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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1826 fasta sequence
[CAACTGCAAAAACAAAAAAGAAAAAGAAAAATGGCGCCAAGATTAACCGCCAAACGGCCTGCTTCCCTCTCCTCTCGCGGCAGAAACGCAGTTCTTCAGCTATGGTGTGGATCAGAGAAATGGAGGATTCTGCAGAGCCATCGCCGCCTCCCCGGCGGCGTCCGGTGCAGCTCCGGCTCGCCGGACAGCGGCGGCGGCGGCGCCCCGCCGCTCGTCAGGGCGGCGGTCAGCGCCGTCACCGAGCTACTCAGGGTCCTGACTCCCAAGAACCCCAGAGTTGTTGATGATGATCTTCAGAAGGGAGATGAAGGAGGAGGAGGAGCAGAGTTGGATTCGCCGCGCAGCGTGGATGATGTGATTGCTGTTCTTGAAGCCGATTACCAGCGAGCATATTTCCTCACTGGGAACTTTACTCCGGACATATATACCGAAGATTGCTTGTTTGAGGACCCGACAATAAAGTTCCGAGGAAGGTCTAGATATTCCCAGAACCTAGATCTGCTTGTACCGTTCTTCGACAGCCCTTCACTTGAGCTTGAAAACATTGAAAAGGGGTTGAGGGTTGAAACAAAGTTCATCATGGCAACATGGACACTAAGGACATATTTAAGGCTTCCATGGAGACCCCTCATCGCCATCAGAGGGAATACAACATATGATTTGGATGAAGAATACAAGGTCACTAGACATGCTGAGAGCTGGGATGTCTCTGCATTGGAGGCGATTGGGCAGATATTCGTGCCGGCTCCGAAACAAACAGATGACATCTAATTAACCAGCTAAAGCAACACAGAGCACTAGTATACATGAATATGATGCTGGTGCTTTGCCACGTAGTGCTTCTCAACCGCAATGCATAACTGTACATTTCCTTTTTGTGATTACACACAAGTGGGCGAAAAAAAAAAAGACACCTCGCAAGAAAAAAGAAGCTACTAAAAGATACACCTAAGATGGGCCGGCCCATCGGCCCATCACCGTCGAATGTTCCACAAGCTTCGCGGCCCAACCCCAACCACCCAAAGCCAAGCAACCGTACGGTCTCCTCTCTCGTCAAACCAAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC-GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA-AG-CATTGGGAGCACTCCCCC-TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCCCAAAAAAAAAAAAAAGTATTTTCCTGTTTTACTAAAAAAAA]
[+] EMBL AK072032 [CAACTGCAAAAACAAAAAAGAAAAAGAAAAATGGCGCCAAGATTAACCGCCAAACGGCCTGCTTCCCTCTCCTCTCGCGGCAGAAACGCAGTTCTTCAGCTATGGTGTGGATCAGAGAAATGGAGGATTCTGCAGAGCCATCGCCGCCTCCCCGGCGGCGTCCGGTGCAGCTCCGGCTCGCCGGACAGCGGCGGCGGCGGCGCCCCGCCGCTCGTCAGGGCGGCGGTCAGCGCCGTCACCGAGCTACTCAGGGTCCTGACTCCCAAGAACCCCAGAGTTGTTGATGATGATCTTCAGAAGGGAGATGAAGGAGGAGGAGGAGCAGAGTTGGATTCGCCGCGCAGCGTGGATGATGTGATTGCTGTTCTTGAAGCCGATTACCAGCGAGCATATTTCCTCACTGGGAACTTTACTCCGGACATATATACCGAAGATTGCTTGTTTGAGGACCCGACAATAAAGTTCCGAGGAAGGTCTAGATATTCCCAGAACCTAGATCTGCTTGTACCGTTCTTCGACAGCCCTTCACTTGAGCTTGAAAACATTGAAAAGGGGTTGAGGGTTGAAACAAAGTTCATCATGGCAACATGGACACTAAGGACATATTTAAGGCTTCCATGGAGACCCCTCATCGCCATCAGAGGGAATACAACATATGATTTGGATGAAGAATACAAGGTCACTAGACATGCTGAGAGCTGGGATGTCTCTGCATTGGAGGCGATTGGGCAGATATTCGTGCCGGCTCCGAAACAAACAGATGACATCTAATTAACCAGCTAAAGCAACACAGAGCACTAGTATACATGAATATGATGCTGGTGCTTTGCCACGTAGTGCTTCTCAACCGCAATGCATAACTGTACATTTCCTTTTTGTGATTACACACAAGTGGGCGAAAAAAAAAAAGACACCTCGCAAGAAAAAAGAAGCTACTAAAAGATACACCTAAGATGGGCCGGCCCATCGGCCCATCACCGTCGAATGTTCCACAAGCTTCGCGGCCCAACCCCAACCACCCAAAGCCAAGCAACCGTACGGTCTCCTCTCTCGTCAAACCAAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCG ]
[+] EMBL CK085304 [ TTTAAGGCTTCCATGGAGACCCCTCATCGCCATCAGAGGGAATACAACATATGATTTGGATGAAGAATACAAGGTCACTAGACATGCTGAGAGCTGGGATGTCTCTGCATTGGAGGCGATTGGGCAGATATTCGTGCCGGCTCCGAAACAAACAGATGACATCTAATTAACCAGCTAAAGCAACACAGAGCACTAGTATACATGAATATGATGCTGGTGCTTTGCCACGTAGTGCTTCTCAACCGCAATGCATAACTGTACATTTCCTTTTTGTGATTACACACAAGTGGGCG AAAAAAAAAAGACACCTCGCAAGAAAAAAGAAGCTACTAAAAGATACACCTAAGATGGGCCGGCCCATCGGCCCATCACCGTCGAATGTTCCACAAGCTTCGCGGCCCAACCCCAACCACCCAAAGCCAAGCAACCGTACGGTCTCCTCTCTCGTCAAACCAAACCCAAGCAAAGCACCCGC ]
[+] EMBL AK103963 [ CCAAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGC ]
[+] EMBL CF292168 [ AAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCG TCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTNTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTAT ]
[+] EMBL CA763275 [ CACATCGGAGAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAAaaaaaaaaa ]
[+] EMBL AK121368 [ GAAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTT ]
[+] EMBL CB685892 [ ggcacatGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATC ]
[+] EMBL C29181 [ AGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGNCGATGCCCAGGCGAAG AGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCG GANAGATTTTGGGAGCACTTCCCC TGTACCANAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTTTAATTTTTTTGATGTATGAA ]
