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Oryza sativa
cluster # 157 cluster # 157       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_157#0 length = 1385 sequences # 1  
consensus_157#1 length = 664 sequences # 1  

consensusID : consensus_157#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1385
fasta sequence
                              [CCAAAGGATGGCTTACAAGTCCTCCGCCGCCTCGCAATGGCCGGCCTAGCCGACGGCCGCTGTCCGACCAACGGCCGAAGGTGGAATCCGGGGAGGAGGGACCGGCCAGCACCCGCACCGCCACCACCACCATCCACTCGCTCGGCGAGGATCTCCTGCTCGCCTTCCTCCGCCTCCCGTCTCTTGCGGTGCTCGTCCGCGCCGCCCTCGCCTGCCGCGCGTGGCGCCGCGTCGCCGGCCTTCCGCGCCCGCTTCCGCGCAACCCACCGGGCGCCATTCCTCGGCCTCTTCTTCGCGCCCTCCGCCCCGCGACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAAGATCGCCCCCCACGACGAGCAGCAATGCAGATCTGCGGCGGCTACTGCCTGCTCATGAATTGGGATGATGGGTTGTTCGCGGTGCTGAACCCATTGATGCGGACAACACCGGGGAGTGGTCGTCTCTGCCATGGGTGGACATCCCAGAACCTGTCAGGTCAGATGACACTAGCTGCTGGCTTCTGAATTATGGGTCTACGAGAATCGGAGGTATGTGCTTTCGCTTGACACCGCCACAATGGCATTCTCCGCTGTTCAGCTTCCGCAGTGCCCGAGACATTGTTCTTTTGATGTTGGCGAAACAAAGGATGGCGCGATCTGCATCGTTTACGCGCATCAATTGAATGTCAGCGTTCTGATGCACACCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGTAGTTCCCTTGGACAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGTGACGGCAGTGTACTGATGCATTTTAGTGGATGACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACAGCTACGCGTATTTAGCAACATCTCCGATGTTCCATGATCCCTAATCTCCTTGTTGGTTCCTGTTCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATGATGTTCAGCCGTACATCATGGCATGACCTCCTTCTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGAGGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATTAGAAGAAAATGAGCAGAATCTATGAACCACACTGCCTTGCTCGTGATTAAATCGAAATGCTGAAGAGATACTAGAAATTGATTTTTTTTTTTGCCGGGTTGGCCGAAAGAAAGGGCGACCAAATTTCATTAAGATTGGGTGTGTGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAACTGAAGAATCTAGTCAAGTTG]

[+] EMBL AK108574             [CCAAAGGATGGCTTACAAGTCCTCCGCCGCCTCGCAATGGCCGGCCTAGCCGACGGCCGCTGTCCGACCAACGGCCGAAGGTGGAATCCGGGGAGGAGGGACCGGCCAGCACCCGCACCGCCACCACCACCATCCACTCGCTCGGCGAGGATCTCCTGCTCGCCTTCCTCCGCCTCCCGTCTCTTGCGGTGCTCGTCCGCGCCGCCCTCGCCTGCCGCGCGTGGCGCCGCGTCGCCGGCCTTCCGCGCCCGCTTCCGCGCAACCCACCGGGCGCCATTCCTCGGCCTCTTCTTCGCGCCCTCCGCCCCGCGACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGCAAGATCGCCCCCCACGACGAGCAGCAATGCAGATCTGCGGCGGCTACTGCCTGCTCATGAATTGGGATGATGGGTTGTTCGCGGTGCTGAACCCATTGATGCGGACAACACCGGGGAGTGGTCGTCTCTGCCATGGGTGGACATCCCAGAACCTGTCAGGTCAGATGACACTAGCTGCTGGCTTCTGAATTATGGGTCTACGAGAATCGGAGGTATGTGCTTTCGCTTGACACCGCCACAATGGCATTCTCCGCTGTTCAGCTTCCGCAGTGCCCGAGACATTGTTCTTTTGATGTTGGCGAAACAAAGGATGGCGCGATCTGCATCGTTTACGCGCATCAATTGAATGTCAGCGTTCTGATGCACACCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGTAGTTCCCTTGGACAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGTGACGGCAGTGTACTGATGCATTTTAGTGGATGACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACAGCTACGCGTATTTAGCAACATCTCCGATGTTCCATGATCCCTAATCTCCTTGTTGGTTCCTGTTCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATGATGTTCAGCCGTACATCATGGCATGACCTCCTTCTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGAGGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATTAGAAGAAAATGAGCAGAATCTATGAACCACACTGCCTTGCTCGTGATTAAATCGAAATGCTGAAGAGATACTAGAAATTGATTTTTTTTTTTGCCGGGTTGGCCGAAAGAAAGGGCGACCAAATTTCATTAAGATTGGGTGTGTGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAACTGAAGAATCTAGTCAAGTTG]


