cluster # 1575

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Oryza sativa
cluster # 1575 cluster # 1575 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1575#0 length = 797 sequences # 1

consensus_1575#1 length = 381 sequences # 1

consensusID : consensus_1575#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 797
fasta sequence

                              [TCTTTTAAGGAAAAAGAGCACGAGAAAGGTTATTCCTGACCTTTTTCATGTCACATCCATACTTACAAATAGTCAAATATCAAGAGCCATCTCGTTGGTTCTTTACATACACTGAATGCTGTTATAGAAGAAGCATCATGTTAGAGAAGAGAACTTTGATATTCACAACTCTGCTTCTTATTCCACTAACGAGAGTTGTATTTTAAATGCGATTCACATGGGCACCCTAGAGATTAATTCATATTTATCTCATTCACACTTAGCACAAGCAAACTTACATGTTTTAGTTCACTAAGGATGAGGACAGAAGTCTATTTTTTTTTATCTACTGGAAAATGTGTCTGTTTTAATAGTAATATTGACATATATATGTGACAGAGGGTCGAGAGTTAGTACGGGTATTGCTTTCTGCTGGTGCTGATCCCACAGCACAAGATGACCCACACTGTCGAACTGCACTGCATACTGCAGCAATGATCAATGATGCAGAATTGGTTAAGGTAAAGGTTATCTACTTATTATTATTATTATTTTTCCTTTGCTTTTCTGTTCTTGTCTGATGGTTGGAATTTTACTTCATTTTTCTGCTGTTTCTGCTTTAATTCTATATGAAAATATGCTTTATTCCCTTTGTTATATTTTCTTTGACAGATTATTTTGGAAGCTGGAGTTGATGTAAATATAAGAAATGCTCAGAACACAACACCACTTCTCGTTGCACTGAACAGAGGTGCAAACTCCTGTGTTGGTTTGCTTTTAGCTGCTGGAGCAAACTGCAATCTACAGGTACTGTGGCT]

[+] EMBL CB674901             [TCTTTTAAGGAAAAAGAGCACGAGAAAGGTTATTCCTGACCTTTTTCATGTCACATCCATACTTACAAATAGTCAAATATCAAGAGCCATCTCGTTGGTTCTTTACATACACTGAATGCTGTTATAGAAGAAGCATCATGTTAGAGAAGAGAACTTTGATATTCACAACTCTGCTTCTTATTCCACTAACGAGAGTTGTATTTTAAATGCGATTCACATGGGCACCCTAGAGATTAATTCATATTTATCTCATTCACACTTAGCACAAGCAAACTTACATGTTTTAGTTCACTAAGGATGAGGACAGAAGTCTATTTTTTTTTATCTACTGGAAAATGTGTCTGTTTTAATAGTAATATTGACATATATATGTGACAGAGGGTCGAGAGTTAGTACGGGTATTGCTTTCTGCTGGTGCTGATCCCACAGCACAAGATGACCCACACTGTCGAACTGCACTGCATACTGCAGCAATGATCAATGATGCAGAATTGGTTAAGGTAAAGGTTATCTACTTATTATTATTATTATTTTTCCTTTGCTTTTCTGTTCTTGTCTGATGGTTGGAATTTTACTTCATTTTTCTGCTGTTTCTGCTTTAATTCTATATGAAAATATGCTTTATTCCCTTTGTTATATTTTCTTTGACAGATTATTTTGGAAGCTGGAGTTGATGTAAATATAAGAAATGCTCAGAACACAACACCACTTCTCGTTGCACTGAACAGAGGTGCAAACTCCTGTGTTGGTTTGCTTTTAGCTGCTGGAGCAAACTGCAATCTACAGGTACTGTGGCT]




