These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1877 fasta sequence [TTTTTTTTTTTTTTTTTTGATGAACAAGATATAAAGTTGCAGACCCATTTTTTTCATTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC-GTATA-CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG-TTTGAGGCGCC-TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA-GGCACTTATTCCACAAA-ATT-TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC-CATGG-CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA-GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC-AAAGTTAGGCAACTT-GACATAGTATGTGACTCCACGTGTGGTTT-GGAATTTGTGCT-CATAA-GGGT-AAGAGC--GGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCATGCCGCCAGTCCTGAAATGAAACGTCCCAAACTGCCCAAACTGTCTGGTGGTGGCAGGCGCCATCCCGCCAAAGAAGAAGTTTCTGAATATCTCATCCGGATCAAATTCATCCTCATAAAACCCATTATACGCACGGGCAGTGGAGGCAGCCCTCCTGTTGTAAGTCACCGGCTCGTCCGAGCCAACAAGGTCATAGCGCTTGCGGCTCTCGGCATCGCTGAGGCACTGGAAGGCCTTGGAGACGGCCTTGAACGCATCCTCGGCACCGGGGGCCTTGTTCTTGTCGGGATGCACCTTGAGGGAGAGCTTGCGGTAGGCCTTGCGCACGTCCTCCACAGTGCAGTCCTTCTCGAGGCCGAGGATCTGGTAGTAGTCCCTGGTGTGCTTCTTGACCTGGCGCACAACCTCCAGCTGCTCAGACGTGTATGACCTCTCACCGGCGCTCTCGTCCTCCTCCTTCTTCTTACCCTTCTGCTTCCTCTCTCTCAGACCATCGCTCCCGGTTGCTTCCTCCGCGGATGCTGCCGCTGCTGACGACCGAGGTGGCGGCGGCGGCGGGGCCTGTGGGGACGACGACGAGGCGGAGGACGAGGGCGGGTCGTCCTGGTTGAGGAGAGGATCGAGCAGGTGGTCGATGGGGAGGGAGGGGTCGAGGCGCTTGGCCTTGGAGAGGAACTTGACGGCGCGGGCGCTGTCGCCGGCGTCCGCCGCGGCCTTCCCGATGCGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCC-CCCGCGCAGCCGCCGCAGATCTGGCCGCGCGACGGCGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGG-ATC-GCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGGGGGGGAGATGTGATGAGACGGCGACGCGACGACCACCGCGGGCGGAGTCGATATTTCCCN-CGACTCCGTCNCGCTTTGCTTCACTTTCCTCAATTTTCTCAGGATTCCTTTTTTTTTTTTTTAGTTTTCCCT] [-] EMBL AU091727 [TTTTTTTTTTTTTTTTTTGATGAACAAGATATAAAGTTGCAGACCCATTTTTTTCATTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC GTATA CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG TTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCA TGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGNTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC AAAGTTAGGCAACTTGGACATAGTATGTGAATCCACGTGTGGTTTGGGAATTTGTGCT CATAAGGGGTAAAGAACCGGGGACAGCGAGTAana ] [+] EMBL CB657305 [ TGAACAAGATATAAAGTTGCAGACCCATTTTTTTCATTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC GTATA CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG TTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC AAAGTTAGGCAACTT GACATAGTATGTGACTCCACGTGTGGTTT GGAATTTGTGCT CATAA GGGT AAGAGC GGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCATGCCGCCAGTCCTGAAATGAAACGTCCCA ] [-] EMBL BM421441 [ tttttTAAAG TGGAGACCCATTGTNGGNCGTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAGCGACATAGATATGCTTCGGTATAGCATACACATGATGGCATA TGATCAATCCCCTAGGGAACTTGATGAATTAGATATCCATNTAAGTNGCTACCG TTTGAGGCGCCGTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGGCACTTATTCCACAAANATTATACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACACATGGACCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGGGCGG GTCTCGTAGGAAAGGCCCCAGGGGGCGA GCTGCA CTCAANCCTAC ] [-] EMBL AU108636 [ ttttttTTGCAGACCCATTTTTTTCATTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC GTATA CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG TTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAAGTTAGGCAACTT GACATAGTATGTGACTCCAAGTGTGGTTT GGAATTTGTGCTCCATAA GGGT TAGAGCG GGGANAGCGANTAGACCGGT ] [+] EMBL CB657530 [ GACCCATTTTTTTCATTGTCAACTATGATGGCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC GTATA CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG TTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC AAAGTTAGGCAACTT GACATAGTATGTGACTCCACGTGTGGTTT GGAATTTGTGCT CATAA GGGT AAGAGC GGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCATGCCGCCAGTCCTGAAATGAAACGTCCCAAACTGCC ] [+] EMBL CB643695 [ CCCATTTTTTTCATTGTCCCCTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTC GTATA CATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCG TTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC AAAGTTAGGCAACTT GACATAGTATGTGACTCCACGTGTGGTTT GGAATTTGTGCT CATAA GGGT AAGAGC GGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCTATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCA ] [+] EMBL CB643693 [ GACATAGATATGGTTT CCATT CCTACTCCTGATAGATTGTAGATCGGTCCCCTATGGAACTTGATGAATTACATATCCATTTAAGAAGATACCGATTTGAGGCGCC TCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAA GGCACTTATTCCACAAA ATT TACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACAC CATGG CCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCA GTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTC AAAGTTAGGCAACTT GACATAGTATGTGACTCCACGTGTGGTTT GGAATTTGTGCT CATAA GGGT AAGAGC GGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCATGCCGCCAGTC ] [-] EMBL CB657529 [ TGCATGCCGCCAGTCCTGAAATGAAACGTCCCAAACTGCCCAAACTGTCTGGTGGTGGCAGGCGCCATCCCGCCAAAGAAGAAGTTTCTGAATATCTCATCCGGATCAAATTCATCCTCATAAAACCCATTATACGCACGGGCAGTGGAGGCAGCCCTCCTGTTGTAAGTCACCGGCTCGTCCGAGCCAACAAGGTCATAGCGCTTGCGGCTCTCGGCATCGCTGAGGCACTGGAAGGCCTTGGAGACGGCCTTGAACGCATCCTCGGCACCGGGGGCCTTGTTCTTGTCGGGATGCACCTTGAGGGAGAGCTTGCGGTAGGCCTTGCGCACGTCCTCCACAGTGCAGTCCTTCTCGAGGCCGAGGATCTGGTAGTAGTCCCTGGTGTGCTTCTTGACCTGGCGCACAACCTCCAGCTGCTCAGACGTGTATGACCTCTCACCGGCGCTCTCGTCCTCCTCCTTCTTCTTACCCTTCTGCTTCCTCTCTCTCAGACCATCGCTCCCGGTTGCTTCCTCCGCGGATGCTGCCGCTGCTGACGACCGAGGTGGCGGCGGCGGCGGGGCCTGTGGGGACGACGACGAGGCGGAGGACGAGGGCGGGTCGTCCTGGTTGAGGAGAGGATCGAGCAGGTGGTCGATGGGGAGGGAGGGGTCGAGGCGCTTGGCCTTGGAGAGGAACTTGACGGCGCGGGCGCTGTCGCCGGCGTCCGCCGCGGCCTTCCCGATGCGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCC CCCGCGC ] [-] EMBL CB657304 [ GAACGCATCCTCGGCACCGGGGGCCTTGTTCTTGTCGGGATGCACCTTGAGGGAGAGCTTGCGGTAGGCCTTGCGCACGTCCTCCACAGTGCAGTCCTTCTCGAGGCCGAGGATCTGGTAGTAGTCCCTGGTGTGCTTCTTGACCTGGCGCACAACCTCCAGCTGCTCAGACGTGTATGACCTCTCACCGGCGCTCTCGTCCTCCTCCTTCTTCTTACCCTTCTGCTTCCTCTCTCTCAGACCATCGCTCCCGGTTGCTTCCTCCGCGGATGCTGCCGCTGCTGACGACCGAGGTGGCGGCGGCGGCGGGGCCTGTGGGGACGACGACGAGGCGGAGGACGAGGGCGGGTCGTCCTGGTTGAGGAGAGGATCGAGCAGGTGGTCGATGGGGAGGGAGGGGTCGAGGCGCTTGGCCTTGGAGAGGAACTTGACGGCGCGGGCGCTGTCGCCGGCGTCCGCCGCGGCCTTCCCGATGCGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCC CCCGCGCAGCCGCCGCAGATCTGGCCGCGCGACGGCGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGG ATCGGCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGGGGGGG ] [-] EMBL CB643692 [ CTCTCAGACCATCGCTCCCGGTGGGTTCCTCTGCGGATGCTGCCGCTGCTGACGACCGAGGTGGCGCCGGCGGCGCGGCCTGTGGGGTCGACGAAGAGGCGGAGGACGAGGGCGGGTCGTCCTGGTTGAGGAGAGGATCGAGCAGGTGGTCGATGGGGAGGGAGGGGTCGAGGCGCTTGGCCTTGGAGAGGAACTTGACGGCGCGGGCGCCGTCGCCGGCGTCCGCCGCGGCCTTCCCGATGCGGAGGCACTTGACCGCGTCGTCCGTGTTGCCCTCCATGGCGCCTCCC CCCGCGCAGCCGCCGCAGATCTGGCCGCGCGACGGCGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGG ATCGGCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGG ] [-] EMBL C71818 [ tCGNCNGCGGGGCCTGTGGGGACGACGACGANNCGNAGGANGAGGGCGGGTCGTCCTGGTTGAGGAAAGGATCGAGCAGGTGGTCGATGGGGANGGAGGGGTCGAGGCGCTTGGCCTTGGANAGGAACTTGACGGGGCGGGCGCTGTTGCCGGCGTNCGCCGCGGCCTTCCCGATGNGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCC CCCGCGCAGCCGCCGn ] [-] EMBL C72274 [ acaaGGC GGTCGTCCTGGTTNA GAAAGGATCAAACAGTTGGTCCAT GGGAAGGAAGGGTC AAGCCCTTGGCCTTGGANAGGAACTTGACGGCNCGGGC CTGTCGCC GCGTCCGCCGCGGCCTTCCCGATNCGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCC CCCGCGCAGCCGCCGCAGATCTGGCCGCGCGACGGCGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGG ATC GCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAANAAGAGAGGAGGGGGGGGAGATGTGATGAGACGGCGACGCGACGACCACCGCGGGCGGAGTCGATATTTCCCN