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Oryza sativa
cluster # 15703 cluster # 15703       Sequences # 24       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15703#0 length = 755 sequences # 2  
consensus_15703#1 length = 743 sequences # 10  
consensus_15703#2 length = 677 sequences # 9  
consensus_15703#3 length = 414 sequences # 1  
consensus_15703#4 length = 192 sequences # 2  

consensusID : consensus_15703#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 755
fasta sequence
                              [TTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTTGAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCATGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACTTTCTACTCCTTCAGTCCAT]

[+] EMBL CF329030             [TTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTTGAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCATGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGATGGAGGCTGGA                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CF329029             [                                                                                                                     TGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTTGAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCATGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACTTTCTACTCCTTCAGTCCAT]


>consensus_15703#0 TTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTAC GACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGA TGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTT CTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCT TGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCC AATGCTTCCTGCCCTTGCCTCTTGAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGA TCAAGATAATATGCAAATGGGCATGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGA ACAACACTTACTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTG CTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGAT GAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGG AGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCT GGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCT GGGAAGAAGAAAAACTTTCTACTCCTTCAGTCCAT



consensusID : consensus_15703#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 743
fasta sequence
                              [AAATAAAAATGCCATTCTATTATCAATAGAAAAATACTCAATTACATTGATTCTTCAGTTTACATATACTTTTGTAGTACAAAGTGGAGCTGAAAAGTTGACAAAAAATTCCTCTCACAAACATATGATACACACTTCAGATGTGCTGATGAGCTGATGCTATCATCGCTCAGATCGAAACGATAAAAACATAAAAGACAACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC-AACAGTGGAAA-CTTG-AAAAACTGCATCCGC-AAAGAACTGAAGTTGAACTAA-TCTTGTTT--GTT-CTCC-AATGCTTCC-AGCCC--TTGC--TTGGA-TTTGTACTT-CCATTGCTGGTC-AGCATCATGATGGAGGCTGGAGCATCAGCAACC-TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG-T-GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGCTGTGGAGAAGATAAGGTGGGCCCAACATTTATTGGGCA]

[+] EMBL CB633035             [AAATAAAAATGCCATTCTATTATCAATAGAAAAATACTCAATTACATTGATTCTTCAGTTTACATATACTTTTGTAGTACAAAGTGGAGCTGAAAAGTTGACAAAAAATTCCTCTCACAAACATATGATACACACTTCAGATGTGCTGATGAGCTGATGCTATCATCGCTCAGATCGAAACGATAAAAACATAAAAGACAACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT  GTT CTCC AATGCTTCC AGCCC  TTGC  TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG TGGCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGGATGTGGTT                                               ]
[-] EMBL CF312315             [                                                                                                                                                                                                       AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTGGAACTAA TCTTGTTT  GTT CTCC AATGCTTCC AGCCC  TTGCCTTTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCCTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGAGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGCTGTGGAGAAGATAAGGTGGGCCCAACATTTATTGGGCA]
[-] EMBL CB633034             [                                                                                                                                                                                                       AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT  GTT CTCC AATGCTTCC AGCCC  TTGC  TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACGAGAGG                                                       ]
[-] EMBL AK111314             [                                                                                                                                                                                                       AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTGGAACTAA TCTTGTTT  GTT CTCC AATGCTTCC AGCCC  TTGC  TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGG                                                                                     ]
[-] EMBL CA764627             [                                                                                                                                                                                                       AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT  GTT CTCC AATGCTTCC AGCCC  TTGC  TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGG TTGGTCAAGGAAAGGGCAGGGGCCGCCG T                                                                                                             ]
[-] EMBL CB667243             [                                                                                                                                                                                                       AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTGGAACTAA TCTTGTTT  GTT CTCC AATGCTTCC AGCCC  TTGC  TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGC                                                                                                                    ]
[-] EMBL AU174868             [                                                                                                                                                                                                       AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAAC AACAGTGGAAA CTTG AAAAACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT  GTT CTCC AATGCTTCC AGCCC  TTGC  TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACCTTTGNGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAA                                                                                                                                                                                                                                                                         ]
[-] EMBL AU162061             [                                                                                                                                                                                                                     AAACCGAATCTAACCCACTTGATACTACCGTGCTTCTGCAACAAACAGTGGAAACCTTG AAAAACTGCATCCGCAAAAGAACTGAAGTGGAACTAA CCTTGTTT  GTC CTCC AATGCTTCC AGCCC  TTGC  TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGANAAAATTGGATCGAAACAACTTATGCAANACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCC CCGNT G CGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAANAAAAACG                                                            ]
[-] EMBL OSC8021              [                                                                                                                                                                                                                                                                AACAGTGGAAACCTTGAAAAAACTTCATCCNC AAAGAACTNAAGTGGAACTAANCCTTGTTTTGGTTCCTCCAAATGCTTCCAAGCCCCTTTGC  TTGGANTTTGTACTTCCCATTGCTGGTCAACCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCG CG T GCC GCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAGAAAAACG                                                            ]
[-] EMBL AU174869             [                                                                                                                                                                                                                                                                                    AACTGCATCCGC AAAGAACTGAAGTTGAACTAA TCTTGTTT  GTT CTCC AATGCTTCC AGCCC  TTGC  TTGGA TTTGTACTT CCATTGCTGGTC AGCATCATGATGGAGGCTGGAGCATCAGCAACC TTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCG T GCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTG                                                                      ]


