATTGTG 896
consensus_15651#2 CATTGACACTATCTGGTTCAGTTTTGCGAGTATT-------------------------- 163
**********************************
consensus_15651#0 AACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTG 924
consensus_15651#1 AACGGTGATTGTTTCAATTTTGATTGTTCTTTGTTTTGTAGATTTATATATATGTTGTTG 956
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 TGCAGTGGATCAATATATTGCTTATGGAGATGAATGTCTTTCTTTAACTCGCTTTTGGTA 984
consensus_15651#1 TGCAGTGGATCAATATATTGCTTATGGAGATGAATGTCTTTCTTTAA------------- 1003
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 TATTGAATTAACAAAACACAAAATGTGATTCCTGAATTTTAAAAAAAAAAAAAAAAAAAA 1044
consensus_15651#1 ------------AAAAAAAAAAA------------------AAAAAAAAAAAAAAAAAAA 1033
consensus_15651#2 ------------------------------------------------------------
consensus_15651#0 AAAAAAAAAAAGAAAAAAAAAAAAAAAAAAGA 1076
consensus_15651#1 AAAAAAAAAACTAAAAAAAAAAAA-------- 1057
consensus_15651#2 --------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||