>consensus_157#0 CCAAAGGATGGCTTACAAGTCCTCCGCCGCCTCGCAATGGCCGGCCTAGCCGACGGCCGC TGTCCGACCAACGGCCGAAGGTGGAATCCGGGGAGGAGGGACCGGCCAGCACCCGCACCG CCACCACCACCATCCACTCGCTCGGCGAGGATCTCCTGCTCGCCTTCCTCCGCCTCCCGT CTCTTGCGGTGCTCGTCCGCGCCGCCCTCGCCTGCCGCGCGTGGCGCCGCGTCGCCGGCC TTCCGCGCCCGCTTCCGCGCAACCCACCGGGCGCCATTCCTCGGCCTCTTCTTCGCGCCC TCCGCCCCGCGACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTC CCTGCAACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGC AAGATCGCCCCCCACGACGAGCAGCAATGCAGATCTGCGGCGGCTACTGCCTGCTCATGA ATTGGGATGATGGGTTGTTCGCGGTGCTGAACCCATTGATGCGGACAACACCGGGGAGTG GTCGTCTCTGCCATGGGTGGACATCCCAGAACCTGTCAGGTCAGATGACACTAGCTGCTG GCTTCTGAATTATGGGTCTACGAGAATCGGAGGTATGTGCTTTCGCTTGACACCGCCACA ATGGCATTCTCCGCTGTTCAGCTTCCGCAGTGCCCGAGACATTGTTCTTTTGATGTTGGC GAAACAAAGGATGGCGCGATCTGCATCGTTTACGCGCATCAATTGAATGTCAGCGTTCTG ATGCACACCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGTAGTTCCCT TGGACAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGTGACGGCAGTGTACTGATGC ATTTTAGTGGATGACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACAGCTACGCGTAT TTAGCAACATCTCCGATGTTCCATGATCCCTAATCTCCTTGTTGGTTCCTGTTCCTATGT TTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATGATGTTCAGCCG TACATCATGGCATGACCTCCTTCTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGAG GCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATTAGAAGAAAATGAGCAGAATCTA TGAACCACACTGCCTTGCTCGTGATTAAATCGAAATGCTGAAGAGATACTAGAAATTGAT TTTTTTTTTTGCCGGGTTGGCCGAAAGAAAGGGCGACCAAATTTCATTAAGATTGGGTGT GTGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAACTGAAGAATCTAGTCA AGTTG



