These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15715#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 2124 fasta sequence [ACTCCGGAGGCGAAGGGTCGGAGCCACTCGCTACTT------GCCGCCGCCGCCGCCGCCGCCGTCGTCGAGGGCGAGGCAGCGGCGCTCCGCCTCGGCTCGGGCGGCGCACCGGCGCCTCTGAGCGGCCACGCCCCGGTCTCCGCCATCCGCCCGTCCGCCTCTCCGTTCGACCTCGTCCCGTGGTCCCTCCCTACGCCGCCGTCGACCGCCGTTTCTGGTAATCTCAGGAACTTGAAATGGCAGACGAGGAGCATGCTCCAACGTCTAGGAAGAGGGTTGCAGGTACCCAAATCAACAAGGATAATCCTGAGCCTGATGATGACTCAACTGAGCAAGAGATGGGGACATTTAAGAGAGCTAGTGAGGAAGTGATGGCAACACGGAGAATTGTAAAGGTTCGACGCCAGCAGCCCTCATCAGCTCCTTCTAATCCTTTCTCTGCAATCAGATTTACCCCCAGTGATACCAGCGCCCAAGCAACTATCCCTGTCTCAGAGCCTCAACCTTCTGATGTCATTACAGCGAATGCAAAGGATAGTTCAAGTGAGAAAGCTGATGAGGGAAGCAATGGCAGTGGGAAAGATGCTTTACCTGTAACTGACAAGAGTGCAGGTTCTAGTGAGGTAGCTGAGACAGAAAAGGATGGATCAGATCTGAAAGGATCAGATGAAAAAGCCAAGTCCAGTGACTCAATTGAACCACCTTCTCAACCTGTTGAGACCACTGACGAAACAAAAGACTTGGGGGGCGGATCAGTGGTAGCTGGAGAGGCCAAGGAAGATA-ACAGCAAGGCATCTGATATCGAGGACAAAACAGCAAAAGAGGGAGATGCTGAAGAAGAGGATGGAGCAAATGAGGCTGGAGCTGAAGACAAAATTAGCAAGGGTGATGATGAGAAGAAAGATGGAGATGAATCAGAGACAAAGGATGGATCGTCTGAGGAGCAGAAGGATGCTGATAACAAGGGGCAGTCGTCATCACCAACACCCCTTTTCTCTTTCAAGAACCTGTCGAGTGGCCAAAATGCCTTCACAGGACTGGCTGGAACTGGATTTTCAGGCTCTTCATTTTCATTTGGATCAGGCTCTAAAGAAAGCTCGAGTGCTCCCCTGTTTGGGCTAAAGACTGATGGCTCATCATTCCCATCTTTTAGTATTGGTGCTTCGAATAATGGGAGTTCCTCCCCTGCGCTTGCGACTTCGGCAGAAGCTCCCAAGAAATTTGCTATGCCAGAGGGCCCAGTTGAAACTGGTGAAGAGAATGAGAAGGCCATATTCACAGCCGACTCAGCATTGTATGAATACTTGGATGGGGGTTGG-AAAGAAAGAGGAAAGGGGGAACTAAAGTTGAACATCCCAGTATCTGGTGGCGAGAGGTCTCGTCTCGTCATGAG-AACCAAGGGCAATTACAGGCTAGTTCTTAACGCAAGCCTTTACGAGGACATGTCGCTGAAGGACATGGACAAGAAGGGCGTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGAGCGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGAGGAGTTCAAAG-CTGCGGTGGAGATGCA-CAAGGCG-AAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTCCCCGAAGGC-A-TCAGATGATTGAAGGTTGAAGCCCAACTCTCGCCAC-AATGCACCGAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACATACCGTACCATGTCACTACGCTGCCTTAAGAT-GATGATGCGCTTGCATAC-GGTTTCCTGTCGCTGTTTTTGGAACAGTGGGTAGAGTCCTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTATCAATCGGTGTTGTACTGGTGTATCATGTATCCGTGATCTGCAGCGTCAGCGTCGCCTTACCTTTACCTTCTACTGTTGCTGATAATCTTTTCTTTGAGAAACTTTTTGCTGATGATAATAAGAGTACCTTTTGTTGGAAAAA] [+] EMBL AK101703 [ACTCCGGAGGCGAAGGGTCGGAGCCACTCGCTACTT GCCGCCGCCGCCGCCGCCGCCGTCGTCGAGGGCGAGGCAGCGGCGCTCCGCCTCGGCTCGGGCGGCGCACCGGCGCCTCTGAGCGGCCACGCCCCGGTCTCCGCCATCCGCCCGTCCGCCTCTCCGTTCGACCTCGTCCCGTGGTCCCTCCCTACGCCGCCGTCGACCGCCGTTTCTGGTAATCTCAGGAACTTGAAATGGCAGACGAGGAGCATGCTCCAACGTCTAGGAAGAGGGTTGCAGGTACCCAAATCAACAAGGATAATCCTGAGCCTGATGATGACTCAACTGAGCAAGAGATGGGGACATTTAAGAGAGCTAGTGAGGAAGTGATGGCAACACGGAGAATTGTAAAGGTTCGACGCCAGCAACCCTCATCAGCTCCTTCTAATCCTTTCTCTGCAATCAGATTTACCCCCAGTGATACCAGCGCCCAAGCAACTATCCCTGTCTCAGAGCCTCAACCTTCTGATGTCATTACAGCGAATGCAAAGGATAGTTCAAGTGAGAAAGCTGATGAGGGAAGCAATGGCAGTGGGAAAGATGCTTTACCTGTAACTGACAAGAGTGCAGGTTCTAGTGAGGTAGCTGAGACAGAAAAGGATGGATCAGATCTGAAAGGATCAGATGAAAAAGCCAAGTCCAGTGACTCAATTGAACCACCTTCTCAACCTGTTGAGACCACTGACGAAACAAAAGACTTGGGGGGCGGATCAGTGGTAGCTGGAGAGGCCAAGGAAGATA