[+] EMBL AU223251 [ CGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAACAGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTC ]
[+] EMBL AU077553 [ GCTTCTGGAAGGNTCTNGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGNCTCCACATGAAC GCCGTCGCCTTCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTNGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTTCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTG ]
[+] EMBL AU162374 [ TCTGGAAGGTTCTCGAAGATGCTGTCCNCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC ACCGTCGCCTCCCGCCTCCGCAAATACNGGCTCCGGTACGACGACCTGTACGACNCCNACCACGACCTCGACATCAAGGAGGCCCNGGCGCGGCTGCCGCGGGAGGNGGTGGACGCCCGCAACCAGCGCNTCAAGCG ]
[+] EMBL AU161460 [ TGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGC ]
[+] EMBL CB664173 [ CGCGGCGGAACCCGCTGGCCCGCCTCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGAC ]
[+] EMBL AU223252 [ TCCACATGAAC GCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAAaaaa ]
[-] EMBL CF292167 [ ACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCG TCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCCTTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCTTAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCCCAAAAAAA ]
[-] EMBL CF335528 [ AAGCAGACACCGTTCAGAGGCTATTTATTTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTTTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCCCCGTCAGTTCTCCATAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCCCAAAAAAAAAAAAAA ]
[-] EMBL CF296589 [ CAGAGCGCGA AG CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCACAGACCCTCTGAGCCGTATTTTCCTGTTTTACTAAAAAAAA]
[+] EMBL AU031590 [ G CATTGGGAGCACTCCCCC TGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCNGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTNGGTAAGAAAGTTTTCATTGTCGNACAAAAAA ]
consensusID : consensus_15719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 693 fasta sequence
[AGGGTCGGACCCANGGGTCCGGCCCANGGGGTCCGCGAAAAATGCTTGTCNTCCCTGTCGGCGTGGCTGGTGAACCCCGGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCTTCCCGCTTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCG-GCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACC-TTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCAAAAAAA]
[+] EMBL AU161461 [AGGGTCGGACCCANGGGTCCGGCCCANGGGGTCCGCGAAAAATGCTTGTCNTCCCTGTCGGCGTGGCTGGTGAACCCCGGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCTTCCCGCTTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCG GCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACC TTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCAAAAAAA]
[+] EMBL AU077554 [ GAGGCCCTGGCGCGNGCTGCCGCGGNAGGTGGTGAACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACC TTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACTCTATATAGCTTCACTTGGAGCTGAGTAGGTAAAAAAaaaaa ]
[+] EMBL BI797838 [ CGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACT CCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGT TTATG GTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTTGGTATGACAACTGACATATGGTGTATGTTTGGTAACCAA TTAAAACTCTATATAGCTTCAaaaa ]
consensusID : consensus_15719#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 669 fasta sequence
[ACCTGACTGGACTGAAGGGAGTAGAAAAAAACCAAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGTGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGGGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGAC]
[+] EMBL CF296588 [ACCTGACTGGACTGAAGGGAGTAGAAAAAAACCAAACCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGTGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGGGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCTTGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCATAGATACCTTTTGGTATGAC]
[+] EMBL CF335527 [ CCCAAGCAAAGCACCCGCCACATCGGAGAAGAGAGAGAGAGAGAGAGAGAGCGTGGAAGCTTCTGGAAGGTTCTCGAAGATGCTGTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTAC ]
consensusID : consensus_15719#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence
[GCGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTTCCAAAAAAAAAAA]
[+] EMBL AU182192 [GCGGCGGAACCCGCTGGCCCGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGACCTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAGGTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAGTACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATGCTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTACCAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTATGAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTTCCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 CAACTGCAAAAACAAAAAAGAAAAAGAAAAATGGCGCCAAGATTAACCGCCAAACGGCCT 60
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 GCTTCCCTCTCCTCTCGCGGCAGAAACGCAGTTCTTCAGCTATGGTGTGGATCAGAGAAA 120
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 TGGAGGATTCTGCAGAGCCATCGCCGCCTCCCCGGCGGCGTCCGGTGCAGCTCCGGCTCG 180
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 CCGGACAGCGGCGGCGGCGGCGCCCCGCCGCTCGTCAGGGCGGCGGTCAGCGCCGTCACC 240
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 GAGCTACTCAGGGTCCTGACTCCCAAGAACCCCAGAGTTGTTGATGATGATCTTCAGAAG 300
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 GGAGATGAAGGAGGAGGAGGAGCAGAGTTGGATTCGCCGCGCAGCGTGGATGATGTGATT 360
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 GCTGTTCTTGAAGCCGATTACCAGCGAGCATATTTCCTCACTGGGAACTTTACTCCGGAC 420
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 ATATATACCGAAGATTGCTTGTTTGAGGACCCGACAATAAAGTTCCGAGGAAGGTCTAGA 480
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 TATTCCCAGAACCTAGATCTGCTTGTACCGTTCTTCGACAGCCCTTCACTTGAGCTTGAA 540
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 AACATTGAAAAGGGGTTGAGGGTTGAAACAAAGTTCATCATGGCAACATGGACACTAAGG 600
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 ACATATTTAAGGCTTCCATGGAGACCCCTCATCGCCATCAGAGGGAATACAACATATGAT 660
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 TTGGATGAAGAATACAAGGTCACTAGACATGCTGAGAGCTGGGATGTCTCTGCATTGGAG 720
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 GCGATTGGGCAGATATTCGTGCCGGCTCCGAAACAAACAGATGACATCTAATTAACCAGC 780
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 TAAAGCAACACAGAGCACTAGTATACATGAATATGATGCTGGTGCTTTGCCACGTAGTGC 840
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 TTCTCAACCGCAATGCATAACTGTACATTTCCTTTTTGTGATTACACACAAGTGGGCGAA 900
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 AAAAAAAAAGACACCTCGCAAGAAAAAAGAAGCTACTAAAAGATACACCTAAGATGGGCC 960
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 GGCCCATCGGCCCATCACCGTCGAATGTTCCACAAGCTTCGCGGCCCAACCCCAACCACC 1020
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 ------------------------------------------------------------
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 CAAAGCCAAGCAACCGTACGGTCTCCTCTCTCGTCAAACCAAACCCAAGCAAAGCACCCG 1080
consensus_15719#2 -------ACCTGACTGGACTGAAGGGAGTAGAAAAAAACCAAACCCAAGCAAAGCACCCG 53
consensus_15719#1 ------------------------AGGGTCGGACCCANGGGTCCGGCCCANGGGGTCCGC 36
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 CCACATCGGAGAAGAGAGAGAGAGAGAGAGAG--CGTGGAAGCT--TCTGGAAGGTTCTC 1136
consensus_15719#2 CCACATCGGAGAAGAGAGAGAGAGAGAGAGAGAGCGTGGAAGCT--TCTGGAAGGTTCTC 111
consensus_15719#1 GAAAAATGCTTGTCNTCCCTGTCGGCGTGGCTGGTGAACCCCGGGCGGAACCCGCTGGCC 96
consensus_15719#3 -----------------------------------------GCGGCGGAACCCGCTGGCC 19
consensus_15719#0 GAAGA-TGCT-GTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCC 1194
consensus_15719#2 GAAGA-TGCT-GTCCTCCCTGTCGGCGTGGCTGGTGAACCCGCGGCGGAACCCGCTGGCC 169
*****************
consensus_15719#1 CGCCTCCACATGAACGCCGTCGCTTCCCGCTTCCGCAAATACGGGCTCCGGTACGACGAC 156
