These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1206 fasta sequence [TTCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG-AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA-GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG-TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT-CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCA-CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG-AAATG-CCCTACTTGC-AGAAAGA-GTCTGAGGGCGAACAAT-T-TCCA-CCGTATTTACCTT-CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA-GGAGTTCTCCCATAACGTGTACCA-TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTAAAAATGAAAAAACTCGTTAAAAAAAAAAAAAAAA] [+] EMBL CF278445 [TTCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTG ] [+] EMBL CF280837 [TTCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGAT AAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAANGTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGATCCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACT ] [+] EMBL CF318488 [TTCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTATCAA ] [+] EMBL CF280106 [ TCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG AAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTG ] [+] EMBL AK073887 [ CTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCA CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTG ] [+] EMBL CF294695 [ TTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGGCAAGATAAAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGGCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCNAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCNCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAA ] [+] EMBL OSS14681A [ TCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAGAAAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGNTCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATT ] [+] EMBL OSC14811 [ tttggggAATAAATCGCGGTCAAGATAAAAAAAAAAG AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAGGATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTTAGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGC ] [+] EMBL AK104052 [ AGTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCA CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCAAGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTG ] [+] EMBL CA305678 [ ACTCGGCGTGCCCCAAGAAGGCAATCACAAGATGATCCTGGTGATAAA GTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCG TCGCGCGGTGCCGACCTCCACTGGTGCGCGTGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCA CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGA ] [+] EMBL CA763292 [ TGCCGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAATTTGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTG ] [+] EMBL C28195 [ GGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGAT CTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGNTTGAAGACTAGCAATNAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGNCCTCCACAACAATTTGCGGCCATATCTTCTGCA CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTNAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTNGATGTACCca ] [+] EMBL AU163266 [ GGAATTAGATGCTA CCGGGAA GGNAC AACGTCAAA GGTTGCACNTGTTATACA TGCTTNTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCAATGAGCNTCNTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCA CGACATGCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTAAAAA ] [+] EMBL BI806380 [ nCAC ACATATTGCGGCCANATCGTCTGCATCGACATGCATCAAGCAAGCCATCCAGATTCAGAAGAAAATGCCCCTACTTGCAAGNAAGAGGTCTGAGGGCGAACCATGTGTCCA CCGTATTTACCTT CCAAACTCTGATA TTAAGGCTCATTGGATGTACCCAAGGAACTTCTGNCAGCAGCCACAGCATCCTCCAATCTAATATATTCAGAGGAACANGGAGTTCTCCCATAACGTGTACCACTTTTGCTGTGGAATTGTGTCACGGC AAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACAC ACCCCACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTA CCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTAaaaaaaaaa ] [+] EMBL AU164557 [ GCATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGGTGTATTTACCATGCGTTTGGCCATGT CCTTACCTTCTCTtc ] [+] EMBL AU164558 [ CATCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTACTCTTGAAAAAA ] [-] EMBL CF329184 [ TCAAGCAAGCCATCCAGATTCAGAAG AAATG CCCTACTTGC AGAAAGA GTCTGAGGGCGAACAAT T TCCANCCGTATTTACCTTCCCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTTTGGCAGCAGCAGCAGCATCCTCCAATTTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTAaaaaaa ] [+] EMBL AA752505 [ cgagGAAAGA GTCTGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACAAGGAGCTCATCAGCTGCAGGTGACAACTCTGG ] [+] EMBL D43165 [ TGAGGGCGAACAAT T TCCA CCGTATTTACCTT CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTtc ] [+] EMBL CA756559 [ GGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATA GTTGATGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTACTCTTGCTTGTACTCGTTAAAAAAAAAAAAAAAA] [-] EMBL CF294696 [ AACA GGAGTTCTCCCATAACGTGTACCA TTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTTTGGTTTAGGCTACCGAATGGCCTCTTTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCAATACATGTTTAAAAA AAAAA ] consensusID : consensus_15709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [CGCCGCTGGATTCGAGATTTCGACCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGAAGGCAATCACAAGATGGTCCTGGTGATAAAGTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTCGCGCGGTGCCGACCTCCACTGGTGCGCGTGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGATCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCACGACATGCATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCATCAACAAGCATCTAGAAAAAAAA] [+] EMBL BI799715 [CGCCGCTGGATTCGAGATTTCGACCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGTCAGCGGCACTCGGCGTGCCCCAAGAAGGCAATCACAAGATGGTCCTGGTGATAAAGTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTCGCGCGGTGCCGACCTCCACTGGTGCGCGTGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGCAGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCCTGTGGCAGTAGTTGATCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGTTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAGCATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCACGACATGCATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCATCAACAAGCATCTAGAAAAAAAA] consensusID : consensus_15709#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [CATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCCTACTTGCAGAAAGAGTCTGAGGGCGAACAATTTCCACCGTATTTACCTTCCAAACTCTGATAGTTAAGGAACTTTTGNCAGCAGCAGCAGCATCCTCCAATTTTAATATATTCAGAGGAACAGGAGTTCTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTACTCTTGCTTGTACTCAAAAA] [-] EMBL CF280105 [CATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCCTACTTGCAGAAAGAGTCTGAGGGCGAACAATTTCCACCGTATTTACCTTCCAAACTCTGATAGTTAAGGAACTTTTGNCAGCAGCAGCAGCATCCTCCAATTTTAATATATTCAGAGGAACAGGAGTTCTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCATCCAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTGGTTTAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCTTCTCTCCATAGTTGTTGACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTACTCTTGCTTGTACTCAAAAA] consensusID : consensus_15709#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence [CATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCCTACTTGCAGAAAGAGTCTGAGGGCGAACAATTTCCACCGTATTTACCTTCCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACAGGAGTTCTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCACCCAAGGCTACTGTTGTTTGAAAGAAAATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTAAAAAAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCGTCTTTCTAAAAAAAAAAAAAAAAACAAAGTCATGCCGTTACGTAGCGTATCGTTGA] [-] EMBL CF280838 [CATCAAGCAAGCCATCCAGATTCAGAAGAAATGCCCTACTTGCAGAAAGAGTCTGAGGGCGAACAATTTCCACCGTATTTACCTTCCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAACTTCTGGCAGCAGCAGCAGCATCCTCCAATCTAATATATTCAGAGGAACAGGAGTTCTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGACCCGCATGTTCACCCAAGGCTACTGTTGTTTGAAAGAAAATGCATCACCAGGAGCTCATCAGCTGCAGGTGACAACTCTAAAAAAGGCTACCGAATGGCCTCTCTGCCTCCAAAGGATACACAACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGTTGTATTTACCATGCGTTTGGCCATGTACCTTACCGTCTTTCTAAAAAAAAAAAAAAAAACAAAGTCATGCCGTTACGTAGCGTATCGTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15709#2 ------------------------------------------------------------ consensus_15709#3 ------------------------------------------------------------ consensus_15709#0 TTCTTCTCTCTTCACTCGTGTTGAAATTGAAATAAATCGCGGTCAAGATAAAAAAAAAAG 60 consensus_15709#1 ------------------------------------------------------------ consensus_15709#2 ------------------------------------------------------------ consensus_15709#3 ------------------------------------------------------------ consensus_15709#0 AAAAAAAAAGAAGAAAAAAATCGCGGTCTCCTCCTCATCGAGCCGCGCGGCTGGATCGAG 120 consensus_15709#1 ------------------------------------------------------------ consensus_15709#2 ------------------------------------------------------------ consensus_15709#3 ------------------------------------------------------------ consensus_15709#0 GATTCGAGCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGA 180 consensus_15709#1 ------------------------------------------------------------ consensus_15709#2 ------------------------------------------------------------ consensus_15709#3 ------------------------------------------------------------ consensus_15709#0 GTACTGTCAGCGGCACTCGGCGTGCCCCAAGGAGGCAATCACAAGATGGTCCTGGTGATA 240 consensus_15709#1 ------------------------------------------------------------ consensus_15709#2 ------------------------------------------------------------ consensus_15709#3 ------------------------------------------------------------ consensus_15709#0 AAGTCGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTCGCGCGGTGC 300 consensus_15709#1 ------------------------------------------------------------ consensus_15709#2 ------------------------------------------------------------ consensus_15709#3 ------------------------------------------------------------ consensus_15709#0 CGACCTCCACTGGTGCGCGCGCCTCCCCCATTGATGTGGAAGCTCTGGATGATGAAGTGC 360 consensus_15709#1 ------------------------------------------------------------ consensus_15709#2 ------------------------------------------------------------ consensus_15709#3 ------------------------------------------------------------ consensus_15709#0 AGACATTGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGC 420 consensus_15709#1 ------------------------------------------------------------ consensus_15709#2 ------------------------------------------------------------ consensus_15709#3 ------------------------------------------------------------ consensus_15709#0 CTGTGGCAGTAGTTGATCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGG 480 consensus_15709#1 ------------------------------------------------------------ consensus_15709#2 ------------------------------------------------------------ consensus_15709#3 ------------------------------------------------------------ consensus_15709#0 TTGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTA 540 consensus_15709#1 ------------------------------------------------------------ consensus_15709#2 ------------------------------------------------------------ consensus_15709#3 ------------------------------------------------------------ consensus_15709#0 GCAATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGT 600 consensus_15709#1 ------------------------------------------------------------ consensus_15709#2 -------------------------------------------------CATCAAGCAAG 11 consensus_15709#3 -------------------------------------------------CATCAAGCAAG 11 consensus_15709#0 