CGACTCCGTC ] [-] EMBL OSR2894A [ CTCNATGGCNCCTCCCACCCGNGCAGCCTCCGCAGATCTGGCCNCGCAACGACNAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGGAATC GCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGANCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGNCAAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGGGGGGGAGATGTGATGAGACGGCGACNCGACGACCACCGCGGGCGGANTCGATATTTCCCT ACACTCCNTCNCNCTTTGCTTCACTTTCCTCAATTT ] [-] EMBL CB643694 [ AGCCCCCGCAGATCTGTCCGCGGGACGGGGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGG ATCGGCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGG ] [-] EMBL C26665 [ GCGCGACGGCGAGTCACCCNCTCCTCCTCCTCCTCCGTGCGATGGACCCCGATCGGAATC GCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGNCGTCGGCGGCGG NGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGGGGGGGAGATGTGATGAGACGGCGACGCGACGACCACCGCGGGCGGAGTCGATATTTCCCN NGACTCCGTCNCGCTTTGCTTCACT ] [-] EMBL AU091726 [ GATGGACCCCGATCGG ATC GCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACCGGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAGGAGGGGGGGGAGATGTGATGAGACGGCGACGCGACGACCACCGCGGGCGGAGTCGATATTTCCCNACGACTCCGTCTCGCTTTGCTTCACTTTCCTCAATTTTCTCAGGATTCCTTTTTTTTTTTTTTAGTTTTCCCT] consensusID : consensus_15767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 747 fasta sequence [TTCCTTTTTTTTTTTTAAAGTTGCAGACCCATTTTTTTCATTGCCAATTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGC-AGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATT-C-TGTGAGAGTATTGA-GAAGTAATCCCGCTCAA-CATGCCGT-TCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATGTGACTCCACGTGTGGTTTGGAATTTGTGCTCATAAGGGTAAGAGCGGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCC] [+] EMBL CB656523 [ CCTTTTTTTTTTTTAAAGTTGCAGACCCATTTTTTTCATTGCCAATTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGC AGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATT C TGTGAGAGTATTGA GAAGTAATCCCGCTCAA CATGCCGT TCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATGTGACTCCACGTGTGGTTTGGAATTTGTGCTCATAAGGGTAAGAGCGGGACAGCGAGTAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGCTGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCC] [-] EMBL C98551 [ttttTTTTTTTTTTTTTTTTTTGCAGACCCATTTTTTTCATTGTCAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAAGTGCGGNGTCTCGTAGGAAAGCCCCCAGTGGNGACGCTGCACCTCAACCCTACAATT C TGTGAGAGTATTGA GAA ] [-] EMBL BI809693 [ ttttttTTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGA TGCATA TGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAA TTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGC AGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTG ACCTCAA CCTACAATT C TGTGAGAGTATTGA GAAGTAATCCCG TCAA CATGCCGT TCGAGTGTTGCACGCTCAG GCTCTGGTGTGGATACGG CCTC AAGTT ] [-] EMBL CB964834 [ ATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGC AGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATT C TGTGAGAGTATTGA GAAGTAATCCCGCTCAA CATGCCGT TCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATG NACTCCACGTGTGGTTTGGAATTTGTGCTCATAAGGGTAA ] [-] EMBL CB967194 [ CCTCAACCCTACAATTGCNTGTGAGAGTATTGANGAAGTAATCCCGCTCAANCATGCCGTNTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATGTGACTCCACGTGTGGTTTGGAATTTGTGCTCATAAG ] consensusID : consensus_15767#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence [NNNNNNTTTTTTTNNNNNNNNGCAGACCCATTTTNNNNATTGTCAACTATGATGTCTGNNAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATGTGACTCCACGTGTGTTTGGAATTTGTGCTCATAAGGGTNGAGCGCCGCAGCTATTCCCTTTAGTGAGGAAATTTAG] [-] EMBL CF196732 [NNNNNNTTTTTTTNNNNNNNNGCAGACCCATTTTNNNNATTGTCAACTATGATGTCTGNNAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGATATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATG ] [-] EMBL BU673703 [ ATTGCATATTGATCAATCCCCTATGGAACTTGATGAATTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCAAGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACTAATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCATGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAGTATGTGACTCCACGTGTGTTTGGAATTTGTGCTCATAAGGGTNGAGCGCCGCAGCTATTCCCTTTAGTGAGGAAATTTAG] consensusID : consensus_15767#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [TTTTTTAAATAAATAATGCGTGTATATTGCTACAGAAAAACTATGTGCACAGAAAGTTGAATCGCACCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGNN] [-] EMBL AU082713 [TTTTTTAAATAAATAATGCGTGTATATTGCTACAGAAAAACTATGTGCACAGAAAGTTGAATCGCACCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAATTTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACCTCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGTGTTGNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15767#0 TTTTTTTTTTTTTTTTTTGATGAACAAGATATAAAGTTGCAGACCCATTTTTTTCATTGT 60 consensus_15767#1 ---TTCCTTTTTTTTTTT-------------TAAAGTTGCAGACCCATTTTTTTCATTGC 44 consensus_15767#2 ----NNNNNNTTTTTTTN-------------NNNNNNNGCAGACCCATTTTNNNNATTGT 43 consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 CAACTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGA 120 consensus_15767#1 CAATTATGATGTCTGTTAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGA 104 consensus_15767#2 CAACTATGATGTCTGNNAAGTCAGGTATTCTCCGAAAACTTGAGATAAAAACGACATAGA 103 consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 TATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAA 180 consensus_15767#1 TATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAA 164 consensus_15767#2 TATGCTTCGTATACATACACATGATTGCATATTGATCAATCCCCTATGGAACTTGATGAA 163 consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 TTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCA 240 consensus_15767#1 TTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCA 224 consensus_15767#2 TTACATATCCATTTAAGTAGCTACCGTTTGAGGCGCCTCAACACTATCAGGAAAGTATCA 223 consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 AGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACT 300 consensus_15767#1 AGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACT 284 consensus_15767#2 AGGCAGAGTGTGTAGTCATCGAAGGCACTTATTCCACAAAATTTACCACGAGTCAAAACT 283 consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 AATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCA 360 consensus_15767#1 AATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCA 344 consensus_15767#2 AATTTGTCCCCTCCAATTTGAAGCCTATCAAAGGAGCAAGCGTTGGAAACCTTTACACCA 343 consensus_15767#3 -------TTTTTTAAATAAATAATGCGTGTATATTGCTA---CAGAAAAACTATGTGC-A 49 * *** * * * ** * * *** ** * * * consensus_15767#0 TGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAAT 420 consensus_15767#1 TGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAAT 404 consensus_15767#2 TGGCCAAAGTTCTTGTGTGCCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAAT 403 consensus_15767#3 CAG--AAAGTTGAATCGCACCTAGCTCCTCTGGACATATTACTGTGCTGTTGCCTCAAAT 107 * ****** * ***************************************** consensus_15767#0 TTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACC 480 consensus_15767#1 TTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACC 464 consensus_15767#2 TTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACC 463 consensus_15767#3 TTCCGGAGCATGTCGCAGTGCGGCGTCTCGTAGGAAAGCCCCCAGTGGCGACGCTGCACC 167 ************************************************************ consensus_15767#0 TCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGT 540 consensus_15767#1 TCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGT 524 consensus_15767#2 TCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGT 523 consensus_15767#3 TCAACCCTACAATTCTGTGAGAGTATTGAGAAGTAATCCCGCTCAACATGCCGTTCGAGT 227 ************************************************************ consensus_15767#0 GTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAG 600 consensus_15767#1 GTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAG 584 consensus_15767#2 GTTGCACGCTCAGTGCTCTGGTGTGGATACTGCTCCTCAAAGTTAGGCAACTTGACATAG 583 consensus_15767#3 GTTGNN------------------------------------------------------ 233 **** consensus_15767#0 TATGTGACTCCACGTGTGGTTTGGAATTTGTGCTCATAAGGGTAAGAGCGGGACAGCGAG 660 consensus_15767#1 TATGTGACTCCACGTGTGGTTTGGAATTTGTGCTCATAAGGGTAAGAGCGGGACAGCGAG 644 consensus_15767#2 TATGTGACTCCACGTGTG-TTTGGAATTTGTGCTCATAAGGGTN-GAGCGCCGCAGCTAT 641 consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 TAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGC 720 consensus_15767#1 TAGACCGGTTCAGAAGATGGCAGGAAGTTGAGCAACAGCAGCAATAGAACAGGCAACAGC 704 consensus_15767#2 TCCCTTTAGTGAGGAAATT-TAG------------------------------------- 663 consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 TGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCCCATGGCCATGGTGCATG 780 consensus_15767#1 TGAATAAGCATCCGGAGAGTGGAGCCACCGGAATTTTGCGCCC----------------- 747 consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 CCGCCAGTCCTGAAATGAAACGTCCCAAACTGCCCAAACTGTCTGGTGGTGGCAGGCGCC 840 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 ATCCCGCCAAAGAAGAAGTTTCTGAATATCTCATCCGGATCAAATTCATCCTCATAAAAC 900 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 CCATTATACGCACGGGCAGTGGAGGCAGCCCTCCTGTTGTAAGTCACCGGCTCGTCCGAG 960 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 CCAACAAGGTCATAGCGCTTGCGGCTCTCGGCATCGCTGAGGCACTGGAAGGCCTTGGAG 1020 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 ACGGCCTTGAACGCATCCTCGGCACCGGGGGCCTTGTTCTTGTCGGGATGCACCTTGAGG 1080 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 GAGAGCTTGCGGTAGGCCTTGCGCACGTCCTCCACAGTGCAGTCCTTCTCGAGGCCGAGG 1140 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 ATCTGGTAGTAGTCCCTGGTGTGCTTCTTGACCTGGCGCACAACCTCCAGCTGCTCAGAC 1200 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 GTGTATGACCTCTCACCGGCGCTCTCGTCCTCCTCCTTCTTCTTACCCTTCTGCTTCCTC 1260 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 TCTCTCAGACCATCGCTCCCGGTTGCTTCCTCCGCGGATGCTGCCGCTGCTGACGACCGA 1320 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 GGTGGCGGCGGCGGCGGGGCCTGTGGGGACGACGACGAGGCGGAGGACGAGGGCGGGTCG 1380 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 TCCTGGTTGAGGAGAGGATCGAGCAGGTGGTCGATGGGGAGGGAGGGGTCGAGGCGCTTG 1440 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 GCCTTGGAGAGGAACTTGACGGCGCGGGCGCTGTCGCCGGCGTCCGCCGCGGCCTTCCCG 1500 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 ATGCGGAGGCACTTGACCGCGTCGTCCTTGTTGCCCTCCATGGCGCCTCCCCCCGCGCAG 1560 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 CCGCCGCAGATCTGGCCGCGCGACGGCGAGTCACCCCCTCCTCCTCCTCCTCCGTGCGAT 1620 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 GGACCCCGATCGGATCGCTCCGCCCCCAAATCCAATCTCGCCGGAGTTGGAGCGGAGACC 1680 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 GGATCGGCGTCGGCGTCGGCGGCGGCGGCGAGTCGCCGTGGGAGGGGAGGAAGAAGAGAG 1740 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 GAGGGGGGGGAGATGTGATGAGACGGCGACGCGACGACCACCGCGGGCGGAGTCGATATT 1800 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 TCCCNCGACTCCGTCNCGCTTTGCTTCACTTTCCTCAATTTTCTCAGGATTCCTTTTTTT 1860 consensus_15767#1 ------------------------------------------------------------ consensus_15767#2 ------------------------------------------------------------ consensus_15767#3 ------------------------------------------------------------ consensus_15767#0 TTTTTTTAGTTTTCCCT 1877 consensus_15767#1 ----------------- consensus_15767#2 ----------------- consensus_15767#3 ----------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||