ACAGCAAGGCATCTGATATCGAGGACAAAACAGCAAAAGAGGGAGATGCTGAAGAAGAGGATGGAGCAAATGAGGCTGGAGCTGAAGACAAAATTAGCAAGGGTGATGATGAGAAGAAAGATGGAGATGAATCAGAGACAAAGGATGGATCGTCTGAGGAGCAGAAGGATGCTGATAACAAGGGGCAGTCGTCATCACCAACACCCCTTTTCTCTTTCAAGAACCTGTCGAGTGGCCAAAATGCCTTCACAGGACTGGCTGGAACTGGATTTTCAGGCTCTTCATTTTCATTTGGATCAGGCTCTAAAGAAAGCTCGAGTGCTCCCCTGTTTGGGCTAAAGACTGATGGCTCATCATTCCCATCTTTTAGTATTGGTGCTTCGAATAATGGGAGTTCCTCCCCTGCGCTTGCGACTTCGGCAGAAGCTCCCAAGAAATTTGCTATGCCAGAGGGCCCAGTTGAAACTGGTGAAGAGAATGAGAAGGCCATATTCACAGCCGACTCAGCATTGTATGAATACTTGGATGGGGGTTGG AAAGAAAGAGGAAAGGGGGAACTAAAGTTGAACATCCCAGTATCTGGTGGCGAGAGGTCTCGTCTCGTCATGAG AACCAAGGGCAATTACAGGCTAGTTCTTAACGCAAGCCTTTACGAGGACATGTCGCTGAAGGACATGGACAAGAAGGGCGTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGAGCGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGAGGAGTTCAAAG CTGCGGTGGAGATGCA CAAGGCG AAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTCCCCGAAGGC A TCAGATGATTGAAGGTTGAAGCCCAACTCTCGCCAC AATGCACCGAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACATACCGTACCATGTCACTACGCTGCCTTAAGAT GATGATGCGCTTGCATAC GGTTTCCTGTCGCTGTTTTTGGAACAGTGGGTAGAGACCTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTATCAATCGGTGTTGTACTGGTGTATCATGTATCCGTGATCTGCAGCGTCAGCGTCGCCTTACCTTTACCTTCTACTGTTGCTGATAATCTTTTCTTTGAGAAACTTTTTGCTGATGATAATAAGAGTAC ] [+] EMBL AU166436 [ AAGGGTCGGAGCCACTCGCTACTT GCCGCCGCCGCCGCCGCCGCCGTCGTCGAGGGCGAGGCAGCGGCGCTCCGCCTCGGCTCGGGCGGCGCACCGGCGCCTCTGAGCGGCCACGCCCCGGTCTCCGCCATCCGCCCGTCCGCCTCTCCGTTCGACCTCGTCCCGTGGTCCCTCCCTACGCCGCCGTCGACCGCCGTTTCTGGTAATCTCAGGAACTTGAAATGGCAGACGAGGAGCATGCTCCAACGTCTAGGAAGAGGGTTGCAGGTACCCAAATCAACAAGGATAATCCTGAGCCTGATGATGACTCAACTGAGCAAGAGATGGGGACATTTAAGAGAGCTAGTGAGGAAGTGATGGCAACACGGAGAATTGTAAAGGTTCGACGCCAGCAGCCCTCATCAGCTCCTTCTAATCCTTTCTCTGCAATCAGATT ] [+] EMBL CB626712 [ gccGGTCCGAGCCACTCGCTACTTGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCGTCGAGGGCGAGGCAGCGGCGCTCCGCCTCGGCTCGGGCGGCGCACCGGCGCCTCTGAGCGGCCACGCCCCGGTCTCCGCCATCCGCCCGTCCGCCCCTCCGTTCGACCTCGTCCCGTGGTCCCTCCCTACGCCGCCGTCGACCGCCGTTTCTGGTAATCTCAGGAACTTGAAATGGCAGACGAGGAGCATGCTCCAACGTCTAGGAAGAGGGTTGCAGGTACCCAAATCAACAAGGATAATCCTGAGGCTGATGATGACTCCACTGAGCAAGAGATGGGGACATTTAAGAGAGCTAGTGAGGAAGTGATGGCAACACGGAGAATTGTAAAGGTTCGACGCCAGCAGCCCTCATCAGCTCCTTCTAATCCTTTCTCTGCAATCAGATTTACCCCCAGTGATACCAGCGCCCAAGCAACTATCCCTGTCTCAGAGCCTCAACCTTCTGATGTCATTACAGCGAATGCAAAGGATAGTTCAAGTGAGAAAGCTGATGAGGGAAGCAATGGCAGTGGGAAAGATGCTTTACCTGTAACTGACAAGAGTGCAGGTTCTAGTGAGGTAGCTGAGACAGAAAAGGATGGATCAGATCTGAAAGGATCAGATGAAAAAGCCAAGTCCAGTGACTCAATTGAACCACCTTCTCAACCTGTTGAGACCACTGACGAAGCAAAAGACTTGGGGGGCGGATCAGTGGTAGCTGGAGAGGCCAAGGAAGATANACAGC AGGCATCTGATATCGAGGACA ] [+] EMBL CF306125 [ GTCCCGTGGTCCCTCCCTACGCCGCCGTCGACCGCCGTTTCTGGTAATCTCAGGAACTTGAAATGGCAGACGAGGAGCATGCTCCAACGTCTAGGAAGAGGGTTGCAGGTACCCAAAT ] [+] EMBL CA757352 [ AGGACAAAACAGCAAAAGAGGGAGATGCTGAAGAAGAGGATGGAGCAAATGAGGCTGGAGCTGAAGACAAAATTAGCAAGGGTGATGATGAGAAGAAAGATGGAGATGAATCAGAGACAAAGGATGGATCGTCTGAGGAGCAGAAGGATGCTGATAACAAGGGGCAGTCGTCATCACCAACACCCCTTTTCTCTTTCAAGAACCTGTCGAGTGGCCAAAATGCCTTCACAGGACTGGCTGGAACTGGATTTTCAGGCTCTTCATTTTCATTTGGATCAGGCTCTAAAGAAAGCTCGAGTGCTCCCCTGTTTGGGCTAAAGACTGATGGCTCATCATTCCCATCTTTTAGTATTGGTGCTTCGAATAATGGGAGTTCCTCCCCTGCGCTTGCGACTTCGGCAGAAGCTCCCAAGAAATTTGCTATGCCAGAGGGCCCAGTTGAAACTGGTGAAGAGAATGAGAAGGCCATATTCACAGCCGACTCAGCATTGTATGAATACTTGGATGGGGGTTGG AAAGAAAGAGGANAGGGGGAACTAAAGTTGAACATCCCAGTATCTGGTGGCGAGAGGTCTCGTCTCGTCATGAGAAACCAAGGGC ATTACAGGCTAGTTCT ] [+] EMBL BI813172 [ GTCGAGTGGCC AAATGCCTTCACAGGACTGGCTGGAACTGGATTTTCAGGCTCTTCATTTTCATTTGGATCAGGCTCTAAAGAAAGCTCGAGTGCTCCCCTGTTTGGGCTAAAGACTGATGGCTCATCATTCCCATCTTTTAGTATTGGTGCTTCGAATAATGGGAGTTCCTCCCCTGCGCTTGCGACTTCGGCAGAAGCTCCCAAGAAATTTGCTATGCCAGAGGGCCCAGTTGAAACTGGTGAAGAGAATGAGAAGGCCATATTCACAGCCGACTCAGCATTGTATGAATACTTGGATGGGGGTTGG AAAaa ] [+] EMBL CB660613 [ TTCATTTGGATCACGCTCTAAAGAAAGCTCGAGTGCTCCCCTGTTTGGGCTAAAGACTGATGGCTCATCATTCCCATCTTTTACTATTGGTGCTTCGAATAATGGGAGTTCCTCCCCTGCGCTTGCGACTTCGGCAGAAGCTCCCAAGAAATTTGCTATGCCAGAGGGCCCACTTGAAACTGGTGAAGAGAATGTTAACGCCATATTCACAGCCGACTCATCATTGGATGAATACTTGGATGGGGGTTGG AAAGAAAGAGGAAAGGGGGACCTACAGTTGAACATCCCACTATCTGGTGGCGAGAGGTCTCGTCTCGTCATGAC AACCAAGGGCAATTACAGGCTACTTCTTACCGCAAGCCTTTA ] [-] EMBL CB626713 [ TCCCCTGCGCTGNCGACTTCGGCAGAAGCTCCCAAGAAATTTGCTATGCCAGAGGGCCCAGTTGAAACTGGTGAAGAGAATGAGAAGGCCATATTCACAGCCGACTCAGCATTGTATGAATACTTGGATGGGGGTTGG AAAGAAAGAGGAAAGGGGGAACTAAAGTTGAACATCCCAGTATCTGGTGGCGAGAGGTCTCGTCTCGTCATGAG AACCAAGGGCAATTACAGGCTAGTTCTTAACGCAAGCCTTTACGAGGACATGTCGCTGAAGGACATGGACAAGAAGGGCGTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGAGCGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGAGGAGTTCAAAG CTGCGGTGGAGATGCA CAAGGCG AAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTCCCCGAAGGC A TCAGATGATTGAAGGTTGAAGCCCAACTCTCGCCAC AATGCACCGAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACATACCGTACCATGTCACTACGCTGCCTTAAGAT GATGATGCGCTTGCATAC GGTTTCCTGTCGCTGTTTTTGGAACAGTGGGTAGAGTCCTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCTCTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTAT ] [-] EMBL CB652886 [ CTTCGGCAGAAGCTCCCAAGAAATTTGCTATGCCAGAGGGCCCAGTTGAAACTGGTGAAGAGAATGAGAAGGCCATATTCACAGCCGACTCAGCATTGTATGAATACTTGGATGGGGGTTGG AAAGAAAGAGGAAAGGGGGAACTAAAGTTGAACATCCCAGTATCTGGTGGCGAGAGGTCTCGTCTCGTCATGAG AACCAAGGGCAATTACAGGCTAGTTCTTAACGCAAGCCTTTACGAGGACATGTCGCTGAAGGACATGGACAAGAAGGGCGTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGAGCGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGAGGAGTTCAAAG CTGCGGTGGAGATGCA CAAGGCG AAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTCCCCGAAGGC A TCAGATGATTGAAGGTTGAAGCCCAACTCTCGCCAC AATGCACCGAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACATACCGTACCATGTCACTACGCTGCCTTAAGAT GATGATGCGCTTGCATAC GGTTTCCTGTCGCTGTTTTTGGAACAGTGGGTAGAGTCCTGTGAAACTTTAAATTAAAAGTCCTGAAATCT TAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGGGTTTGATATTCTATTTGGGGATGAGATCTTTAT ] [+] EMBL BI805675 [ aTTG AACT GTGAAGAGAATGAGAA GCCATATT ACANCCGACTCAGCATTGTATG ATACTTGGAT GGGGTTGGTAAAGAAAGA GAAAGGGGGAACTAAAGTTGAACATCCCAGTATCT GTGGCGAGAGGTCTCGTCTCGTCATGAG AACCAA GGCAATTACAGGCTAGTTCTTAACGCAA CCTTTACGAGGACATGTCGCTGAAGGACATGGACAAGAAGGGCGTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGAGCGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGAGGAGTTCAAAG CTGCGGTGGAGATGCACCAAGGCG AAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTCCCCGAAGGC A TCAGATGATTGAAGGTTGAAGCCCAACTCTCGCCACAAATGCACCGAGTCCATGAAGTGGAGGA CTGAGATACGCTTCTTGTTCTTTT GGGGGGTTTATTTAAGTAACATACCGTACCATGTCACTACGCT CCTTAAGAT GATGATGCGCTTGCATAC GGTTTCCTGTCGCTGTTTTTGGAACAGTGGGTAGAGTCCTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTAaaaaaaaaa ] [+] EMBL OS1321751 [ GGTGAAGAGAATGAGAAGGCCATATTCACAGCCGACTCAGCATTGTATGAATACTTGGATGGGGGTTGG AAAGAAAGAGGAAAGGGGGAACTAAAGTTGAACATCCCAGTATCTGGTGGCGAGAGGTCTCGTCTCGTCATGAG AACCAAGGGCAATTACAGGCTAGTTCTTAACGCAAGCCTTTACGAGGACATNTCGCTGAAGGACATGGACAAGAAGGGCGTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGAGCGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGAGGAGTTCAAAGNTTGCGGTGGAGATGCA CAAGGCGAAAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTNCCCG AGGC ATTCAGATGATTGAAGGT ] [+] EMBL C28990 [ TTAACGCAAGCCTTTACGAGGACATGTCGCTGAAGGACATGGACAAGAAGGGCGTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGAGCGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGAGGAGTTCAAAG CTGCGGTGGAGATGCA CAAGGCG AAAAAGGCGTCCGNCACACTCAAGACACCCNNGANCT CCCGGAGGCAA TCAGATGATTGAAGGTTGAAGCCCAACTCTCGNCAC AATGCACCGAGTCCATGAAGTGGAGGAGCTGAGATACGNTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTACCATACCGTACCATGTCACTACGTTGCCTTAAGATGGTTGTTGCGCTT ] [+] EMBL C27931 [ CTGAAGGACATGGACAAGAAGGGCGTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGNCGGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGAGGAGTTCAAAG CTGCGGTGGAGATGCA CAAGGCG AAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTCCCCGAA GC A TCANATGATTGAAGGTTGAAGCCCAACTCTCGCCAC AATGCACCGAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACATACCGTACCATGTCACTACGCTGCCTTAAGAT GATGATGCGCTTTCATACGGGTTTCCTGTCGCTGTTTTTTGGACAGTGGGTAGAGTCCTGTGAAA TTTAAATTAAAA NCCTG AATCTTAGTAAGTGGGGA ATG ] [+] EMBL AU166437 [ GTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGAGCGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGAGGAGTTCAAAG CTGCGGTGGAGATGCA CAAGGCG AAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTCCCCGAAGGC A TCAGATGATTGAAGGTTGAAGCCCAACTCTCGCCAC AATGCACCGAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACATACCGTACCATGTCACTACGCTGCCTTAAGAT GATGATGCGCTTGCATAC GGTTTCCTGTCGCTGTTTTTGGAACAGTGGGTAGAGTCCTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTAaaaaaa ] [+] EMBL AU182052 [ GCA CAAGGCG AAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTCCCCGAAGGC A TCAGATGATTGAAGGTTGAAGCCCAACTCTCGCCAC AATGCACCGAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACATACCGTACCATGTCACTACGCTGCCTTAAGAT GATGATGCGCTTGCATAC GGTTTCCTGTCGCTGTTTTTGGAACAGTGGGTAGAGTCCTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTATCAATCGGTGTTGTACTGGTGTATCAaaaaa ] [+] EMBL BQ907760 [ CCGAAGGC A TCAGATGATTGAAGGTTGAAGCCCAACTCTCGCCAC AATGCACCGAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACATACCGTACCATGTCACTACGCTGCCTTAAGAT GGTGATGCGCTTGCATAC GGTTTCCTGTCGCTGTTTTTGGAACAGTGGGTAGAGTCCTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTATCAATCGGTGTTGTACTGGTGTATCATGTATCCGTGATCTGCAGCGTCAGCGTC CCTTACCTTTACCTTCTACTGTTGCTGATAATCTTTTCTTTGAGAAACTTGTTGCTGATGATAATAAGAGTACCTTTTGTTGGAAAAA] consensusID : consensus_15715#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 604 fasta sequence [CTTTACGAGGACATGTCGCTGAAGGACATGGACAAGAAGGGCGTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGAG-CGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGA-GGA-GTTCAAAGCTGCGGTGGAGATGCACAAGGC-GAA-AAAGGCGTCCGGCACACTCA-AGACACCCGAGAACTCCCCGA-AGGCATCAGATG-ATTGAAGGTTGAAGCCC-AACTCTCGCCACAATGCACC-GAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACAT-ACCGTACCATGTCACTACGCTGCCTTAAGATGGTGATGCGC-TTGCATACGGTTTC-C-T-GTC-GCTGTTTTTGGAACA-GTGGGTAGAGTC-CTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF303144 [CTTTACGAGGACATGTCGCTGAAGGACATGGACAAGAAGGGCGTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGAG CGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGA GGA GTTCAAAGCTGCGGTGGAGATGCACAAGGC GAA AAAGGCGTCCGGCACACTCA AGACACCCGAGAACTCCCCGA AGGCATCAGATG ATTGAAGGTTGAAGCCC AACTCTCGCCACAATGCACC GAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACAT ACCGTACCATGTCACTACGCTGCCTTAAGATGATGATGCGC TTGCATACGGTTTC C T GTC GCTGTTTTTGGAACA GTGGGTAGAGTC CTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTATCAAAAAAAAAAAAAA ] [+] EMBL BQ907369 [ ACGAGGACATGTCGCTGAAGGACATGGACAAGAAGGGCGTGACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGA CGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGA GGA GTTCAAAGCTGCGGTGGAGATGCACAAGGC GAA AAAGGCGTCCGGCACACTCA AGACACCCGAGAACTCCCCGA AGGCATCAGATG ATTGAAGGTTGAAGCCC AACTCTCGCCACAATGCACC GAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACAT ACCGTACCATGTCACTACGCTGCCTTAAGATGGTGATGCGC TTGCATACGGTTTC C T GTC GCTGTTTTTGGAACACGTGGGTAGAGTC CTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTATCAAAAAA ] [+] EMBL BM419553 [ AGCATCGGCGACTCGCAGAGCCGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGA GGA GTTCAAAGCTGCGGTGGAGATGCACAAGGC GAA AAAGGCGTCCGGCACACTCA AGACACCCGAGAACTCCCCGA AGGCATCAGATG ATTGAAGGTTGAAGCCC AACTCTCGCCACAATGCACC GAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACAT ACCGTACCATGTCACTACGCTGCCTTAAGATGGTGATGCGC TTGCATACGGTTTC C T GTC GCTGTTTTTGGAACA GTGGGTAGAGTC CTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTATCAAAAA ] [+] EMBL BQ907436 [ CGGGCTTGCCACATTTGCTCTGAAGTTCAGGGATACCAGCATCAGGGA GGA GTTCAAAGCTGCGGTGGAGATGCACAAGGC