>consensus_15703#1 AAATAAAAATGCCATTCTATTATCAATAGAAAAATACTCAATTACATTGATTCTTCAGTT TACATATACTTTTGTAGTACAAAGTGGAGCTGAAAAGTTGACAAAAAATTCCTCTCACAA ACATATGATACACACTTCAGATGTGCTGATGAGCTGATGCTATCATCGCTCAGATCGAAA CGATAAAAACATAAAAGACAACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTA GCGTGCTTCTGCAACAACAGTGGAAACTTGAAAAACTGCATCCGCAAAGAACTGAAGTTG AACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCTTGGATTTGTACTTCCATTGC TGGTCAGCATCATGATGGAGGCTGGAGCATCAGCAACCTTGTGGTGCTCGCTGCTTGCTG GAGTGCGCTCTTGTGCTGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAA ATTGGATCGAAACAACTTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTC CGTCGAGCTTGTCGAGAGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCT CGAGGTTTGGTCAAGGAAAGGGCAGGGGCCGCCGTGCCGGCCGGCCGCCGCACGCCGGCC GGCCGTTGGGGTGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGCTGTGGAGAAGATAAG GTGGGCCCAACATTTATTGGGCA



consensusID : consensus_15703#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 677
fasta sequence
                              [TTTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC-TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGTTTGGAGAA]

[+] EMBL CF334580             [TTTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATCNTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGG                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CF335669             [ TTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CF335786             [   ttttttTAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACG                                                                                                                                                                                       ]
[-] EMBL CB679991             [               TGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGAATGCTGTCGAC                                                                                                                  ]
[-] EMBL CF302129             [                        tTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGANAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCGCTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACCAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCAAGCTTTGGTTGAGGAAAG                                                                                ]
[+] EMBL CF302128             [                       ttTTTTTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCGCTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGC                                                                                                                                                                                                                                                                                             ]
[-] EMBL CF317486             [                                                                                                                               CACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAA                                  ]
[-] EMBL CF334579             [                                                                                                                                        TGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACGAGAG                          ]
[-] EMBL CF335785             [                                                                                                                                                      GATTCTATCATCGCTCAGATCCCAACGATAATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAGTTGAACTAATC TTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACGCTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGAAGGGGCCGCCGCCGCGCGCCGGCCGGCCGCT GGAAGAAGAAAAACGAGAGGATGTGGTTTGCTTGAGTTTGGAGAA]