TGGAGGAGCCCTCCACAACAATTTGCGGCCATATCTTCTGCACGACATGCATCAAGCAAG 660 consensus_15709#1 -------------------------------------CGCCGCTGGATTCGAGATTTCGA 23 * * consensus_15709#2 CCATCCAGATTCAGAAGAAATGCCCTACT--TGCAGAAAGAGTCTGAGGGCGAACAATTT 69 consensus_15709#3 CCATCCAGATTCAGAAGAAATGCCCTACT--TGCAGAAAGAGTCTGAGGGCGAACAATTT 69 consensus_15709#0 CCATCCAGATTCAGAAGAAATGCCCTACT--TGCAGAAAGAGTCTGAGGGCGAACAATTT 718 consensus_15709#1 CCAGGTTGATTTCAGAGTTGAGTGCCACTGATTCAGCTCCAAAGTTAGCATGAGTACTGT 83 *** **** ** * * *** * *** * * ** ** * * * consensus_15709#2 CCACCGTATTTACCTT-CCAAACTCTGATAGTTAAGG--------------------AAC 108 consensus_15709#3 CCACCGTATTTACCTT-CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAAC 128 consensus_15709#0 CCACCGTATTTACCTT-CCAAACTCTGATAGTTAAGGCTCATTGGATGTACCAAAGGAAC 777 consensus_15709#1 CAGCGGCACTCGGCGTGCCCCAAGAAGGCAATCACAA---GATGGTCCTGGTGATAAAGT 140 * * * * * * * ** * * * * * * consensus_15709#2 TTTTGNCAGC--AGCAGCAGCATCCTCCAATTTTAATATATTCAGAGGAACAGGA--GTT 164 consensus_15709#3 TTCTGGCAGC--AGCAGCAGCATCCTCCAATCT-AATATATTCAGAGGAACAGGA--GTT 183 consensus_15709#0 TTCTGGCAGC--AGCAGCAGCATCCTCCAATCT-AATATATTCAGAGGAACAGGA--GTT 832 consensus_15709#1 CGTTGTGAACCTGGACGCGATCTCCTCCCCAGTGGTTGGAAGCCGTCGCGCGGTGCCGAC 200 ** * * * ** ****** * * * * * * * * * consensus_15709#2 CTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGAC 224 consensus_15709#3 CTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGAC 243 consensus_15709#0 CTCCCATAACGTGTACCATTTTGCTGTGGAATTGTGTCACGGCAAAATGACCACCTAGAC 892 consensus_15709#1 CTCCACTGGTGCGCGTGCCTCCCCCATTGA--TGTGGAAGCTCTGGATGATGAAGTGCAG 258 **** * * * * * * ** **** * * **** * * * consensus_15709#2 CCGCATGTTCATC-CAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATC 283 consensus_15709#3 CCGCATGTTCACC-CAAGGCTACTGTTGTTTGAAAGAAAATGCATCACCAGGAGCTCATC 302 consensus_15709#0 CCGCATGTTCATC-CAAGGCTACTGTTGTTTGTATGTAGATGCATCACCAGGAGCTCATC 951 consensus_15709#1 ACAT-TGTCCGCTTCGCAAGTGCCTCCTCCGAGAAGGAACCGGAGAACTAGGAGGCAGCC 317 * *** * * * * * * * * * ** ***** * consensus_15709#2 AGCTGCAGGTGACAACTCTGGTTTAG--GCTA-CCGAATGGCCTCTCTGCCTCCAAAGGA 340 consensus_15709#3 AGCTGCAGGTGACAACTCTAAAAAAG--GCTA-CCGAATGGCCTCTCTGCCTCCAAAGGA 359 consensus_15709#0 AGCTGCAGGTGACAACTCTGGTTTAG--GCTA-CCGAATGGCCTCTCTGCCTCCAAAGGA 1008 consensus_15709#1 TGTGGCAGTAGTTGATCTGGAAGTAGATGCTAGCCGGGAAGGGAACAAACGTCAAAGGGT 377 * **** * * ** **** *** * * ** ** ** consensus_15709#2 TACAC--AACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGT 398 consensus_15709#3 TACAC--AACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGT 417 consensus_15709#0 TACAC--AACAAAACTAACTATAGTCCCCATTGGTTAGATTTATCTAGTTTGTGTACTGT 1066 consensus_15709#1 TGCACCTGTTATACACTGCCTCTCTCCAGAAAGGGGAGAAGGGTCCAGCTTGAAGACTAG 437 * *** * * * *** * ** *** ** ** *** *** consensus_15709#2 TGTA---TTTACCATGCGTTTGGCCATGTACCTTACCTTC-----TCTCCATAGTTGTTG 450 consensus_15709#3 TGTA---TTTACCATGCGTTTGGCCATGTACCTTACCGTC-----TTTCTAAAAAAAAAA 469 consensus_15709#0 TGTA---TTTACCATGCGTTTGGCCATGTACCTTACCTTC-----TCTCCATAGTTGTTG 1118 consensus_15709#1 CATGAGCCTCCTAAGGCAAAGGAACCGGTTTTTAACTGTCCGGTGTGTTGGAACAAGTTG 497 * * * ** * * ** * ** ** * * * consensus_15709#2 ACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTACTCTTG 510 consensus_15709#3 AAAAAAACAAAGTCATGCCGTTACGTAGCGTATCGTTGA--------------------- 508 consensus_15709#0 ACGTAGCCTTGAATCAGCTTGAAATCGTGATGATGTTAACGCATTACATGTTTAAAAATG 1178 consensus_15709#1 GAGGAGCCCTCCACAACAATTTGCG-GCCATATCTTCTGCACGACATGCATCAAGCAAGC 556 * * * * consensus_15709#2 CTTGTACTCAAAAA--------------------------------- 524 consensus_15709#3 ----------------------------------------------- consensus_15709#0 AAAAAACTCGTTAAAAAAAAAAAAAAAA------------------- 1206 consensus_15709#1 CATCCAGATTCAGAAGAAATGCCATCAACAAGCATCTAGAAAAAAAA 603 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||