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Oryza sativa
cluster # 15748 cluster # 15748       Sequences # 24       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15748#0 length = 1428 sequences # 23  
consensus_15748#1 length = 215 sequences # 1  

consensusID : consensus_15748#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 23
consensus length = 1428
fasta sequence
                              [TTCTAGAGGAAAAGGATCGATTTTTTTTCTTCCCCAATTTCTTCCTGGTGCTCACCTCCTCCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAGCAGG-TGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAA-TTTCAG-GAACTCGGAGAGGCATACC-AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTCCTCAGGATAACATGGTGGATCCTGCTGCTGTC-TTT-GGGATGC-TTTTTGGAAGTGACTATTTTGAAGATTATGTTGGACAGCTTGCACTGGCATCCATAGCATCAGTGGAAGTCGAGGAAAACTTAAACAGTCAAGAAGCAAGAGGGAAGGTTCAAGAGAAAATTAAAGAGTTACAAAAAGAAAGAGAACAGAAGCTTATTCAGAGCCTAAAAGATCGACTTCAACCATTTGTGGATGAGAGAAAGGATGAATTTGTTAACTGGGCAAATGGGGAAGCTCAGCGGTTATCCCATGCAGCTTTTGGCGAGGCTATGCTCACCACTATTGGCTATATTTATGTGCGACAAGCAGCGAGAGAACTTGGAAAGAGTAAGTTGTATATGGGTGTACCATT-CATAGCTGAGTGGGTCAGAGA-C-AAGGGCCACTGCATTAAA-TCACAGGTTAATGCCGC-TTCAGGCGC-TATCGCTCTGATGCAGCTAC-AAGAAGGGATG-AAAAAGATGGAGGAAAGTGACAAT-AAGGAGGACC-AGATTATGAAGAGTTTCGAGGAGAAAAAAGATGCCA-TGCTTAGTTACCTATGGAAAATTAAT-GTGGTTGATATTGAGTCAACACTTACACATGTTTGCCAAG-CAGTTTTGAAAGACGCCAGTGTCCCAAAAGATGTTCTGAAGTTACGAGCAAGAGCATTGAAAAAGCTTGGGACGATATT-CCAGGGTGCGAAGTCTCTGTACCATCGTGAAAACAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGCAACATCGAACTGAAGACTGCAAAAGTACAAAA--AGGA--AAAAAAAAAGTACACCTGACAGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCGTGTCCGTTTATTCA-TTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAACCTGCATATTACT-AGCTTGGGCTATCTCGTTGTAAGATTTGCAAAAAA]

[+] EMBL AK071113             [TTCTAGAGGAAAAGGATCGATTTTTTTTCTTCCCCAATTTCTTCCTGGTGCTCACCTCCTCCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAGCAGG TGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAA TTTCAG GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTCCTCAGGATAACATGGTGGATCCTGCTGCTGTC TTT GGGATGC TTTTTGGAAGTGACTATTTTGAAGATTATGTTGGACAGCTTGCACTGGCATCCATAGCATCAGTGGAAGTCGAGGAAAACTTAAACAGTCAAGAAGCAAGAGGGAAGGTTCAAGAGAAAATTAAAGAGTTACAAAAAGAAAGAGAACAGAAGCTTATTCAGAGCCTAAAAGATCGACTTCAACCATTTGTGGATGAGAGAAAGGATGAATTTGTTAACTGGGCAAATGGGGAAGCTCAGCGGTTATCCCATGCAGCTTTTGGCGAGGCTATGCTCACCACTATTGGCTATATTTATGTGCGACAAGCAGCGAGAGAACTTGGAAAGAGTAAGTTGTATATGGGTGTACCATT CATAGCTGAGTGGGTCAGAGA C AAGGGCCACTGCATTAAA TCACAGGTTAATGCCGC TTCAGGCGC TATCGCTCTGATGCAGCTAC AAGAAGGGATG AAAAAGATGGAGGAAAGTGACAAT AAGGAGGACC AGATTATGAAGAGTTTCGAGGAGAAAAAAGATGCCA TGCTTAGTTACCTATGGAAAATTAAT GTGGTTGATATTGAGTCAACACTTACACATGTTTGCCAAG CAGTTTTGAAAGACGCCAGTGTCCCAAAAGATGTTCTGAAGTTACGAGCAAGAGCATTGAAAAAGCTTGGGACGATATT CCAGGGTGCGAAGTCTCTGTACCATCGTGAAAACAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGCAACATCGAACTGAAGACTGCAAAAGTACAAAA  AGGA  AAAAAAAAAGTACACCTGACAGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCGTGTCCGTTTATTCA TTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAACCTGCATATTACT AGCTTGGGCTATCTCGTTGTAA             ]