>consensus_15703#2 TTTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTT CATTTTACATTACATTGATTCTACGACAATGGAGCTGAAAATATTCCTCTCACAAACATA TGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAGATCCAAACGATA ATAAAATAAAATACAACACACGTTCTTGAAAGCAAATCTAAACCACTTGATTCTAGCTTG CTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCGCAAAGAACTGAAG TTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCTTGGATCATGATGGAGGC TGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGCTGCACG CTATGAAGAAAGAAAGTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAACTAATGCA AGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAGAGCGGTA GCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGGAAAGGGA AGGGGCCGCCGCCGCGCGCCGGCCGGCCGCTGGGAAGAAGAAAAACGAGAGGATGTGGTT TGCTTGAGTTTGGAGAA



consensusID : consensus_15703#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 414
fasta sequence
                              [AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAACAACAGTGGAAACTTGAAAAACTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCCTCTTGAAAAGAAAACCCAAATAGCATGCTATCGCATTCCCATGCAACTGATGGAATCTTGTCCCAACAAAAGAACTAAATCAGGAATACTTGAATAATTCAGTCCTCATTCGACAAATCTCAAGTTGCAAACTTACTGGCAGAAGATTACATTTCTTAAAGATGCAAAACACTGTGAAATGTAATTGATGTAAAGAAAGATGAGTAAATTAAGACAGGATAAAACATATTTTTACGAACACTTTCAAGTAATAAATCCCCCCTTGTCTCGTCC]

[-] EMBL CA766646             [AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAACAACAGTGGAAACTTGAAAAACTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCCTCTTGAAAAGAAAACCCAAATAGCATGCTATCGCATTCCCATGCAACTGATGGAATCTTGTCCCAACAAAAGAACTAAATCAGGAATACTTGAATAATTCAGTCCTCATTCGACAAATCTCAAGTTGCAAACTTACTGGCAGAAGATTACATTTCTTAAAGATGCAAAACACTGTGAAATGTAATTGATGTAAAGAAAGATGAGTAAATTAAGACAGGATAAAACATATTTTTACGAACACTTTCAAGTAATAAATCCCCCCTTGTCTCGTCC]


>consensus_15703#3 AACACATGTTCTTGAAAACGAATCTAAACCACTTGATACTAGCGTGCTTCTGCAACAACA GTGGAAACTTGAAAAACTGCATCCGCAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCT CCAATGCTTCCAGCCCTTGCCTCTTGAAAAGAAAACCCAAATAGCATGCTATCGCATTCC CATGCAACTGATGGAATCTTGTCCCAACAAAAGAACTAAATCAGGAATACTTGAATAATT CAGTCCTCATTCGACAAATCTCAAGTTGCAAACTTACTGGCAGAAGATTACATTTCTTAA AGATGCAAAACACTGTGAAATGTAATTGATGTAAAGAAAGATGAGTAAATTAAGACAGGA TAAAACATATTTTTACGAACACTTTCAAGTAATAAATCCCCCCTTGTCTCGTCC



consensusID : consensus_15703#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 192
fasta sequence
                              [AGAATTTGCCCTTTGGTTAGTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACTCCTCAGTCCATG]

[-] EMBL CF336244             [AGAATTTGCCCTTTGGTTAGTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNGAAATAAAAATGCCATTCTATTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACTCCTCAGTCCATG]
[+] EMBL CF336245             [                                                TTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAATAAAAATGCCCTTCTTTTATTAATAAAAAATACTCAATTACCTTGATTCTTCATTTTACATTACATTGATTCTACTCCTCAATCCAT ]


>consensus_15703#4 AGAATTTGCCCTTTGGTTAGTAACGGGATGACAGGGGTTTTTTTTTTTTTTTGGTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNGAAATAAAAATGCCATTCTA TTATTAATAGAAAATACTCAATTACATTGATTCTTCATTTTACATTACATTGATTCTACT CCTCAGTCCATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15703#0      ------------------------TTTTTTAATAGAAAA-TACTCAATTACATTGATTCT 35
consensus_15703#2      TTTTTGAAATAAAAATGCCATTCTATTATTAATAGAAAA-TACTCAATTACATTGATTCT 59
consensus_15703#1      ------AAATAAAAATGCCATTCTATTATCAATAGAAAAATACTCAATTACATTGATTCT 54
consensus_15703#4      ------------------------------------------------------------
consensus_15703#3      ------------------------------------------------------------
                                                                                   

