These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15772#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 662 fasta sequence [TGGACTGAAGGAGTAGAAAGAAAAACACAACACCATCAACCCCCGCATCCGCCACCGCC-GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC-GGGATGTCGGGGC-GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA-GC-GGTTGAA-TTTGAAAGAGAGCA-AGATGATCCATTGAAACT-ATCA-GGG-AAAACCAGACAGCTTGGTC-TTATT-GTCTGTAGGGGTACAGCGGTGAT-GCTT-GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC-TTCCAATCTGATGGTGCATAAACCTGC-AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC-GTGTCTCTTATGAACA-CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC-AGATATATGAATCGCATTATGCTCTTGTTC-GGTTTGTTCAAAAAAANNNNNNNNNNNNNNNNNNNNNAAA] [+] EMBL CF299026 [TGGACTGAAGGAGTAGAAAGAAAAACACAACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTG ] [+] EMBL AK121665 [ aaaagAGAAAAACACAACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCAC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTT ] [+] EMBL BI796065 [ gACAC ACACCTTCAACCCCCGCATCCGCCGCCTCCTGCCACCACCCCCT ACTCCGATTTGAAGCGACCAGA GCC CGGCTAA GTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGC AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACAGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTGTTC GGTTTGTTCAAAAA ] [+] EMBL OS0505A [ ACAACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTCTTTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAA ] [+] EMBL OSC03142 [ CAACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG ANAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTNATGGTTT GTATCGg ] [+] EMBL OSC1111 [ CAACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGNGNCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTNCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGGTCTCCTAGTCAAGATCCATGCT TTCCAGTAGAGAGGC ] [+] EMBL C97973 [ AACACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTGTTC GGTTTGTTCAAAAAAA ] [+] EMBL AU166175 [ ACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCATCTAAACTTGGTGCTTGATGAA GCGGGTTGAATTTTNAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATTNGTCTGTAGGGGTACAGCGGTGAT GCTTGGTATCGCCAACCGTTGGAACGGACGAGATTGCCAACCCCTTTCCAATCTGATGGTGCAT AACCTGC AGGAGCTGATGGGTNTCCTAGTCAAGATCCATGCTCTCCaatana ] [+] EMBL C73988 [ ACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGG ACGGACGAGATTGCCAA CCC TTCCAATCTGATGGTGCATAAACCTNCAAGGAGCTGATGGTTCTCCTGGT AAGATCCATG TTTTCCAGTAGAGn ] [+] EMBL AU164752 [ ACCATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCCTTTCCAATCTGATGGTGCAT AACCTGC AGGAGCTTATNGGTCTCCT ] [+] EMBL AU057788 [ ATCAACCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCT ] [+] EMBL CA754240 [ CCCCCGCATCCGCCACCGCC GCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCNACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTGTTCGGGGTTGTTCAAAAANNNNNNNNNNNNNNNNNNNNNNNAAA] [+] EMBL AU164753 [ CCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC NGATAaaaaaaaaa ] [-] EMBL BI306682 [ ctcgttccgCGCGGCTAAGGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACAGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTGTTC ] [+] EMBL BI797082 [ gcccgGCGGCTAAAGTCC GGGATGTCGGGGC GCAAGGAGACGGTGCTGGACCTGGCCAAGTTCCTCGACAAGGGCGTCCAGGTCAAGCTCACC GCGCCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACTGATCA GGGCAAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACAGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCTGTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGCATCCCATTATGCTCTTGTTC GGTTTGTTCAAAA ] [+] EMBL BI796333 [ GTCCGGGGATTTCGGGGCTCCAAGGAGAC GTGCT GACCTGCCCAA TTCGTCGACAAGGGCGTCCAGTTCAAGCTCACCGGC GCAGGCAAGTTACAGGGACTTTGAA GGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAACCC GGTTGAA TTTGAAAGAGAGCACAGATGATCCATTGAAACT ATCACGGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACAGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGT CCACAGTCTCTTATGACTC GTGTCTCTTATGAACACCCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTaaaaaaa ] [+] EMBL BI797588 [ AGACGGTGCTGGACCTGCCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACAGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTCAAGATATATGAATCGCATTATGCTCTTGTTC GGTTTGTTCAAAAAAA ] [+] EMBL AU058304 [ CAAGCTCACCGGCGGCAGGCAAGTTACAGGGCCTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCCTTTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGNATTAaaaaaa ] [+] EMBL AU174359 [ CAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTTGGTGCTTGATGAA GC GGTTGAA TTTGAAAGAGAGCA AGATGATCCATTGAAACT ATCA GGG AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCNGTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTNTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTaaaaaaaa ] [-] EMBL CF332224 [ G AAAACCAGACAGCTTGGTC TTATT GTCTGTAGGGGTACAGCGGTGAT GCTT GTATCGCCAACCGATTGAACGGACGAGATTGCCAACCCC TTCCAATCTGATGGTGCATAAACCTGC AGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTC GTGTCTCTTATGAACA CCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTC AGATATATGAATCGCATTATGCTCTTGTTC GGTTTGTTCATAAAAAa ] consensusID : consensus_15772#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [AGGTCTATGACCCAGCTTCTAAACTTGGTGCCTTGATGAACCGGTTGGAATTTGAAAGAGACCCAGATGGATCCACTGGAAACCTATCCAGGGAAAACCCAGACCACGCTTGGTCTTATGTGGTCTTTAAGGGGTACACGCGGTAGATGCTTGTATCCCCAAACCAGATGGGAACAAGACGAGTATGCCCAAACCCCTGGCCAAATCTGTATGGGTCGCAATAAACCTCGCAGGAGCTGATGGGTTCTCCTAGTCAAGATCCATGGCTTCTCCCAAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGGTGCGCCCACAGTCTCTTATGGACTCGTGTCTCTTATGGACCACCCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGACCTTGCTTTGTGTCAAGAATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAAAAA] [+] EMBL BI800290 [AGGTCTATGACCCAGCTTCTAAACTTGGTGCCTTGATGAACCGGTTGGAATTTGAAAGAGACCCAGATGGATCCACTGGAAACCTATCCAGGGAAAACCCAGACCACGCTTGGTCTTATGTGGTCTTTAAGGGGTACACGCGGTAGATGCTTGTATCCCCAAACCAGATGGGAACAAGACGAGTATGCCCAAACCCCTGGCCAAATCTGTATGGGTCGCAATAAACCTCGCAGGAGCTGATGGGTTCTCCTAGTCAAGATCCATGGCTTCTCCCAAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGGTGCGCCCACAGTCTCTTATGGACTCGTGTCTCTTATGGACCACCCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGACCTTGCTTTGTGTCAAGAATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAAAAA] consensusID : consensus_15772#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [CAACCCCCGCATCCGCCACCGCCGCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCCGGGATGTCGGGGCGCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGSGGCAGGCAAGTTACAGGGACTTTKGARGGGCTAWKRACCMRSCTCTWAACCTTGGKGCCTTAATGAAGCCGGTTGAATTTGAAAGAGAGCSAGATGATCCMTTGGAACTATCTVGGGGRAAACCMGACAGCSTTGGTCTTATTGSCTSTAGGGGBTACMACMSSHTGAADCSCTGTATCGCCCAMCCSATRGGACACGACGMGAGTTGYCCAMACCCTTCCAATMTGATA] [+] EMBL