[+] EMBL CF314474             [  CTAGAGGAAAAGGATCGATTTTTTTTCTTCCCCAATTTCTTCCTGGTGCTCACCTCCTCCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAGCAGG TGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAA TTTCAG GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTCCTCAGGATAACATGGTGGATCCTGCTGCTGTC TTT GGGATGC TTTTTGGAAGTGACTATTTTGAAGATTATGTTGGACAGCTTGCACTGGCATCCATAGCATCAGTGGAAGTCGAGGAAAACTTAAACAGTCAAGAAGCAAGAGGGAAGGTTCAAGAGAAAATTAAAGAGTTACAAAAAGAAAGAGAACAGAAGCTTATTCAGAGCCTAAAAGATCGACTTCAACCATTTGTGGATGAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU065786             [             GGATCGATTTTTTTTCTTCCCCAATTTCTTCCTGGTGCTCACCTCCTCCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAG AGGTTGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAA TTTCAG GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTNCTCAGGATAACATGGTGGATCCTGCTGCTGTCTTTT GGGATGCTTTTTTGGAAGTTACTATTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSS10218A            [             GGATCGATTTTNTTNCTTCCCCAATTTCTTCCTGGTGCTCACCTCCTCCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCANCGTGGACGGCTCCCCNGCCGAGATCAAGAAGGCCTATTANCTCAAGGCGAAGAGGG TGCATNCGGACAAGAATCCTGGGAACCCCGATNCGGCGCAGAAATTTTCAGNGAACTNGGAGGGGCATACCAAAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB618172             [                   ATTTTTTTTCTTCCCCAATTTCTTCCTGGTGCTCACCTCCTCCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAGCAGG TGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAA TTTCAG GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTCCTCATGATAACATGGTGGATCCTGCTGCTGTC TTT GGGATGC TTTTTGGAAGTGACTATTTTGAAGATTATGTTGGACAACTTGCACTGGCATCCATAGCATCAGTGGAAGTCGAGGAAAACTTAAACGGTCAAGAAGCAAGAGGGAAGGTTCAAGATAAAATTAAAGAGTTACAAAAAGAAAGAGAACAGAAGCTTATTCAGAGCCTAAAAGATCGACTTCAACCATTTGTGGATGAGAGAAAGGATGAATTTGTTAACTGGGCAAATGGGGAAGCTCAGCGGTTATCCCATGCAGCTATTGGCGAGGCTATGCTCACCACTATTGGCTATATTTATGTGCGACAAGCAGCGAGAGAACTTGGAAAGAGTAAGTTGTATATGGGTGTACCATT CATAGCTGAGTGGGTCACA A C AACGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK103912             [                                            CTGGTGCTCACCTCCTCCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAGCAGG TGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAA TTTCAG GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTCCTCAGGATAACATGGTGGATCCTGCTGCTGTC TTT GGGATGC TTTTTGGAAGTGACTATTTTGAAGATTATGTTGGACAGCTTGCACTGGCATCCATAGCATCAGTGGAAGTCGAGGAAAACTTAAACAGTCAAGAAGCAAGAGGGAAGGTTCAAGAGAAAATTAAAGAGTTACAAAAAGAAAGAGAACAGAAGCTTATTCAGAGCCTAAAAGATCGACTTCAACCATTTGTGGATGAGAGAAAGGATGAATTTGTTAACTGGGCAAATGGGGAAGCTCAGCGGTTATCCCATGCAGCTTTTGGCGAGGCTATGCTCACCACTATTGGCTATATTTATGTGCGACAAGCAGCGAGAGAACTTGGAAAGAGTAAGTTGTATATGGGTGTACCATT CATAGCTGAGTGGGTCAGAGA C AAGGGCCACTGCATTAAA TCACAGGTTAATGCCGC TTCAGGCGC TATCGCTCTGATGCAGCTAC AAGAAGGGATG AAAAAGATGGAGGAAAGTGACAAT AAGGAGGACC AGATTATGAAGAGTTTCGAGGAGAAAAAAGATGCCA TGCTTAGTTACCTATGGAAAATTAAT GTGGTTGATATTGAGTCAACACTTACACATGTTTGCCAAG CAGTTTTGAAAGACGCCAGTGTCCCAAAAGATGTTCTGAAGTTACGAGCAAGAGCATTGAAAAAGCTTGGGACGATATT CCAGGGTGCGAAGTCTCTGTACCATCGTGAAAACAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGCAACATCGAACTGAAGACTGCAAAAGTACAAAA  AGGA  AAAAAAAAAGTACACCTGACAGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCGTGTCCGTTTATTCA TTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAACCTGCATATTACT AGCTTGGGCTATCTCGTTGTAA             ]