consensus_15703#0      TCATTTTACAT-TACATTGATTCTACGACAATGGAGCTGAAAAT----------ATTCCT 84
consensus_15703#2      TCATTTTACAT-TACATTGATTCTACGACAATGGAGCTGAAAAT----------ATTCCT 108
consensus_15703#1      TCAGTTTACATATACTTTTGTAGTACAA-AGTGGAGCTGAAAAGTTGACAAAAAATTCCT 113
consensus_15703#4      AGAATTTGCCCTTTGGTTAGTAACGGGATGACAGGGGT-----------------TTTTT 43
consensus_15703#3      ------------------------------------------------------------
                                                                                   

consensus_15703#0      CTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAG 144
consensus_15703#2      CTCACAAACATATGATGGACACTTCAGATGTGCTGATGAACTGATTCTATCATCGCTCAG 168
consensus_15703#1      CTCACAAACATATGATACACACTTCAGATGTGCTGATGAGCTGATGCTATCATCGCTCAG 173
consensus_15703#4      TTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNGAA 103
consensus_15703#3      ------------------------------------------------------------
                                                                                   

consensus_15703#0      ATCCAAACGATAATAAAATAA-AATACAACACACGTTCTTGAAAGCAAATCTAAACCACT 203
consensus_15703#2      ATCCAAACGATAATAAAATAA-AATACAACACACGTTCTTGAAAGCAAATCTAAACCACT 227
consensus_15703#1      ATCGAAACGATAAAAACATAA-AAGACAACACATGTTCTTGAAAACGAATCTAAACCACT 232
consensus_15703#4      ATAAAAATGCCATTCTATTATTAATAGAAAATAC-TCAATTACATTGATTCT---TCATT 159
consensus_15703#3      ---------------------------AACACATGTTCTTGAAAACGAATCTAAACCACT 33
                                                  ** * *  *   * * *   * ***    ** *

consensus_15703#0      TGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCG 263
consensus_15703#2      TGATTCTAGCTTGCTTCTGCAACAACAGTGGAAAGCTTGAAACTTGAAAAATTGCATCCG 287
consensus_15703#1      TGATACTAGCGTGCTTCTGCAACAACAGTGGAAA--------CTTGAAAAACTGCATCCG 284
consensus_15703#4      TTACATTACATTGATTCTACTCCT-CAGTCCATG-------------------------- 192
consensus_15703#3      TGATACTAGCGTGCTTCTGCAACAACAGTGGAAA--------CTTGAAAAACTGCATCCG 85
                       * *   **   ** **** *  *  ****  *                            

consensus_15703#0      CAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGCCTCTT 323
consensus_15703#2      CAAAGAACTGAAGTTGAACTAATCTTCTTTGTTCTCCAATGCTTCCTGCCCTTGC----- 342
consensus_15703#1      CAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCTT--- 341
consensus_15703#4      ------------------------------------------------------------
consensus_15703#3      CAAAGAACTGAAGTTGAACTAATCTTGTTTGTTCTCCAATGCTTCCAGCCCTTGCCTCTT 145
                                                                                   

consensus_15703#0      GAAAAGAAAACCCGAATAGCATGCTCGACAGCCCAGATCAAGATAATATGCAAATGGGCA 383
consensus_15703#2      ------------------------------------------------------------
consensus_15703#1      ------------------------------------------------------------
consensus_15703#4      ------------------------------------------------------------
consensus_15703#3      GAAAAGAAAACCCAAATAGCATGCTATCGCATTCCCATGCAACTGATGGAATCTTGTCCC 205
                                                                                   