consensusID : consensus_157#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 664
fasta sequence
                              [CGGCGAAACAAAGGATGGCGCGACCTGCATCGTTTACGCGCATCAATTGAAAGTNGGCGTTCTGATGCCCCCCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGGTAGTTCCCTTGGGCAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGCGATGGCAGTGTACTGATGCATTTGGTGGATAACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACGGCTACGCGTATTTAGCAACATTTCCGATGTTCCATGATCCCCAATCTCCTTGTTGGTTCCTGTCCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATCTTGTTCAGCCGTACATCATGGCATGGCCTCCTTTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGATGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATGGGAAGAAAATGAGCAGAATTTTCGAACCCCTGCCTTGCCTGTGATTAAATCGAAATGCTGAAGTGATACTAGAAAATGATTTATTTTTCTTTTGTCGGGTCGGCCGAAAGAAAGGCCGACCAAATTTCATTAAGATTGGGGGTATGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760945             [CGGCGAAACAAAGGATGGCGCGACCTGCATCGTTTACGCGCATCAATTGAAAGTNGGCGTTCTGATGCCCCCCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGGTAGTTCCCTTGGGCAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGCGATGGCAGTGTACTGATGCATTTGGTGGATAACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACGGCTACGCGTATTTAGCAACATTTCCGATGTTCCATGATCCCCAATCTCCTTGTTGGTTCCTGTCCCTATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATCTTGTTCAGCCGTACATCATGGCATGGCCTCCTTTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGATGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATGGGAAGAAAATGAGCAGAATTTTCGAACCCCTGCCTTGCCTGTGATTAAATCGAAATGCTGAAGTGATACTAGAAAATGATTTATTTTTCTTTTGTCGGGTCGGCCGAAAGAAAGGCCGACCAAATTTCATTAAGATTGGGGGTATGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAAAAAAAAAAAAAAAAAA]


>consensus_157#1 CGGCGAAACAAAGGATGGCGCGACCTGCATCGTTTACGCGCATCAATTGAAAGTNGGCGT TCTGATGCCCCCCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGGTAGT TCCCTTGGGCAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGCGATGGCAGTGTACT GATGCATTTGGTGGATAACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACGGCTACGC GTATTTAGCAACATTTCCGATGTTCCATGATCCCCAATCTCCTTGTTGGTTCCTGTCCCT ATGTTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATCTTGTTCA GCCGTACATCATGGCATGGCCTCCTTTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAA GATGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATGGGAAGAAAATGAGCAGAAT TTTCGAACCCCTGCCTTGCCTGTGATTAAATCGAAATGCTGAAGTGATACTAGAAAATGA TTTATTTTTCTTTTGTCGGGTCGGCCGAAAGAAAGGCCGACCAAATTTCATTAAGATTGG GGGTATGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAAAAAAAAAAAAAA AAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_157#0      CCAAAGGATGGCTTACAAGTCCTCCGCCGCCTCGCAATGGCCGGCCTAGCCGACGGCCGC 60
consensus_157#1      ------------------------------------------------------------
                                                                                 

consensus_157#0      TGTCCGACCAACGGCCGAAGGTGGAATCCGGGGAGGAGGGACCGGCCAGCACCCGCACCG 120
consensus_157#1      ------------------------------------------------------------
                                                                                 

consensus_157#0      CCACCACCACCATCCACTCGCTCGGCGAGGATCTCCTGCTCGCCTTCCTCCGCCTCCCGT 180
consensus_157#1      ------------------------------------------------------------
                                                                                 

consensus_157#0      CTCTTGCGGTGCTCGTCCGCGCCGCCCTCGCCTGCCGCGCGTGGCGCCGCGTCGCCGGCC 240
consensus_157#1      ------------------------------------------------------------
                                                                                 

consensus_157#0      TTCCGCGCCCGCTTCCGCGCAACCCACCGGGCGCCATTCCTCGGCCTCTTCTTCGCGCCC 300
consensus_157#1      ------------------------------------------------------------
                                                                                 

consensus_157#0      TCCGCCCCGCGACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTC 360
consensus_157#1      ------------------------------------------------------------
                                                                                 

consensus_157#0      CCTGCAACCGGGACATGGCCGCCGCCGTCCGTGGCGGCGACTTCTTCCTCACCTCCCTGC 420
consensus_157#1      ------------------------------------------------------------
                                                                                 

consensus_157#0      AAGATCGCCCCCCACGACGAGCAGCAATGCAGATCTGCGGCGGCTACTGCCTGCTCATGA 480
consensus_157#1      ------------------------------------------------------------
                                                                                 

consensus_157#0      ATTGGGATGATGGGTTGTTCGCGGTGCTGAACCCATTGATGCGGACAACACCGGGGAGTG 540
consensus_157#1      ------------------------------------------------------------
                                                                                 

consensus_157#0      GTCGTCTCTGCCATGGGTGGACATCCCAGAACCTGTCAGGTCAGATGACACTAGCTGCTG 600
consensus_157#1      ------------------------------------------------------------
                                                                                 