>consensus_1575#0
TCTTTTAAGGAAAAAGAGCACGAGAAAGGTTATTCCTGACCTTTTTCATGTCACATCCAT
ACTTACAAATAGTCAAATATCAAGAGCCATCTCGTTGGTTCTTTACATACACTGAATGCT
GTTATAGAAGAAGCATCATGTTAGAGAAGAGAACTTTGATATTCACAACTCTGCTTCTTA
TTCCACTAACGAGAGTTGTATTTTAAATGCGATTCACATGGGCACCCTAGAGATTAATTC
ATATTTATCTCATTCACACTTAGCACAAGCAAACTTACATGTTTTAGTTCACTAAGGATG
AGGACAGAAGTCTATTTTTTTTTATCTACTGGAAAATGTGTCTGTTTTAATAGTAATATT
GACATATATATGTGACAGAGGGTCGAGAGTTAGTACGGGTATTGCTTTCTGCTGGTGCTG
ATCCCACAGCACAAGATGACCCACACTGTCGAACTGCACTGCATACTGCAGCAATGATCA
ATGATGCAGAATTGGTTAAGGTAAAGGTTATCTACTTATTATTATTATTATTTTTCCTTT
GCTTTTCTGTTCTTGTCTGATGGTTGGAATTTTACTTCATTTTTCTGCTGTTTCTGCTTT
AATTCTATATGAAAATATGCTTTATTCCCTTTGTTATATTTTCTTTGACAGATTATTTTG
GAAGCTGGAGTTGATGTAAATATAAGAAATGCTCAGAACACAACACCACTTCTCGTTGCA
CTGAACAGAGGTGCAAACTCCTGTGTTGGTTTGCTTTTAGCTGCTGGAGCAAACTGCAAT
CTACAGGTACTGTGGCT

consensusID : consensus_1575#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence

                              [GAGTGCATGCGGGAATTGCTCATGGCTGGAGCTGATCCTAATGCAATAGACGGAGAAGGCGAATCTATCCTGCATATTGCTGTGGCCAAGAGATATACTGATTGTGCTATCGTCTTATTGGAAAATGGTGGTTGCAGGTCTATGGGCATACCAAATTCTGTGNATAAAACGCCATTGCATTTATGTATTAAAACATGGAATGCGGATGTGGTGAAAAGATGGGTTGAAGTTGCATCTGAAGAGGAGATAGCTGAAGCAATTGATGTACCTAGCCCTGTTGGGACTGCTTTGTGCATGGCAGCTGNTCTTAAAAAAGNGCACGAGAAAGAGGGTCGAGAGTTAGTACGGGTANTGCTTTCTGCTGGTGCTGATCCCACAGCA]

[+] EMBL AU068050             [GAGTGCATGCGGGAATTGCTCATGGCTGGAGCTGATCCTAATGCAATAGACGGAGAAGGCGAATCTATCCTGCATATTGCTGTGGCCAAGAGATATACTGATTGTGCTATCGTCTTATTGGAAAATGGTGGTTGCAGGTCTATGGGCATACCAAATTCTGTGNATAAAACGCCATTGCATTTATGTATTAAAACATGGAATGCGGATGTGGTGAAAAGATGGGTTGAAGTTGCATCTGAAGAGGAGATAGCTGAAGCAATTGATGTACCTAGCCCTGTTGGGACTGCTTTGTGCATGGCAGCTGNTCTTAAAAAAGNGCACGAGAAAGAGGGTCGAGAGTTAGTACGGGTANTGCTTTCTGCTGGTGCTGATCCCACAGCA]




>consensus_1575#1
GAGTGCATGCGGGAATTGCTCATGGCTGGAGCTGATCCTAATGCAATAGACGGAGAAGGC
GAATCTATCCTGCATATTGCTGTGGCCAAGAGATATACTGATTGTGCTATCGTCTTATTG
GAAAATGGTGGTTGCAGGTCTATGGGCATACCAAATTCTGTGNATAAAACGCCATTGCAT
TTATGTATTAAAACATGGAATGCGGATGTGGTGAAAAGATGGGTTGAAGTTGCATCTGAA
GAGGAGATAGCTGAAGCAATTGATGTACCTAGCCCTGTTGGGACTGCTTTGTGCATGGCA
GCTGNTCTTAAAAAAGNGCACGAGAAAGAGGGTCGAGAGTTAGTACGGGTANTGCTTTCT
GCTGGTGCTGATCCCACAGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1575#0      TCTTTTAAGGAAAAAGAGCACGAGAAAGGTTATTCCTGACCTTT-TTCATGTCACATCCA 59
consensus_1575#1      -------------GAGTGCATGCGGGAA-TTGCTCATGGCTGGAGCTGATCCTAATGCAA 46
                                    ** *** * *  *  **  ** ** *      * **   *   * *