consensus_15719#3 CGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGAC 79
consensus_15719#0 CGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGAC 1254
consensus_15719#2 CGCCTCCACATGAACGCCGTCGCCTCCCGCCTCCGCAAATACGGGCTCCGGTACGACGAC 229
*********************** ****** *****************************
consensus_15719#1 CTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAG 216
consensus_15719#3 CTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAG 139
consensus_15719#0 CTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAG 1314
consensus_15719#2 CTGTACGACCCCTACCACGACCTCGACATCAAGGAGGCCCTGGCGCGGCTGCCGCGGGAG 289
************************************************************
consensus_15719#1 GTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAG 276
consensus_15719#3 GTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAG 199
consensus_15719#0 GTGGTGGACGCCCGCAACCAGCGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAG 1374
consensus_15719#2 GTGGTGGACGCCCGCAACCAGTGCCTCAAGCGCGCCATGGACCTCTCCATGAAGCACCAG 349
********************* **************************************
consensus_15719#1 TACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATG 336
consensus_15719#3 TACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATG 259
consensus_15719#0 TACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATG 1434
consensus_15719#2 TACCTCCCCGCCGATGCCCAGGCGAAGCAGACACCGTTCAGAGGCTATTTATCTGATATG 409
************************************************************
consensus_15719#1 CTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTAC 396
consensus_15719#3 CTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTAC 319
consensus_15719#0 CTAGCACTGGTGAAAAAGGAGAGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTAC 1494
consensus_15719#2 CTAGCACTGGTGAAAAAGGAGGGCGCAGAGCGCGAAGCATTGGGAGCACTCCCCCTGTAC 469
********************* **************************************
consensus_15719#1 CAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTAT 456
consensus_15719#3 CAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTAT 379
consensus_15719#0 CAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTAT 1554
consensus_15719#2 CAGAGGACCATCCCATGAAGCGTCTACTTCGTAGGCCTGTTTCTAATTTTCTTGATGTAT 529
************************************************************
consensus_15719#1 GAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCT 516
consensus_15719#3 GAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTTCCAAAAAAAAAAA--------- 430
consensus_15719#0 GAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCT 1614
consensus_15719#2 GAAAGTGAATTCAATAAAACGCAGTGGACGATTATGTACCATGTATTATGCTAAAATCCT 589
************************************* *** * *
consensus_15719#1 TGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCA 576
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 TGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCA 1674
consensus_15719#2 TGTTGTGTAATGTGTTATGTGTATGCTTATTATGTGAAGATACCCACCGTCAGTTCTCCA 649
consensus_15719#1 TAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACT 636
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 TAGATACCTTTTGGTATGACAACTGACATATGGTGTATGTTTTGTAATCAATTTAAAACT 1734
consensus_15719#2 TAGATACCTTTTGGTATGAC---------------------------------------- 669
consensus_15719#1 CTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCAAAAAAA--- 693
consensus_15719#3 ------------------------------------------------------------
consensus_15719#0 CTATATAGCTTCACTTGGAGCTGAGTAGGTAAGAAAGTTTTCATTGTCGCCCAAAAAAAA 1794
consensus_15719#2 ------------------------------------------------------------
consensus_15719#1 --------------------------------
consensus_15719#3 --------------------------------
consensus_15719#0 AAAAAAGTATTTTCCTGTTTTACTAAAAAAAA 1826
consensus_15719#2 --------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||