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Oryza sativa
cluster # 1578 cluster # 1578       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1578#0 length = 2271 sequences # 2  

consensusID : consensus_1578#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2271
fasta sequence
                              [GCGGAACGCCTCCAGGAACATCGAGTTCTCCTGGGACCCCGTGCCGCTGCCCAACGACCCGACGCCCGGGTACATCGCCATCTTCCACTTCTCCGAGCTGCAGCTCCTCCCCGGCAACGCCGTGCGCGAGTTCTACATCAACCTCAACGGCAAGCCGTGGTCCCTGACCGCCTTCAAGCCGGAGTACCTCTACAACGACGCCACCTTCAACCGGAACCCATTCCTACGGTACCCGCAGTACAACATCTCCATCAACGCCACCGCCAACTCGACGCTGCCGCCGCTCATCAACGCCGTCGAGGTGTTCTCCGTCATCCCCACTGCCACCATTGGCACTGACCCAGAGGACGTGGCTGCAATCACGGCGATCAAGGAGAAGTATCAGGTGGTGAAGAACTGGATGGGTGACCCATGTGTTCCGAAGATGCTTGCGTGGGACAAGTTGACCTGCAGCTATGCCATTTCTAACCCTGCAAGAATCATTGGCCTAAACCTGTCCTCCAGTGGTTTGAGCGGTGAGGTATCGTCCTATTTCGGGAATCTTAAGGCTATTCAAAACTTGGATTTGTCAAATAATAAATTGACAGGTCCAATTCCAGACGCCCTTTCACAGTTACCTTCATTGACATTTCTAGATTTGACAGGAAATCAACTCAGTGGATCGATCCCGTCTGGTCTTCTCAAGAGAATTCAAGATGGCTCTCTAAATCTAAGATATGGAAATAATCCAAACCTCTGCACTAATGGCGATTCATGCCAGCCAGCAAAAAAGAAGAGCAAGCTAGCTATCTACATAGTTATTCCAATAGTTATAGTTCTGGTTGTGGTGATAATATCAGTGGCAGTACTACTTTGTTGCCTGTTGAGACGGAAAAAGCAAGCAATGAGCAATTCTGTGAAGCCACAAAATGAGACAGTGAGCAATGTGTCGTCAAATGGCGGATACGGGCATAGTTCATCACTACAACTTAAGAATCGTCGATTTACGTACAATGAACTTGAGAAGATAACGAACAACTTCCAGCGGGTGCTTGGCCGTGGAGGGTTTGGGTACGTTTACGACGGCTTCTTGGAGGATGGCACTCAAGTGGCAGTGAAATTGCGGTCTGAATCTTCCAATCAAGGTGCTAAGGAGTTCCTCGCGGAGGCTCAAATTTTAACCCGGATTCATCACAAGAATCTTGTCTCTATGATTGGTTACTGTAAGGATGGGGAATACATGGCACTTGTATATGAGTACATGTCAGAAGGAACACTACAAGAACACATTGCAGGTAAAAACAACAACAGGATATATTTAACCTGGAGAGAGAGGCTTCGAATAGCACTAGAATCTGCACAAGGGCTAGAATACCTACACAAGGCGTGCAACCCACCACTTATTCATAGGGATGTGAAGGCGACCAACATCCTATTGAACACAAGGCTTGAGGCGAAGATTGCTGACTTTGGCCTATCCAAGACATTCAATCACGTTAATGACACCCATGTATCTACGAACACGCTTGTTGGCACACCTGGATATGTGGATCCAGAGTACCAAGCAACAATGCAACCAACCACCAAGAGCGACGTCTATAGCTTTGGTGTTGTCTTATTGGAGTTGATCACAGGGAAGCCGTCTATTCTACGTGAACCAGGGCCCATTAGCATCATCCAGTGGGCACGGCAACGTTTGGCACGAGGTAACATCGAAGGTGTGGTGGATGCACACATGCATGGTGACCATGATGTGAATGGTGTGTGGAAGGCCGCAGACATTGCCCTTAAATGCACCGCACAGACATCGACACAACGACCCACTATGACCGATGTGGTAGCTCAGCTGCAGGAGTGCCTAGAGCTCGAGGATAGGCGATGTGGCATGGAAGATACATATAACAACTTCTATGCCGGCAACAACAATGATCCCAACTCAAGTTATAACATGTACAACACGGACCAGTCCACTGATGTGAGTCAAAACAACACGATGGAGCATAATTTTGAAAGAGTGCCAACCATGGCTACAGGGCCAGTTGCACGATAAAGGCCTTTGCCAATCTGATCCGAGACTGCTAGTCCTAAAATAGATACATGCAGAACTGAAACAATATTGTTGCTTTAATTTACCAAAGTAAATGCAAGCGCATAAAGTTTCAAACAATCAAGATCTAGAGCTTTTACCGTGTGGAATTTGTAATCAATACACTTATCTATTCTTTGATATTTATAACTCTTCCATACTATTCTTCAAGAAGAGAAAAGTCAATATACACCTAATAATTTTTT]