[+] EMBL CF323183             [                                                     ACCTCCTCCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAGCAGG TGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCATAAA TGTCAA GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTCCTCAGGATAACATGGTGGATCCTGCTGCTGTC TTT GGGATGC TTTTTGGAAGTGACTATTTTGAAGATTATGTTGGACAGCTTGCACTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C26296               [                                                          CTCCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAG AGGTTGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAA TTTCAG GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTCCTCAGGATAACATGGTGGATCCTGCTGCTGTC TTT GGGATGC TTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU064660             [                                                           TCCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAA NAGG TGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAA TTTCAG GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTCCTCAGGATAACATGGTGGATCCTGCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU063803             [                                                           TCCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAG AGG TGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAA TTTCAG GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGG TTCCTCAGGATAACATGGTGGATCCTGCTGCTGTC TTTGGGGATGCTTTTTTGGAAGTGACTATTTTGAAGATTATGTTTGACAACTTTCACTTGCATCCATAGCATCAGTGGAAGTCGAGGGAAACTTTAACAGTCAAGAAGCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB624225             [                                                             CTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGTCCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAGCAGG TGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAA TTTCAG GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTCCTCAGGATAACATGGTGGATCCTGCTGCTGTC TTT GGGATGC TTTTTGGAAGTGACTATTTTGAAGATTATGTTGGACAACTTGCACTGGCATCCATAGCATCAGTGGAAGTCGAGGAAAACTTAAACGGTCAAGAAGCAAGAGGGAAGGTTCAAGAGAAAATTAAAGAGTTACAAAAAGAAAGAGAACAGACGCTTATTCAGAGCCTAAAAGATCGACTTCAACCATTTGTGGATGAGAGAAAGGATGAATTTGTTAACTGGGCAAATGGGGAAGCTCAGCGGTTATCCCATGCAGCTTTTGGCGAGGCTATGCTCACCACTATTGTCTATATTTATGTGCGACAAGCAGCGAGAGAACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CB658803             [                                                               CCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAGCAGG TGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCATAAA TTTCAG GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTCCTCAGGATAACATGGTGGATCCTGCTGCTGTC TTT GGGATGC TTTTTGGAAGTGACTATTTTGAAGATTATGTTGGACAGCTTGCACTGGCATCCATAGCATCAGTGGAAGTCGAGGAAAACTTAAACAGTCAAGAAGCAAGAGGGAAGGTTCAAGAGAAAATTAAAGAGTTACAAAAAGAAAGAGAACAGAAGCTTATTCAGAGCCTAAAAGATCGACTTCAACCATTTGTGGATGAGAGAAAGGATGAATTTGTTAACTGGGCAAATGGGGAAGCTCAGCGGTTATCCCATGCAGCTTTTGGCGAGGCTATGCTCACCACTATTGGCTATATTTATGTGCGACAAGCAGCGAGAGAACTTGGAAAGAGTAAGTTGTATATGGGTGTACCATT CATAGCTGAGTGGGTCAGAGA C AAGGGCCACTGCATTAAA TCACAGGTTAATGCCGC TTCAGGCGC TATCGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB677317             [                                                                                          AACTGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGTGGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAGCAGG TGCATCCGGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAA TTTCAG GAACTCGGAGAGGCATACC AAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCTTCCTCAGGATAACATGGTGGATCCTGCTGCTGTC TTT GGGATGC TTTTTGGAAGTGACTATTTTGAAGATTATGTTGGACAGCTTGCACTGGCATCCATAGCATCAGTGGAAGTCGAGGAAAACTTAAACAGTCAAGAAGCAAGAGGGAAGGTTCAAGAGAAAATTAAAGAGTTACAAAAAGAAAGAGAACAGAAGCTTATTCAGAGCCTAAAAGATCGACTTCAACCATTTGTGGATGAGAGAAAGGATGAATTTGTTAACTGGGCAAATGGGGAAGCTCAGCGGTTATCCCATGCAGCTTTTGGCGAGGCTATGCTCACCACTATTGGCTATATTTATGTGCGACAAGCAGCGAGAGAACTTGGAAAGAGTAAGTTGTATATGGGTGTACCATT CATAGCTGAGTGGGTCAGAGA C AAGGGCCACTGCATTAAA TCACAGGTTAATGCCGC TTCAGGCGC TATCGCTCTGATGCAGCTAC AAGAAAGGATG AAAAAGATGGAGGAAAGTGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU101062             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTGTATATGGGTGTCCCATTCCTTAGCTGATTGGNTCAGAGACC AAGGGCCACTGCATTAAATTCACAGNTTAATGCCGC TTCAGGNCC TATCGCTCTGATGCAGCTAC AAGAAGGGATG AAAAAGATGGAGGAAAGTGACAAT AAGGAGGACC AGATTATGAAGAGTTTCGAGGAGAAAAAAGATGCCA TGCTTAGTTACCTATGGAAAATTAAT GTGGTTGATATTGAGTCAACACTTACACATGTTTGCCAAG CAGTTTTGAAAGACGCCAGTGTCCCAAAAGATGTTCTGAAGTTACGAGCAAGAGCATTGAAAAAGCTTGGGACGATATT CCAGGGTGCGAAGTCTCTGTACCATCGTGAAAACAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGCAACATCGAACTGAAGACTGCAAAAGTACAAAA  AGGA  AAAAAAAAAGTACACCTGACAGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCGTGTCCGTTTATTCA TTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAACCTGCATATTACT AGCTTGGGCTATCTCGTTGTAAGATTTGCAAAAA ]
[-] EMBL CB624226             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTATATGGGTGTACCATT CATAGCTGAGTGGGTCAGAGA C AAGGGCCCCTGCATTTAA TCACAGGTTTATGCCGC TTCAGGCGC TATCGCTCTGATGCAGCTAC AAGGAGGGATG AAAAAGATGGAGGAAAGTGCCAAT AAGGGGGGCC AGATTATGAAGAGTTTCGAGGAGAAAAAAGATGCCA TGCTTAGTTACCTATGGAAAATTAAT GTGGTTGATATTGAGTCAACACTTACACATGTTTGCCAAG CAGTTTTGAAAGACGCCAGTGTCCCAAAAGATGTTCTGAAGTTCCGAGCAAGAGCATTGAAAAAGCTTGGGACAATATT CCAGGGTGGGAAGTCTCTGTCCCATCAAGAAACCTGCCTCCGGGTGGttccc                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU095749             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        gnTCAGAGA C ANGGGCCACTGCCTTTAA TCACAGGTTAATNCCGCTTTCAGGC C TATCGCTCTGATGCAGCTAC AAGAAGGGTTGAAAAAAGATGGAGGAAAGTGACAAT AAGGAGGACC AGATTATGAAGAGTTTCGAGGAGAAAAAAGATGCCA TGCTTAGTTACCTATGGAAAATTAAT GTGGTTGATATTGAGTCAACACTTACACATGTTTGCCAAGCCNGTTTTGAAAGACGCCNGTGTCCCAAAAGATGTTCTGAAGTTACGAGCAAGAGCATTGAAAAAGCTTGGGACGATATTCCCNGGGTGCGAAGTCTCTGTACCATCGTGAAAACAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGCAACATCGAACTGAAGACTGCAAAAGTACAAAA  AGGA  AAAAAAAAAGTACACCTNACAGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCGTGTCCGTTTATTCA TTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAACCTGCATATTACT AGCTTGGGCTATCTCGTTGTAAaaa          ]