consensus_15703#0      TGTATATGAAAGAAACTTCAGTTCGAGCTCAGTTGGAACAACACTTACTTGGATCATGAT 443
consensus_15703#2      ------------------------------------------------TTGGATCATGAT 354
consensus_15703#1      -------------------------GGATTTGTACTTCCATTGCTGGTCAGCATCATGAT 376
consensus_15703#4      ------------------------------------------------------------
consensus_15703#3      AACAAAAGAACTAAATCAGGAAT---ACTTGAATAATTCAGTCCTCATTCGACAAATCTC 262
                                                                                   

consensus_15703#0      GGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGC 503
consensus_15703#2      GGAGGCTGGAGCAACAGCAATCTTGTGGTGCTCACTGCTTGCCGGAGTGGGCTCTTGTGC 414
consensus_15703#1      GGAGGCTGGAGCATCAGCAACCTTGTGGTGCTCGCTGCTTGCTGGAGTGCGCTCTTGTGC 436
consensus_15703#4      ------------------------------------------------------------
consensus_15703#3      AAGTTGCAAACTTACTGGCAGAAGATTACATTTCTTAAAGATGCAAAACACTGTGAAATG 322
                                                                                   

consensus_15703#0      TGCACGCTATGAAGAAAGAAA-GTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAAC 562
consensus_15703#2      TGCACGCTATGAAGAAAGAAA-GTAGAGGAAAGGAGATGAGAAAGTTGGATCAGAACAAC 473
consensus_15703#1      TGCACGCTACGAAGAAAAAAAAGGAGAGGAAAGGAGCTGAGAAAATTGGATCGAAACAAC 496
consensus_15703#4      ------------------------------------------------------------
consensus_15703#3      TAATTGATGTAAAGAAAGATGAGTAAATTAAGACAGGATAAAACATATTTTTACGAACAC 382
                                                                                   

consensus_15703#0      TAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAG 622
consensus_15703#2      TAATGCAAGACGGAGACAACGGCGTGCGGTGAGAGAGGAGGCTCCGTCGAGCTCGTCGAG 533
consensus_15703#1      TTATGCAAGACGGAGACAACGGCGTGTGGTGAGAGAGGAGGCTCCGTCGAGCTTGTCGAG 556
consensus_15703#4      ------------------------------------------------------------
consensus_15703#3      TTTCAAGTAATAAATCCCCCCTTGTCTCGTCC---------------------------- 414
                                                                                   

consensus_15703#0      AGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGG 682
consensus_15703#2      AGCGGTAGCTGTTGGGTGCTTGCTGTCGACCGGTTGCTGGAGCTCGAGCTTTGGTTGAGG 593
consensus_15703#1      AGCGGCAGCTGTCGGGTGCTTGCTGGCGACCGGTTGCTAGAGCTCGAGGTTTGGTCAAGG 616
consensus_15703#4      ------------------------------------------------------------
consensus_15703#3      ------------------------------------------------------------
                                                                                   

consensus_15703#0      AAAGGGAAGGGGCCGCCG-------------CCGCGCGCCGGCCGGCCGCTGGGAAGAAG 729
consensus_15703#2      AAAGGGAAGGGGCCGCCG-------------CCGCGCGCCGGCCGGCCGCTGGGAAGAAG 640
consensus_15703#1      AAAGGGCAGGGGCCGCCGTGCCGGCCGGCCGCCGCACGCCGGCCGGCCGTTGGGGTGAAG 676
consensus_15703#4      ------------------------------------------------------------
consensus_15703#3      ------------------------------------------------------------
                                                                                   

consensus_15703#0      AAAAAC-------TTTCTACTCCTTCAGTCCAT--------------------------- 755
consensus_15703#2      AAAAACGAGAGGATGTGGTTTGCTTGAGTTTGGAGAA----------------------- 677
consensus_15703#1      AAAAACGAGAGGATGTGGTTTGCTTGAGCTGTGGAGAAGATAAGGTGGGCCCAACATTTA 736
consensus_15703#4      ------------------------------------------------------------
consensus_15703#3      ------------------------------------------------------------
                                                                                   

consensus_15703#0      -------
consensus_15703#2      -------
consensus_15703#1      TTGGGCA 743
consensus_15703#4      -------
consensus_15703#3      -------
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)