AA752673 [CAACCCCCGCATCCGCCACCGCCGCCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCCGGGATGTCGGGGCGCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAAGCTCACCGGSGGCAGGCAAGTTACAGGGACTTTKGARGGGCTAWKRACCMRSCTCTWAACCTTGGKGCCTTAATGAAGCCGGTTGAATTTGAAAGAGAGCSAGATGATCCMTTGGAACTATCTVGGGGRAAACCMGACAGCSTTGGTCTTATTGSCTSTAGGGGBTACMACMSSHTGAADCSCTGTATCGCCCAMCCSATRGGACACGACGMGAGTTGYCCAMACCCTTCCAATMTGATA] consensusID : consensus_15772#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [TGAAGGGNTATTGACCAGCTTCTAAACTTGGNGCTTGATGAAGCGNTTTGAATTGGAAAGAGAGCAAGNTGATCCATTGAAACTATGCAGGGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTACAGCGGTGATGCTTGTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCGTGTCTCTTATGAACACCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAAAAAAAAAAAAAAAAA] [+] EMBL AU029293 [TGAAGGGNTATTGACCAGCTTCTAAACTTGGNGCTTGATGAAGCGNTTTGAATTGGAAAGAGAGCAAGNTGATCCATTGAAACTATGCAGGGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTACAGCGGTGATGCTTGTATCGCCAACCGATGGAACGGACGAGATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGGAGCTGATGGTTCTCCTAGTCAAGATCCATGCTCTCCCAGTAGAGAGGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCGTGTCTCTTATGAACACCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAAAAAAAAAAAAAAAAA] consensusID : consensus_15772#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [GGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTAGAACAGCGGTGTATGCTTGTATCGCCAACCGATGGAACGGACGAAATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGAGCTGATGGTTCTCCCTAATCAAGATCCATGCTCTCCCCAGTAAAAAAGGCCCTTTGTTTTTAACTCCATGTTTATCCTGGGTGCCCCCAGTCTCTTTTATGAACTCCGTGTTCTCTTTTATTGAACACCCAAGGTTGGGTGGGTCCTTGTTCCTGTTTCCACCTCCCAAAACTTGAATTTCCTGGAAAAATTCCCCTGGCCTTTGTTTTTCCAAAAATTTTGAATCCCCCCCTTTTTCCCCCCTTTTTTTCCGGG] [+] EMBL AA754178 [GGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTAGAACAGCGGTGTATGCTTGTATCGCCAACCGATGGAACGGACGAAATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGAGCTGATGGTTCTCCCTAATCAAGATCCATGCTCTCCCCAGTAAAAAAGGCCCTTTGTTTTTAACTCCATGTTTATCCTGGGTGCCCCCAGTCTCTTTTATGAACTCCGTGTTCTCTTTTATTGAACACCCAAGGTTGGGTGGGTCCTTGTTCCTGTTTCCACCTCCCAAAACTTGAATTTCCTGGAAAAATTCCCCTGGCCTTTGTTTTTCCAAAAATTTTGAATCCCCCCCTTTTTCCCCCCTTTTTTTCCGGG] consensusID : consensus_15772#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [NNNTTCNGGGTGCAGGATTCGGCACGAGGGGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTACAGCGGTGATGCTTGTATCGCCAACCGATGGAACGGACGANATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGGAGCTGATGGTTCTCCTAGTCAANATCCATGCTCTCCCAGTANANANGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCGTGTCTCTTATGAACACCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTCAGATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAA] [+] EMBL AA752748 [NNNTTCNGGGTGCAGGATTCGGCACGAGGGGAAAACCAGACAGCTTGGTCTTATTGTCTGTAGGGGTACAGCGGTGATGCTTGTATCGCCAACCGATGGAACGGACGANATTGCCAACCCCTTCCAATCTGATGGTGCATAAACCTGCAGGAGCTGATGGTTCTCCTAGTCAANATCCATGCTCTCCCAGTANANANGCCTTTGTATTAACTCATGTAATCTGGTGCCACAGTCTCTTATGACTCGTGTCTCTTATGAACACCAGGTGGTGGTCTGTTCTGTACCACTCGAAACTGATTTCTGAAGATCCTTGCTTTGTGTCAGATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15772#1 ------------------------------------------------------------ consensus_15772#5 ------------------------------------------------------------ consensus_15772#3 ------------------------------------------------------------ consensus_15772#4 ------------------------------------------------------------ consensus_15772#0 TGGACTGAAGGAGTAGAAAGAAAAACACAACACCATCAACCCCCGCATCCGCCACCGCCG 60 consensus_15772#2 ------------------------------------------------------------ consensus_15772#1 ------------------------------------------------------------ consensus_15772#5 ------------------------------------------------------------ consensus_15772#3 ------------------------------------------------------------ consensus_15772#4 ------------------------------------------------------------ consensus_15772#0 CCACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCGGCTAAGGTCCGGGATGTC 120 consensus_15772#2 ------------------------------------------------------------ consensus_15772#1 ------------------------------------------------------------ consensus_15772#5 ------------------------------------------------------------ consensus_15772#3 ------------------------------------------------------------ consensus_15772#4 ------------------------------------------------------------ consensus_15772#0 GGGGCGCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGACAAGGGCGTCCAGGTCAA 180 consensus_15772#2 ------------------------------------------------------------ consensus_15772#1 ----------------------------------AGGTCTATGACCCAGCTTCTAAACTT 26 consensus_15772#5 ------------------------------------------------------------ consensus_15772#3 -------------------------------TGAAGGGNTATTGACCAGCTTCTAAACTT 29 consensus_15772#4 ------------------------------------------------------------ consensus_15772#0 GCTCACCGGCGGCAGGCAAGTTACAGGGACTTTGAAGGGCTATGACCAGCTTCTAAACTT 240 consensus_15772#2 ------------------------------------------------------------ consensus_15772#1 GGTGCCTTGATGAACCGGTTGGAATTTGAAAGAGACCCAGATGGATCCACTGGAAACCTA 86 consensus_15772#5 -------------------------------------NNNTTCNGGGTGCAGGATTCGGC 23 consensus_15772#3 GGNGC-TTGATGAAGCGNTTTGAATTGGAAAGAGAGCAAGNT-GATCCATTGAAACT--- 84 consensus_15772#4 ------------------------------------------------------------ consensus_15772#0 GGTGC-TTGATGAAGCGGTT-GAATTTGAAAGAGAGCAAGAT-GATCCATTGAAACT--- 294 consensus_15772#2 ----------------------------------------------------CAACCCCC 8 consensus_15772#1 TCCAGGGAAAACCCAGACCACGCTTGGTCTTATGTGG-TCTTTAAGGGGTACAC---GCG 142 consensus_15772#5 ACGAGGGGAAAACCAGAC--AGCTTGGTCTTAT--TG-TCTGTA-GGGGTACA----GCG 73 consensus_15772#3 ATGCAGGGAAAACCAGAC--AGCTTGGTCTTAT--TG-TCTGTA-GGGGTACA----GCG 134 consensus_15772#4 ------GGAAAACCAGAC--AGCTTGGTCTTAT--TG-TCTGTA-GGGGTAGAACA-GCG 47 consensus_15772#0 -ATCAGGGAAAACCAGAC--AGCTTGGTCTTAT--TG-TCTGTA-GGGGTACA----GCG 343 consensus_15772#2 GCATCCGCCACCGCCGCC--ACCACCCCCTAACTCCGATTTGAAGCGACCAGAGGCCGCG 66 * * * * * * ** * * * * * * * * *** consensus_15772#1 GTAGATGCTTGTATCCCCAAA-CCAGATGGGAACAAGACGAGTATGCCCAAACCCCTGGC 201 consensus_15772#5 GT-GATGCTTGTATCGCCAAC-C--GATGGAAC--GGACGANATTGCC--AACCCCT--T 123 consensus_15772#3 GT-GATGCTTGTATCGCCAAC-C--GATGGAAC--GGACGAGATTGCC--AACCCCT--T 