consensus_157#0      GCTTCTGAATTATGGGTCTACGAGAATCGGAGGTATGTGCTTTCGCTTGACACCGCCACA 660
consensus_157#1      ------------------------------------------------------------
                                                                                 

consensus_157#0      ATGGCATTCTCCGCTGTTCAGCTTCCGCAGTGCCCGAGACATTGTTCTTTTGATGTTGGC 720
consensus_157#1      --------------------------------------------------------CGGC 4
                                                                              ***

consensus_157#0      GAAACAAAGGATGGCGCGATCTGCATCGTTTACGCGCATCAATTGAATGTCAGCGTTCTG 780
consensus_157#1      GAAACAAAGGATGGCGCGACCTGCATCGTTTACGCGCATCAATTGAAAGTNGGCGTTCTG 64
                     ******************* *************************** **  ********

consensus_157#0      ATGCACACCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGG-TAGTTCCC 839
consensus_157#1      ATGCCCCCCAAGGGTGATGATGGTGCTGCTGAGAGATGGGTGATGGACAGGGTAGTTCCC 124
                     **** * ******************************************** ********

consensus_157#0      TTGGACAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGTGACGGCAGTGTACTGATG 899
consensus_157#1      TTGGGCAAGGAGCTCGAACGAGTCCTTCGAGCCCCGCTGCGCGATGGCAGTGTACTGATG 184
                     **** ************************************ ** ***************

consensus_157#0      CATTTTAGTGGATGACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACAGCTACGCGTA 959
consensus_157#1      CATTT-GGTGGATAACCCCAGACAGGTGTTTGTGTTAGCTGTCCGCGACGGCTACGCGTA 243
                     *****  ****** *********************************** **********

consensus_157#0      TTTAGCAACATCTCCGATGTTCCATGATCCCTAATCTCCTTGTTGGTTCCTGTTCCTATG 1019
consensus_157#1      TTTAGCAACATTTCCGATGTTCCATGATCCCCAATCTCCTTGTTGGTTCCTGTCCCTATG 303
                     *********** ******************* ********************* ******

consensus_157#0      TTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATGATGTTCAGCC 1079
consensus_157#1      TTTGGAAACGATGAAACTGGAAAGGCTGTTTCGCAGGACATTTGACAATCTTGTTCAGCC 363
                     *************************************************  *********

consensus_157#0      GTACATCATGGCATGACCTCCTTCTTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGA 1139
consensus_157#1      GTACATCATGGCATGGCCTCCTT-TTTAGTCGGTAACTATGGGAGGTTTGCAGTTGAAGA 422
                     *************** ******* ************************************

consensus_157#0      GGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATTAGAAGAAAATGAGCAGAATCT 1199
consensus_157#1      TGCTCCATGAAATGCAGTACTCCTTGGTCATTGGGCATGGGAAGAAAATGAGCAGAATTT 482
                      *************************************  ****************** *

consensus_157#0      ATGAACCACACTGCCTTGCTCGTGATTAAATCGAAATGCTGAAGAGATACTAGAAATTGA 1259
consensus_157#1      TCGAACCCC--TGCCTTGCCTGTGATTAAATCGAAATGCTGAAGTGATACTAGAAAATGA 540
                       ***** *  ********  *********************** *********** ***

consensus_157#0      TTT---TTTTTTTTGCCGGGTTGGCCGAAAGAAAGGGCGACCAAATTTCATTAAGATTGG 1316
consensus_157#1      TTTATTTTTCTTTTGTCGGGTCGGCCGAAAGAAAGGCCGACCAAATTTCATTAAGATTGG 600
                     ***   *** ***** ***** ************** ***********************

consensus_157#0      GTGTGTGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAACTGAAGAATCTA 1376
consensus_157#1      GGGTATGTACAAATACTAGAAATTGATTTAGTTTGAAGCTGTATCAAAAAAAAAAAAAAA 660
                     * ** *******************************************   ** **   *

consensus_157#0      GTCAAGTTG 1385
consensus_157#1      AAAA----- 664
                        *     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)