consensus_1575#0      TACTTACAAATAGTCAAATATCAAGAGCCATCTCGTTG-GTTCTTTACATACACTGAATG 118
consensus_1575#1      TAGACGGAGA-AGGCGAATCTATCCTGC-ATATTGCTGTGGCCAAGAGATATACTGATTG 104
                      **     * * ** * *** *     ** ** * * ** *  *   * *** ***** **

consensus_1575#0      CTGTTATAGAAGAAGCATCATGTTAGAGAAGAGAACTTTGATATTCACAACTCTGCTTCT 178
consensus_1575#1      -TGCTAT--------CGTCTTATTGGAAAA--------TGGTGGTTGCAGGTCT------ 141
                       ** ***        * ** * ** ** **        ** *  *  **  ***      

consensus_1575#0      TATTCCACTAACGAGAGTTGTATTTTAAATGCGATTCACATGGGCACCCTAGAGATTAAT 238
consensus_1575#1      -ATGGGCATACCAAATTCTGTGNATAAAACGCCATT-------GCATT-TATGTATTAAA 192
                       **     ** * *    ***   * *** ** ***       ***   **   ***** 

consensus_1575#0      TCATATTTATCTCATTCACACTTAGCACAAGCAAACTTACATGTTTTAGTTCACTAAG-G 297
consensus_1575#1      ACATGGA------ATGCGGATGTGGTGAAAAGATGGGTTGAAGTTGCATCTGAAGAGGAG 246
                       ***         ** *  *  * *   **  *    *  * ***  *  * *  * * *

consensus_1575#0      ATGAGGACAGAAGTCTATTTTTTTTTATCTACTGGAAAATGTGTCTGTTTTAATAGTAAT 357
consensus_1575#1      ATAGCTGAAGCAATTGATGTACCTAGCCCTGTTGGGACTGCTTTGTGCATGGCAGCTGNT 306
                      **      ** * *  ** *   *    **  *** *    * * **  *      *  *

consensus_1575#0      ATTGACATA-TATATGTGACAGAGGGTCGAGAGTTAGTACGGGTATTGCTTTCTGCTGGT 416
consensus_1575#1      CTTAAAAAAGNGCACGAGAAAGAGGGTCGAGAGTTAGTACGGGTANTGCTTTCTGCTGGT 366
                       ** * * *    * * ** ************************* **************

consensus_1575#0      GCTGATCCCACAGCACAAGATGACCCACACTGTCGAACTGCACTGCATACTGCAGCAATG 476
consensus_1575#1      GCTGATCCCACAGCA--------------------------------------------- 381
                      ***************                                             

consensus_1575#0      ATCAATGATGCAGAATTGGTTAAGGTAAAGGTTATCTACTTATTATTATTATTATTTTTC 536
consensus_1575#1      ------------------------------------------------------------
                                                                                  

consensus_1575#0      CTTTGCTTTTCTGTTCTTGTCTGATGGTTGGAATTTTACTTCATTTTTCTGCTGTTTCTG 596
consensus_1575#1      ------------------------------------------------------------
                                                                                  

consensus_1575#0      CTTTAATTCTATATGAAAATATGCTTTATTCCCTTTGTTATATTTTCTTTGACAGATTAT 656
consensus_1575#1      ------------------------------------------------------------
                                                                                  

consensus_1575#0      TTTGGAAGCTGGAGTTGATGTAAATATAAGAAATGCTCAGAACACAACACCACTTCTCGT 716
consensus_1575#1      ------------------------------------------------------------
                                                                                  

consensus_1575#0      TGCACTGAACAGAGGTGCAAACTCCTGTGTTGGTTTGCTTTTAGCTGCTGGAGCAAACTG 776
consensus_1575#1      ------------------------------------------------------------
                                                                                  

consensus_1575#0      CAATCTACAGGTACTGTGGCT 797
consensus_1575#1      ---------------------