GAA AAAGGCGTCCGGCACACTCA AGACACCCGAGAACTCCCCGA AGGCATCAGATG ATTGAAGGTTGAAGCCC AACTCTCGCCACAATGCACC GAGTCCATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACAT ACCGTACCATGTCACTACGCTGCCTTAAGATGGTGATGCGC TTGCATACGGTTTC C T GTC GCTGTTTTTGGAACA GTGGGTAGAGTC CTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTATCAAAAA ] [+] EMBL BI812689 [ atTTCAGGGATACCAGCATCAGGGAGGGAGGTTCAAA CT CGGTGGAGATGCACAAGGCAGAATAAAGGCGTCCAGCACACTCATAGACACCCGAGAACTCCCCGATAGGCATCAGATGTATTGAAGGTTGAAGCCCAAACTCTCGCCACAATGCACCAGAGTCCATGAATTGGAGGAGCTGAGATACGCTTCTTGTTCTTTT GGGGGGTTTATTTAAGTAACAT ACCGTACCATGTCACTACGCTGCCTTAAGATGGTGATGCGCATTGCATACGGTTTCAC TGGTC GCTGTTTTTGGAACA GTGGGTAGAGTCACTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATCCCGCTGAGTGTTTGATATTCTATTTGCGGATGAGATCTTTATCAAAAAAAAAAgga ] [+] EMBL BI813228 [ CGGCACACTCA AGACACCCGAG ACTCCCCGA AGGCATCAGATG ATTGAA GTTGAAGCCC AACTCTCGCCACAATGCACC GAGTCCATGAAGTGGAGGA CTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACATGACCGTACCATGTCACTACGCTGCCTTAAGATGGTGATGCGC TTGCATACGGTTTC CAT GTCAGCTGTTTTTGGAACA GTGGGTAGAGTCACTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACTCCTATTGCCTAaaaaaaaaa ] [+] EMBL AU092767 [ TCTTGTTCTTTTGGGGGGGTTTNTTTAAGTAACAT ACCGTACCATNTCACTACGCTNCCTTAAGATGATGATNCGC TTGCATNCGGTTTC C T GTC GCTGTTTTTGGAACA GTGGGTAGAGTC CTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGACNCCTATTGCCTACTGTGATGNCCCCNGCGGACACTCACTAAGAGTATGCCNCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTNTCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15715#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [GGGAGTCTGAGAGAGATGGACAAATGAGCTGACTGAACCAAATTACCAAGGGTGATGATGAGAAGAAAGATGGAGATGAATCAGAACAAAGATGATCGTCTGAGGAGCAGAAGGATGCTGATAACAAGGGCCAGTCGTCATCACCAACACCCCTTTTCTCTTTCAAGAACCTGTCGAGTGCCAAATCCCTTCACAGGACTGCTGGAACTGGATTTTCAGGCTTTCATTTTCATTTGGATCAGGCTTAAAGAAAGCTCGAGTGTTCCTGTTTGGGCTAAAGACTGAGGCTCATCATTCCCATCCTTAGTATGGCTTCGAATAATGGGATTCTCCTGCGCTTGCGATTTCGCCAGAAGTTCCCAAGAATTGTTACCAGAGGCCCCAGTGAACTGTGAAGAGATGAGAGCCATATCACACCCGACCCTGTATGAAACTGATGGGTGGAA] [+] EMBL BI802994 [GGGAGTCTGAGAGAGATGGACAAATGAGCTGACTGAACCAAATTACCAAGGGTGATGATGAGAAGAAAGATGGAGATGAATCAGAACAAAGATGATCGTCTGAGGAGCAGAAGGATGCTGATAACAAGGGCCAGTCGTCATCACCAACACCCCTTTTCTCTTTCAAGAACCTGTCGAGTGCCAAATCCCTTCACAGGACTGCTGGAACTGGATTTTCAGGCTTTCATTTTCATTTGGATCAGGCTTAAAGAAAGCTCGAGTGTTCCTGTTTGGGCTAAAGACTGAGGCTCATCATTCCCATCCTTAGTATGGCTTCGAATAATGGGATTCTCCTGCGCTTGCGATTTCGCCAGAAGTTCCCAAGAATTGTTACCAGAGGCCCCAGTGAACTGTGAAGAGATGAGAGCCATATCACACCCGACCCTGTATGAAACTGATGGGTGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15715#0 ACTCCGGAGGCGAAGGGTCGGAGCCACTCGCTACTTGCCGCCGCCGCCGCCGCCGCCGTC 60 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 GTCGAGGGCGAGGCAGCGGCGCTCCGCCTCGGCTCGGGCGGCGCACCGGCGCCTCTGAGC 120 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 GGCCACGCCCCGGTCTCCGCCATCCGCCCGTCCGCCTCTCCGTTCGACCTCGTCCCGTGG 180 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 