These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1575#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [TCTTTTAAGGAAAAAGAGCACGAGAAAGGTTATTCCTGACCTTTTTCATGTCACATCCATACTTACAAATAGTCAAATATCAAGAGCCATCTCGTTGGTTCTTTACATACACTGAATGCTGTTATAGAAGAAGCATCATGTTAGAGAAGAGAACTTTGATATTCACAACTCTGCTTCTTATTCCACTAACGAGAGTTGTATTTTAAATGCGATTCACATGGGCACCCTAGAGATTAATTCATATTTATCTCATTCACACTTAGCACAAGCAAACTTACATGTTTTAGTTCACTAAGGATGAGGACAGAAGTCTATTTTTTTTTATCTACTGGAAAATGTGTCTGTTTTAATAGTAATATTGACATATATATGTGACAGAGGGTCGAGAGTTAGTACGGGTATTGCTTTCTGCTGGTGCTGATCCCACAGCACAAGATGACCCACACTGTCGAACTGCACTGCATACTGCAGCAATGATCAATGATGCAGAATTGGTTAAGGTAAAGGTTATCTACTTATTATTATTATTATTTTTCCTTTGCTTTTCTGTTCTTGTCTGATGGTTGGAATTTTACTTCATTTTTCTGCTGTTTCTGCTTTAATTCTATATGAAAATATGCTTTATTCCCTTTGTTATATTTTCTTTGACAGATTATTTTGGAAGCTGGAGTTGATGTAAATATAAGAAATGCTCAGAACACAACACCACTTCTCGTTGCACTGAACAGAGGTGCAAACTCCTGTGTTGGTTTGCTTTTAGCTGCTGGAGCAAACTGCAATCTACAGGTACTGTGGCT] [+] EMBL CB674901 [TCTTTTAAGGAAAAAGAGCACGAGAAAGGTTATTCCTGACCTTTTTCATGTCACATCCATACTTACAAATAGTCAAATATCAAGAGCCATCTCGTTGGTTCTTTACATACACTGAATGCTGTTATAGAAGAAGCATCATGTTAGAGAAGAGAACTTTGATATTCACAACTCTGCTTCTTATTCCACTAACGAGAGTTGTATTTTAAATGCGATTCACATGGGCACCCTAGAGATTAATTCATATTTATCTCATTCACACTTAGCACAAGCAAACTTACATGTTTTAGTTCACTAAGGATGAGGACAGAAGTCTATTTTTTTTTATCTACTGGAAAATGTGTCTGTTTTAATAGTAATATTGACATATATATGTGACAGAGGGTCGAGAGTTAGTACGGGTATTGCTTTCTGCTGGTGCTGATCCCACAGCACAAGATGACCCACACTGTCGAACTGCACTGCATACTGCAGCAATGATCAATGATGCAGAATTGGTTAAGGTAAAGGTTATCTACTTATTATTATTATTATTTTTCCTTTGCTTTTCTGTTCTTGTCTGATGGTTGGAATTTTACTTCATTTTTCTGCTGTTTCTGCTTTAATTCTATATGAAAATATGCTTTATTCCCTTTGTTATATTTTCTTTGACAGATTATTTTGGAAGCTGGAGTTGATGTAAATATAAGAAATGCTCAGAACACAACACCACTTCTCGTTGCACTGAACAGAGGTGCAAACTCCTGTGTTGGTTTGCTTTTAGCTGCTGGAGCAAACTGCAATCTACAGGTACTGTGGCT] consensusID : consensus_1575#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [GAGTGCATGCGGGAATTGCTCATGGCTGGAGCTGATCCTAATGCAATAGACGGAGAAGGCGAATCTATCCTGCATATTGCTGTGGCCAAGAGATATACTGATTGTGCTATCGTCTTATTGGAAAATGGTGGTTGCAGGTCTATGGGCATACCAAATTCTGTGNATAAAACGCCATTGCATTTATGTATTAAAACATGGAATGCGGATGTGGTGAAAAGATGGGTTGAAGTTGCATCTGAAGAGGAGATAGCTGAAGCAATTGATGTACCTAGCCCTGTTGGGACTGCTTTGTGCATGGCAGCTGNTCTTAAAAAAGNGCACGAGAAAGAGGGTCGAGAGTTAGTACGGGTANTGCTTTCTGCTGGTGCTGATCCCACAGCA] [+] EMBL AU068050 [GAGTGCATGCGGGAATTGCTCATGGCTGGAGCTGATCCTAATGCAATAGACGGAGAAGGCGAATCTATCCTGCATATTGCTGTGGCCAAGAGATATACTGATTGTGCTATCGTCTTATTGGAAAATGGTGGTTGCAGGTCTATGGGCATACCAAATTCTGTGNATAAAACGCCATTGCATTTATGTATTAAAACATGGAATGCGGATGTGGTGAAAAGATGGGTTGAAGTTGCATCTGAAGAGGAGATAGCTGAAGCAATTGATGTACCTAGCCCTGTTGGGACTGCTTTGTGCATGGCAGCTGNTCTTAAAAAAGNGCACGAGAAAGAGGGTCGAGAGTTAGTACGGGTANTGCTTTCTGCTGGTGCTGATCCCACAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1575#0 