[+] EMBL AU108251             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         tTCAGAGA CAAAGGGCCACTGCATTAAA TCACAGGTTAATGCCGC TTCAGG GCNTATCGCTCTGATGCAGCTNCAAAGAAGGGATG AAAAAGATGGAGGAAAGTGACAAT AAGGAGGACC NGATTATGAAGAGTTTCGAGGAGAAAAAAGATGCCA TGCTTAGTTACCTATGGAAAATTAAT GTGGTTGATATTGAGTCAACACTTACACATGTTTGCCAAG CAGTTTTGAAAGACGCCAGTGTCCCAAAAGATGTTCTGAAGTTACGAGCAAGAGCATTGAAAAAGCTTGGGACGATATT CCAGGGTGCGAAGTCTCTGTACCATCGTGAAAACAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGCAACATCGAACTGAAGACTGCAAAAGTACAAAA  AGGA  AAAAAAAAAGTACACCTGACAGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCGTGTCCGTTTATTCA TTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAACCTGCATATTACT AGCTTGGGCTATCTCGTTGTAAGATTTGCAAAAAA]
[-] EMBL CA759342             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        agaggacGA C AAGGGCCACTGCATTAAA TCACAGGTTAATGCCGC TTCAGGCGC TATCGCTCTGATGCAGCTCC AAGAAGGGATG AAAAAGATGGAGGAAAGTGCCAAT AAGGAGGACC AGATTATGAAGAGTTTCGAGGAGAAAAAAGATGCCA TGCTTAGGTACCTATGGAAAATTAAT GTGGTTGATATTGAGTCAACACTTACACATGTTTGCCAAG CAGTTTTGAAAGACGCCAGTGTCCCAAAAGATGTTCTGAAGTTACGAGCAAGAGCATTGAAAAAGCTTGGGACGATATT CCAGGGTGCGAAGTCTCTGTACCATCGTGAAAACAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGCAACATCGAACTGAAGACTGCAAAAGTACAAAA  GGGAAGAAAAAAAAAGTACACCTGACGGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCTTGTCCGTTTATTCA TTTTTGTGAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGT AAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAACCTGCATATTACT AGCTTGGGCTATCTCGTTGTAAaaaaa        ]
[+] EMBL BM419217             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGTGACAATNAAGGAGGACCAAGATTATGAAGAGTTTCGAGGAGAAAAAAGATGCCACTGCTTAGTTACCTATGGAAAATTAATCGTGGTTGATATTGAGTCAACACTTACACATGTTTGCCAAG CAGTTTTGAAAGACGCCAGTGTCCCAAAAGATGTTCTGAAGTTACGAGCAAGAGCATTGAAAAAGCTTGGGACGATATT CCAGGGTGCGAAGTCTCTGTACCATCGTGAAAACAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGCAACATCGAACTGAAGACTGCAAAAGTACAAAAGGAAGA  AAAAAAAAAGTACACCTGACAGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCTTGTCCGTTTATTCACCTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAACCNGCATATTACTCNCCTTGGGCTATCTCGTTGTAAGATTaaa      ]
[-] EMBL CF309931             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGCAACATCGAACTGAAGACTGCAAAAGTACAAAA  AGGA  AAAAAAAAAGTACACCTGACAGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCGTGTCCGTTTATTCA TTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAACCTGCATATTACT AGCTTGGGCTAaaaaa                   ]
[+] EMBL CF309932             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGCAACATCGAACTGAAGACTGCAAAAGTACAAAA  AGGA  AAAAAAAAAGTACACCTGACAGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCGTGTCCGTTTATTCA TTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAACCTGCATATTACT AGCTTGGGCTAaaaa                    ]
[+] EMBL AU094877             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CAGCCNACGGCAGGGAGCAGCAACATCGAACTGAAGACTGCAAAAGTACAAAA  AGGA  AAAAAAAAAGTACACCTGACAGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCGTGNCCGTTTATTCA TTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAACCTGCATATTACT AGCTTGGGCTATCTCGTTGTAAGATTTGCAA    ]
[+] EMBL BI810052             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GACAGACGCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCTTGTCCGTTTATTCA TTTTTGTAAGATTTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTTTGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACCCGAAGATTTTGTTGGTGCTCTGCAACCTGCATATTACT AGCTTGGGCTATCTCGTTGTAAaaaaaaaa     ]