TCCCTCCCTACGCCGCCGTCGACCGCCGTTTCTGGTAATCTCAGGAACTTGAAATGGCAG 240 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 ACGAGGAGCATGCTCCAACGTCTAGGAAGAGGGTTGCAGGTACCCAAATCAACAAGGATA 300 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 ATCCTGAGCCTGATGATGACTCAACTGAGCAAGAGATGGGGACATTTAAGAGAGCTAGTG 360 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 AGGAAGTGATGGCAACACGGAGAATTGTAAAGGTTCGACGCCAGCAGCCCTCATCAGCTC 420 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 CTTCTAATCCTTTCTCTGCAATCAGATTTACCCCCAGTGATACCAGCGCCCAAGCAACTA 480 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 TCCCTGTCTCAGAGCCTCAACCTTCTGATGTCATTACAGCGAATGCAAAGGATAGTTCAA 540 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 GTGAGAAAGCTGATGAGGGAAGCAATGGCAGTGGGAAAGATGCTTTACCTGTAACTGACA 600 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 AGAGTGCAGGTTCTAGTGAGGTAGCTGAGACAGAAAAGGATGGATCAGATCTGAAAGGAT 660 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 CAGATGAAAAAGCCAAGTCCAGTGACTCAATTGAACCACCTTCTCAACCTGTTGAGACCA 720 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 CTGACGAAACAAAAGACTTGGGGGGCGGATCAGTGGTAGCTGGAGAGGCCAAGGAAGATA 780 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 ACAGCAAGGCATCTGATATCGAGGACAAAACAGCAAAAGAGGGAGATGCTGAAGAAGAGG 840 consensus_15715#2 ------------------------------------------GGGAGTCTGAGAGAGA-- 16 consensus_15715#1 ---------------------------------CTTTACGAGGACATGTCGCTGAAGGAC 27 * * * ** consensus_15715#0 ATGGAGCAAATGAGGCTGGAGCTGAAGACAAAATTAGCAAGGGTGATGATGAGAAGAAAG 900 consensus_15715#2 -TGGA-CAAATGAG-CTGA--CTGAA--CCAAATTACCAAGGGTGATGATGAGAAGAAAG 69 consensus_15715#1 ATGGACAAGAAGGGCGTGACGTTTGC--CTGTATGAACAGCATCGGCGACTCGCAGAGCG 85 **** * * * * ** * * ** * ** * ** * *** * consensus_15715#0 ATGGAGATGAATCAGAGACAAAGGATGGATCGTCTGAGGAGCAGAAGGATGCTGATAACA 960 consensus_15715#2 ATGGAGATGAATCAGA-ACAAAGA--TGATCGTCTGAGGAGCAGAAGGATGCTGATAACA 126 consensus_15715#1 GGCTTGCCACATTTGCTCTGAAGTT-CAGGGATACCAGCATCAGGGAGGAGTTCAAAGCT 144 * ** * *** * ** * *** * * * * * * consensus_15715#0 AGGGGC-AGTCGT-CATCACCAACACCCCTTTT--CTCTTTCAAGA-ACCTGTCGAGTGG 1015 consensus_15715#2 AGGGCC-AGTCGT-CATCACCAACACCCCTTTT--CTCTTTCAAGA-ACCTGTCGAGTGC 181 consensus_15715#1 GCGGTGGAGATGCACAAGGCGAAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTCC 204 ** ** * ** * ** * * * * * ****** *** * * * consensus_15715#0 CCAAAATGCCTTCACAGGACTGG---CTGGAACTGGATTTTCAG-GCTCTTCATT---TT 1068 consensus_15715#2 C--AAATCCCTTCACAGGACTG----CTGGAACTGGATTTTCAG-GCT-TTCATT---TT 230 consensus_15715#1 CCGAAG--GCATCAGATGATTGAAGGTTGAAGCCCAACTCTCGCCACAATGCACCGAGTC 262 * ** * *** * ** ** ** * * * * ** * * ** * consensus_15715#0 CATTTGGATCAGGCTCTAAAGAAAGCT-CGAGTGCTCCCC--------TGTTTGGGCTAA 1119 consensus_15715#2 CATTTGGATCAGGCT-TAAAGAAAGCT-CGAGTGTTCC----------TGTTTGGGCTAA 278 consensus_15715#1 CATGAAGTGGAGGAGCTGAGATACGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAAC 322 *** * *** * * * *** * ** * * *** * * consensus_15715#0 