[+] EMBL AK073571             [GCGGAACGCCTCCAGGAACATCGAGTTCTCCTGGGACCCCGTGCCGCTGCCCAACGACCCGACGCCCGGGTACATCGCCATCTTCCACTTCTCCGAGCTGCAGCTCCTCCCCGGCAACGCCGTGCGCGAGTTCTACATCAACCTCAACGGCAAGCCGTGGTCCCTGACCGCCTTCAAGCCGGAGTACCTCTACAACGACGCCACCTTCAACCGGAACCCATTCCTACGGTACCCGCAGTACAACATCTCCATCAACGCCACCGCCAACTCGACGCTGCCGCCGCTCATCAACGCCGTCGAGGTGTTCTCCGTCATCCCCACTGCCACCATTGGCACTGACCCAGAGGACGTGGCTGCAATCACGGCGATCAAGGAGAAGTATCAGGTGGTGAAGAACTGGATGGGTGACCCATGTGTTCCGAAGATGCTTGCGTGGGACAAGTTGACCTGCAGCTATGCCATTTCTAACCCTGCAAGAATCATTGGCCTAAACCTGTCCTCCAGTGGTTTGAGCGGTGAGGTATCGTCCTATTTCGGGAATCTTAAGGCTATTCAAAACTTGGATTTGTCAAATAATAAATTGACAGGTCCAATTCCAGACGCCCTTTCACAGTTACCTTCATTGACATTTCTAGATTTGACAGGAAATCAACTCAGTGGATCGATCCCGTCTGGTCTTCTCAAGAGAATTCAAGATGGCTCTCTAAATCTAAGATATGGAAATAATCCAAACCTCTGCACTAATGGCGATTCATGCCAGCCAGCAAAAAAGAAGAGCAAGCTAGCTATCTACATAGTTATTCCAATAGTTATAGTTCTGGTTGTGGTGATAATATCAGTGGCAGTACTACTTTGTTGCCTGTTGAGACGGAAAAAGCAAGCAATGAGCAATTCTGTGAAGCCACAAAATGAGACAGTGAGCAATGTGTCGTCAAATGGCGGATACGGGCATAGTTCATCACTACAACTTAAGAATCGTCGATTTACGTACAATGAACTTGAGAAGATAACGAACAACTTCCAGCGGGTGCTTGGCCGTGGAGGGTTTGGGTACGTTTACGACGGCTTCTTGGAGGATGGCACTCAAGTGGCAGTGAAATTGCGGTCTGAATCTTCCAATCAAGGTGCTAAGGAGTTCCTCGCGGAGGCTCAAATTTTAACCCGGATTCATCACAAGAATCTTGTCTCTATGATTGGTTACTGTAAGGATGGGGAATACATGGCACTTGTATATGAGTACATGTCAGAAGGAACACTACAAGAACACATTGCAGGTAAAAACAACAACAGGATATATTTAACCTGGAGAGAGAGGCTTCGAATAGCACTAGAATCTGCACAAGGGCTAGAATACCTACACAAGGCGTGCAACCCACCACTTATTCATAGGGATGTGAAGGCGACCAACATCCTATTGAACACAAGGCTTGAGGCGAAGATTGCTGACTTTGGCCTATCCAAGACATTCAATCACGTTAATGACACCCATGTATCTACGAACACGCTTGTTGGCACACCTGGATATGTGGATCCAGAGTACCAAGCAACAATGCAACCAACCACCAAGAGCGACGTCTATAGCTTTGGTGTTGTCTTATTGGAGTTGATCACAGGGAAGCCGTCTATTCTACGTGAACCAGGGCCCATTAGCATCATCCAGTGGGCACGGCAACGTTTGGCACGAGGTAACATCGAAGGTGTGGTGGATGCACACATGCATGGTGACCATGATGTGAATGGTGTGTGGAAGGCCGCAGACATTGCCCTTAAATGCACCGCACAGACATCGACACAACGACCCACTATGACCGATGTGGTAGCTCAGCTGCAGGAGTGCCTAGAGCTCGAGGATAGGCGATGTGGCATGGAAGATACATATAACAACTTCTATGCCGGCAACAACAATGATCCCAACTCAAGTTATAACATGTACAACACGGACCAGTCCACTGATGTGAGTCAAAACAACACGATGGAGCATAATTTTGAAAGAGTGCCAACCATGGCTACAGGGCCAGTTGCACGATAAAGGCCTTTGCCAATCTGATCCGAGACTGCTAGTCCTAAAATAGATACATGCAGAACTGAAACAATATTGTTGCTTTAATTTACCAAAGTAAATGCAAGCGCATAAAGTTTCAAACAATCAAGATCTAGAGCTTTTACCGTGTGGAATTTGTAATCAATACACTTATCTATTCTTTGATATTTATAACTCTTCCATACTATTCTTCAAGAAGAGAAAAGTCAATATACACCTAATAATTTTTT]