184 consensus_15772#4 GTGTATGCTTGTATCGCCAAC-C--GATGGAAC--GGACGAAATTGCC--AACCCCT--T 98 consensus_15772#0 GT-GATGCTTGTATCGCCAAC-C--GATGGAAC--GGACGAGATTGCC--AACCCCT--T 393 consensus_15772#2 GCTAAGGTCCGGGATGTCGGGGCGCAAGGAGACGGTGCTGGACCTGGCCAAGTTCGTCGA 126 * * * * * * * * * * * ** * * * * consensus_15772#1 CAAATCTGTATGGGTCGCAATAAACCTCGCAGGAGCTGATGGGTTCTC----CTAGTCAA 257 consensus_15772#5 CCAATCTG-ATGGTGC---ATAAACCT-GCAGGAGCTGATGG-TTCTC----CTAGTCAA 173 consensus_15772#3 CCAATCTG-ATGGTGC---ATAAACCT-GCAGGAGCTGATGG-TTCTC----CTAGTCAA 234 consensus_15772#4 CCAATCTG-ATGGTGC---ATAAACCT-GCAG-AGCTGATGGTTCTCC----CTAATCAA 148 consensus_15772#0 CCAATCTG-ATGGTGC---ATAAACCT-GCAGGAGCTGATGG-TTCTC----CTAGTCAA 443 consensus_15772#2 CAAGGGCGTCCAGGTC-----AAGCTCACCGGSGGCAGGCAAGTTACAGGGACTTTKGAR 181 * * * * * ** * * * ** * * ** * consensus_15772#1 GATCCATGGCTTCTCCCAAGTAGAGAGG--CCTTTGTATT-AACTC---ATGTAATCTGG 311 consensus_15772#5 NATCCATG--CTCTCCCA-GTANANANG--CCTTTGTATT-AACTC---ATGTAATCTGG 224 consensus_15772#3 GATCCATG--CTCTCCCA-GTAGAGAGG--CCTTTGTATT-AACTC---ATGTAATCTGG 285 consensus_15772#4 GATCCATG--CTCTCCCCAGTAAAAAAGGCCCTTTGTTTTTAACTCCATGTTTATCCTGG 206 consensus_15772#0 GATCCATG--CTCTCCCA-GTAGAGAGG--CCTTTGTATT-AACTC---ATGTAATCTGG 494 consensus_15772#2 GGGCTAWKRACCMRSCTCTWAACCTTGGKGCCTTAATG---AAGCCG--GTTGAATTTGA 236 * * * * * **** * ** * * * ** consensus_15772#1 GTGCGCCCACAGTCTCTTATGGACTC-GTGT---CTCTTAT-GGACCACCCAGGT--GGT 364 consensus_15772#5 -TGC---CACAGTCTCTTATG-ACTC-GTGT---CTCTTAT-GAAC--ACCAGGT--GGT 270 consensus_15772#3 -TGC---CACAGTCTCTTATG-ACTC-GTGT---CTCTTAT-GAAC--ACCAGGT--GGT 331 consensus_15772#4 GTGCCCCCAGTCTCTTTTATGAACTCCGTGTTCTCTTTTATTGAACACCCAAGGTTGGGT 266 consensus_15772#0 -TGC---CACAGTCTCTTATG-ACTC-GTGT---CTCTTAT-GAAC--ACCAGGT--GGT 540 consensus_15772#2 -------AAGAGAGCSAGATG-ATCCMTTGGAACTATCTVGGGGRAAACCMGACAGCSTT 288 * *** * * ** * * * * consensus_15772#1 GG---TCTGTTC-----TGTACCACTCGAAACTGA---TTTCTGAAGA-CCTTGCTTTG- 411 consensus_15772#5 GG---TCTGTTC-----TGTACCACTCGAAACTGA---TTTCTGAAGATCCTTGCTTTG- 318 consensus_15772#3 GG---TCTGTTC-----TGTACCACTCGAAACTGA---TTTCTGAAAA------------ 368 consensus_15772#4 GGGTCCTTGTTCCTGTTTCCACCTCCCAAAACTTGAATTTCCTGGAAAAATTCCCCTGGC 326 consensus_15772#0 GG---TCTGTTC-----TGTACCACTCGAAACTGA---TTTCTGAAGATCCTTGCTTTG- 588 consensus_15772#2 GG--TCTTATTGS---CTSTAGGGGBTACMACMSS------HTGAADCSCTGTATCGCCC 337 ** * ** * * ** ** * consensus_15772#1 -------TGTCAAGAATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAAA 464 consensus_15772#5 -------TGTCAG--ATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAA- 368 consensus_15772#3 ----------AAAAAAAAAAAAAA------------------------------------ 382 consensus_15772#4 CTTTGTTTTTCCAAAAATTTTGAATCCCCCCCTTTTTCCCCCCTTTTTTTCCGGG----- 381 consensus_15772#0 -------TGTCAG--ATATATGAATCGCATTATGCTCTTGTTCGGTTTGTTCAAAAAAAN 639 consensus_15772#2 AM-------CCSATRGGACACGA--CGMGAGTTGYCCAMACCCTTCCAATMTGATA---- 384 * consensus_15772#1 AA--------------------- 466 consensus_15772#5 ----------------------- consensus_15772#3 ----------------------- consensus_15772#4 ----------------------- consensus_15772#0 NNNNNNNNNNNNNNNNNNNNAAA 662 consensus_15772#2 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||