AGACTGATGGCTCATCATTCCCATCTTTTAGTATTGGTGCTTCGAATAATGGGAGTTCCT 1179 consensus_15715#2 AGACTGA-GGCTCATCATTCCCATCCTT-AGTAT---GGCTTCGAATAATGGGA----TT 329 consensus_15715#1 ATACCGT-ACCATGTCACTACGCTGCCTTAAGATGGTGATGCGCTTGCATACGGTTTCCT 381 * ** * * *** * * * * * ** ** * * consensus_15715#0 CCC-CTGCGCTTGCGACTTCGGCAGAAGCTCCCAAGAAATTTGCTATGCCAGAGGGCCC- 1237 consensus_15715#2 CTC-CTGCGCTTGCGATTTCGCCAGAAGTTCCCAAGAA--TTGTTA--CCAGAGGCCCC- 383 consensus_15715#1 GTCGCTGTTTTTGGAACAGTGGGTAGAGTCCTGTGAAA---CTTTAAATTAAAAGTCCTG 438 * *** *** * * ** * ** ** * * * ** consensus_15715#0 -AGTTGAAACTGGTGAAGAGAATGAGAAGGCCATATTCACAGC----CGACTCAGCATTG 1292 consensus_15715#2 -AGT--GAACTG-TGAAGAGA-TGAGA--GCCATAT-CACACC----CGACCCTGTATGA 431 consensus_15715#1 AAATCTTAGTAAGTGGAGAGA-TGAGACTCCTAT-TGCCTACTGTGATGACCCCAGCGGA 496 * * * ** ***** ***** * ** * * * *** * consensus_15715#0 TATGAATACTTGGATGGGGGTTGGAAAGAAAGAGGAAAGGGGGAACTAAAGTTGAACATC 1352 consensus_15715#2 AACTGATGGGTGGAA--------------------------------------------- 446 consensus_15715#1 CACTCACTAAGAGTATGCCGCTGAGTGTTTGATATTCTATTTGGGGATGAGATCTTTATC 556 * * * consensus_15715#0 CCAGTATCTGGTGGCGAGAGGTCTCGTCTCGTCATGAGAACCAAGGGCAATTACAGGCTA 1412 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------ 604 consensus_15715#0 GTTCTTAACGCAAGCCTTTACGAGGACATGTCGCTGAAGGACATGGACAAGAAGGGCGTG 1472 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 ACGTTTGCCTGTATGAACAGCATCGGCGACTCGCAGAGCGGGCTTGCCACATTTGCTCTG 1532 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 AAGTTCAGGGATACCAGCATCAGGGAGGAGTTCAAAGCTGCGGTGGAGATGCACAAGGCG 1592 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 AAAAAGGCGTCCGGCACACTCAAGACACCCGAGAACTCCCCGAAGGCATCAGATGATTGA 1652 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 AGGTTGAAGCCCAACTCTCGCCACAATGCACCGAGTCCATGAAGTGGAGGAGCTGAGATA 1712 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 CGCTTCTTGTTCTTTTGGGGGGGTTTATTTAAGTAACATACCGTACCATGTCACTACGCT 1772 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 GCCTTAAGATGATGATGCGCTTGCATACGGTTTCCTGTCGCTGTTTTTGGAACAGTGGGT 1832 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 AGAGTCCTGTGAAACTTTAAATTAAAAGTCCTGAAATCTTAGTAAGTGGAGAGATGAGAC 1892 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 TCCTATTGCCTACTGTGATGACCCCAGCGGACACTCACTAAGAGTATGCCGCTGAGTGTT 1952 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 TGATATTCTATTTGGGGATGAGATCTTTATCAATCGGTGTTGTACTGGTGTATCATGTAT 2012 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 CCGTGATCTGCAGCGTCAGCGTCGCCTTACCTTTACCTTCTACTGTTGCTGATAATCTTT 2072 consensus_15715#2 ------------------------------------------------------------ consensus_15715#1 ------------------------------------------------------------ consensus_15715#0 TCTTTGAGAAACTTTTTGCTGATGATAATAAGAGTACCTTTTGTTGGAAAAA 2124 consensus_15715#2 ---------------------------------------------------- consensus_15715#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||