TCTTTTAAGGAAAAAGAGCACGAGAAAGGTTATTCCTGACCTTT-TTCATGTCACATCCA 59 consensus_1575#1 -------------GAGTGCATGCGGGAA-TTGCTCATGGCTGGAGCTGATCCTAATGCAA 46 ** *** * * * ** ** ** * * ** * * * consensus_1575#0 TACTTACAAATAGTCAAATATCAAGAGCCATCTCGTTG-GTTCTTTACATACACTGAATG 118 consensus_1575#1 TAGACGGAGA-AGGCGAATCTATCCTGC-ATATTGCTGTGGCCAAGAGATATACTGATTG 104 ** * * ** * *** * ** ** * * ** * * * *** ***** ** consensus_1575#0 CTGTTATAGAAGAAGCATCATGTTAGAGAAGAGAACTTTGATATTCACAACTCTGCTTCT 178 consensus_1575#1 -TGCTAT--------CGTCTTATTGGAAAA--------TGGTGGTTGCAGGTCT------ 141 ** *** * ** * ** ** ** ** * * ** *** consensus_1575#0 TATTCCACTAACGAGAGTTGTATTTTAAATGCGATTCACATGGGCACCCTAGAGATTAAT 238 consensus_1575#1 -ATGGGCATACCAAATTCTGTGNATAAAACGCCATT-------GCATT-TATGTATTAAA 192 ** ** * * *** * *** ** *** *** ** ***** consensus_1575#0 TCATATTTATCTCATTCACACTTAGCACAAGCAAACTTACATGTTTTAGTTCACTAAG-G 297 consensus_1575#1 ACATGGA------ATGCGGATGTGGTGAAAAGATGGGTTGAAGTTGCATCTGAAGAGGAG 246 *** ** * * * * ** * * * *** * * * * * * consensus_1575#0 ATGAGGACAGAAGTCTATTTTTTTTTATCTACTGGAAAATGTGTCTGTTTTAATAGTAAT 357 consensus_1575#1 ATAGCTGAAGCAATTGATGTACCTAGCCCTGTTGGGACTGCTTTGTGCATGGCAGCTGNT 306 ** ** * * ** * * ** *** * * * ** * * * consensus_1575#0 ATTGACATA-TATATGTGACAGAGGGTCGAGAGTTAGTACGGGTATTGCTTTCTGCTGGT 416 consensus_1575#1 CTTAAAAAAGNGCACGAGAAAGAGGGTCGAGAGTTAGTACGGGTANTGCTTTCTGCTGGT 366 ** * * * * * ** ************************* ************** consensus_1575#0 GCTGATCCCACAGCACAAGATGACCCACACTGTCGAACTGCACTGCATACTGCAGCAATG 476 consensus_1575#1 GCTGATCCCACAGCA--------------------------------------------- 381 *************** consensus_1575#0 ATCAATGATGCAGAATTGGTTAAGGTAAAGGTTATCTACTTATTATTATTATTATTTTTC 536 consensus_1575#1 ------------------------------------------------------------ consensus_1575#0 CTTTGCTTTTCTGTTCTTGTCTGATGGTTGGAATTTTACTTCATTTTTCTGCTGTTTCTG 596 consensus_1575#1 ------------------------------------------------------------ consensus_1575#0 CTTTAATTCTATATGAAAATATGCTTTATTCCCTTTGTTATATTTTCTTTGACAGATTAT 656 consensus_1575#1 ------------------------------------------------------------ consensus_1575#0 TTTGGAAGCTGGAGTTGATGTAAATATAAGAAATGCTCAGAACACAACACCACTTCTCGT 716 consensus_1575#1 ------------------------------------------------------------ consensus_1575#0 TGCACTGAACAGAGGTGCAAACTCCTGTGTTGGTTTGCTTTTAGCTGCTGGAGCAAACTG 776 consensus_1575#1 ------------------------------------------------------------ consensus_1575#0 CAATCTACAGGTACTGTGGCT 797 consensus_1575#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||