>consensus_15748#0 TTCTAGAGGAAAAGGATCGATTTTTTTTCTTCCCCAATTTCTTCCTGGTGCTCACCTCCT CCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGG AGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGT GGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAGCAGGTGCATCC GGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAATTTCAGGAACTCGGAGAGGCATA CCAAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCT TCCTCAGGATAACATGGTGGATCCTGCTGCTGTCTTTGGGATGCTTTTTGGAAGTGACTA TTTTGAAGATTATGTTGGACAGCTTGCACTGGCATCCATAGCATCAGTGGAAGTCGAGGA AAACTTAAACAGTCAAGAAGCAAGAGGGAAGGTTCAAGAGAAAATTAAAGAGTTACAAAA AGAAAGAGAACAGAAGCTTATTCAGAGCCTAAAAGATCGACTTCAACCATTTGTGGATGA GAGAAAGGATGAATTTGTTAACTGGGCAAATGGGGAAGCTCAGCGGTTATCCCATGCAGC TTTTGGCGAGGCTATGCTCACCACTATTGGCTATATTTATGTGCGACAAGCAGCGAGAGA ACTTGGAAAGAGTAAGTTGTATATGGGTGTACCATTCATAGCTGAGTGGGTCAGAGACAA GGGCCACTGCATTAAATCACAGGTTAATGCCGCTTCAGGCGCTATCGCTCTGATGCAGCT ACAAGAAGGGATGAAAAAGATGGAGGAAAGTGACAATAAGGAGGACCAGATTATGAAGAG TTTCGAGGAGAAAAAAGATGCCATGCTTAGTTACCTATGGAAAATTAATGTGGTTGATAT TGAGTCAACACTTACACATGTTTGCCAAGCAGTTTTGAAAGACGCCAGTGTCCCAAAAGA TGTTCTGAAGTTACGAGCAAGAGCATTGAAAAAGCTTGGGACGATATTCCAGGGTGCGAA GTCTCTGTACCATCGTGAAAACAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGC AACATCGAACTGAAGACTGCAAAAGTACAAAAAGGAAAAAAAAAAGTACACCTGACAGAC GCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCGTGTCCGTTTATTCATTTTTGTAAGAT TTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTT TGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAA CCTGCATATTACTAGCTTGGGCTATCTCGTTGTAAGATTTGCAAAAAA



consensusID : consensus_15748#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence
                              [GGTTCGATTTTTTTTNNNCCCCAATTTNNTCCNGGCGCTCACCNCCNCCNCCCCCGGGATCTNCCAGAAGCTNCCAGAACNGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCNGCCATGGTGAAGGATACCGCGTACNACGACACCCNGGGGGTCAGCGTGGACGCCTCCCCNGNCGAGATCAAGAAGGCCTATNACCACAAGGCGAA]

[+] EMBL OSS10693A            [GGTTCGATTTTTTTTNNNCCCCAATTTNNTCCNGGCGCTCACCNCCNCCNCCCCCGGGATCTNCCAGAAGCTNCCAGAACNGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCNGCCATGGTGAAGGATACCGCGTACNACGACACCCNGGGGGTCAGCGTGGACGCCTCCCCNGNCGAGATCAAGAAGGCCTATNACCACAAGGCGAA]


>consensus_15748#1 GGTTCGATTTTTTTTNNNCCCCAATTTNNTCCNGGCGCTCACCNCCNCCNCCCCCGGGAT CTNCCAGAAGCTNCCAGAACNGACCTTGGTGCGGGCGAGATCCAAGGAGGAGGGTTTCCN GCCATGGTGAAGGATACCGCGTACNACGACACCCNGGGGGTCAGCGTGGACGCCTCCCCN GNCGAGATCAAGAAGGCCTATNACCACAAGGCGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15748#0      TTCTAGAGGAAAAGGATCGATTTTTTTTCTTCCCCAATTTCTTCCTGGTGCTCACCTCCT 60
consensus_15748#1      -------------GGTTCGATTTTTTTTNNNCCCCAATTTNNTCCNGGCGCTCACCNCCN 47
                                    ** ************   *********  *** ** ******* ** 

consensus_15748#0      CCTCCCCCGGGATCTTCCAGAAGCTTCCAGAACTGACCTTGGTGCGGGCGAGATCCAAGG 120
consensus_15748#1      CCNCCCCCGGGATCTNCCAGAAGCTNCCAGAACNGACCTTGGTGCGGGCGAGATCCAAGG 107
                       ** ************ ********* ******* **************************

consensus_15748#0      AGGAGGGTTTCCTGCCATGGTGAAGGATACCGCGTACTACGACACCCTGGGGGTCAGCGT 180
consensus_15748#1      AGGAGGGTTTCCNGCCATGGTGAAGGATACCGCGTACNACGACACCCNGGGGGTCAGCGT 167
                       ************ ************************ ********* ************

consensus_15748#0      GGACGCCTCCCCCGCCGAGATCAAGAAGGCCTATTACCTCAAGGCGAAGCAGGTGCATCC 240
consensus_15748#1      GGACGCCTCCCCNGNCGAGATCAAGAAGGCCTATNACCACAAGGCGAA------------ 215
                       ************ * ******************* *** *********            

consensus_15748#0      GGACAAGAATCCTGGGAACCCCGATGCGGCGCAGAAATTTCAGGAACTCGGAGAGGCATA 300
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      CCAAGTTTTAAGCGATCCTTCAAAAAGGGAGGCTTATGATAAGCATGGAAAGGAGGGGCT 360
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      TCCTCAGGATAACATGGTGGATCCTGCTGCTGTCTTTGGGATGCTTTTTGGAAGTGACTA 420
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      TTTTGAAGATTATGTTGGACAGCTTGCACTGGCATCCATAGCATCAGTGGAAGTCGAGGA 480
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      AAACTTAAACAGTCAAGAAGCAAGAGGGAAGGTTCAAGAGAAAATTAAAGAGTTACAAAA 540
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      AGAAAGAGAACAGAAGCTTATTCAGAGCCTAAAAGATCGACTTCAACCATTTGTGGATGA 600
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      GAGAAAGGATGAATTTGTTAACTGGGCAAATGGGGAAGCTCAGCGGTTATCCCATGCAGC 660
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      TTTTGGCGAGGCTATGCTCACCACTATTGGCTATATTTATGTGCGACAAGCAGCGAGAGA 720
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      ACTTGGAAAGAGTAAGTTGTATATGGGTGTACCATTCATAGCTGAGTGGGTCAGAGACAA 780
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      GGGCCACTGCATTAAATCACAGGTTAATGCCGCTTCAGGCGCTATCGCTCTGATGCAGCT 840
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      ACAAGAAGGGATGAAAAAGATGGAGGAAAGTGACAATAAGGAGGACCAGATTATGAAGAG 900
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      TTTCGAGGAGAAAAAAGATGCCATGCTTAGTTACCTATGGAAAATTAATGTGGTTGATAT 960
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      TGAGTCAACACTTACACATGTTTGCCAAGCAGTTTTGAAAGACGCCAGTGTCCCAAAAGA 1020
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      TGTTCTGAAGTTACGAGCAAGAGCATTGAAAAAGCTTGGGACGATATTCCAGGGTGCGAA 1080
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      GTCTCTGTACCATCGTGAAAACAGCCTACAGGTGGAAACCAGCCCACGGCAGGGAGCAGC 1140
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      AACATCGAACTGAAGACTGCAAAAGTACAAAAAGGAAAAAAAAAAGTACACCTGACAGAC 1200
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      GCAATTTCTGGTTTTTTGGAGGTGTCGTCTCTCGTGTCCGTTTATTCATTTTTGTAAGAT 1260
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      TTTAGACGACGCGTATCGTTCTGGATAAAATTTGCTGTTTGATTTGGTCTCCGTTTTCTT 1320
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      TGTAAAAATGGTGATGCTGTCGTGAGCTCTGAACACGAAGATTTTGTTGGTGCTCTGCAA 1380
consensus_15748#1      ------------------------------------------------------------
                                                                                   

consensus_15748#0      CCTGCATATTACTAGCTTGGGCTATCTCGTTGTAAGATTTGCAAAAAA 1428
consensus_15748#1      ------------------------------------------------
                                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)