[+] EMBL CA757346             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCCAGTTGCACGATAAAGGCCTTTGCCAATCTGATCCGAGACTGCTAGTCCTAAAATAGATACATGCAGAACTGAAACAATATTGTTGCTTTAATTTACCAAAGTAAATGCAAGCGCATAAAGTTTCAAACAATCAAGATCTAGAGCTTTTACCGTGTGGAATTTGTAATCAATACACTTATCTATTCTTTGATATTTATAACTCTTCCATACTATTCTTCAAGAAAAAAAA                          ]


>consensus_1578#0 GCGGAACGCCTCCAGGAACATCGAGTTCTCCTGGGACCCCGTGCCGCTGCCCAACGACCC GACGCCCGGGTACATCGCCATCTTCCACTTCTCCGAGCTGCAGCTCCTCCCCGGCAACGC CGTGCGCGAGTTCTACATCAACCTCAACGGCAAGCCGTGGTCCCTGACCGCCTTCAAGCC GGAGTACCTCTACAACGACGCCACCTTCAACCGGAACCCATTCCTACGGTACCCGCAGTA CAACATCTCCATCAACGCCACCGCCAACTCGACGCTGCCGCCGCTCATCAACGCCGTCGA GGTGTTCTCCGTCATCCCCACTGCCACCATTGGCACTGACCCAGAGGACGTGGCTGCAAT CACGGCGATCAAGGAGAAGTATCAGGTGGTGAAGAACTGGATGGGTGACCCATGTGTTCC GAAGATGCTTGCGTGGGACAAGTTGACCTGCAGCTATGCCATTTCTAACCCTGCAAGAAT CATTGGCCTAAACCTGTCCTCCAGTGGTTTGAGCGGTGAGGTATCGTCCTATTTCGGGAA TCTTAAGGCTATTCAAAACTTGGATTTGTCAAATAATAAATTGACAGGTCCAATTCCAGA CGCCCTTTCACAGTTACCTTCATTGACATTTCTAGATTTGACAGGAAATCAACTCAGTGG ATCGATCCCGTCTGGTCTTCTCAAGAGAATTCAAGATGGCTCTCTAAATCTAAGATATGG AAATAATCCAAACCTCTGCACTAATGGCGATTCATGCCAGCCAGCAAAAAAGAAGAGCAA GCTAGCTATCTACATAGTTATTCCAATAGTTATAGTTCTGGTTGTGGTGATAATATCAGT GGCAGTACTACTTTGTTGCCTGTTGAGACGGAAAAAGCAAGCAATGAGCAATTCTGTGAA GCCACAAAATGAGACAGTGAGCAATGTGTCGTCAAATGGCGGATACGGGCATAGTTCATC ACTACAACTTAAGAATCGTCGATTTACGTACAATGAACTTGAGAAGATAACGAACAACTT CCAGCGGGTGCTTGGCCGTGGAGGGTTTGGGTACGTTTACGACGGCTTCTTGGAGGATGG CACTCAAGTGGCAGTGAAATTGCGGTCTGAATCTTCCAATCAAGGTGCTAAGGAGTTCCT CGCGGAGGCTCAAATTTTAACCCGGATTCATCACAAGAATCTTGTCTCTATGATTGGTTA CTGTAAGGATGGGGAATACATGGCACTTGTATATGAGTACATGTCAGAAGGAACACTACA AGAACACATTGCAGGTAAAAACAACAACAGGATATATTTAACCTGGAGAGAGAGGCTTCG AATAGCACTAGAATCTGCACAAGGGCTAGAATACCTACACAAGGCGTGCAACCCACCACT TATTCATAGGGATGTGAAGGCGACCAACATCCTATTGAACACAAGGCTTGAGGCGAAGAT TGCTGACTTTGGCCTATCCAAGACATTCAATCACGTTAATGACACCCATGTATCTACGAA CACGCTTGTTGGCACACCTGGATATGTGGATCCAGAGTACCAAGCAACAATGCAACCAAC CACCAAGAGCGACGTCTATAGCTTTGGTGTTGTCTTATTGGAGTTGATCACAGGGAAGCC GTCTATTCTACGTGAACCAGGGCCCATTAGCATCATCCAGTGGGCACGGCAACGTTTGGC ACGAGGTAACATCGAAGGTGTGGTGGATGCACACATGCATGGTGACCATGATGTGAATGG TGTGTGGAAGGCCGCAGACATTGCCCTTAAATGCACCGCACAGACATCGACACAACGACC CACTATGACCGATGTGGTAGCTCAGCTGCAGGAGTGCCTAGAGCTCGAGGATAGGCGATG TGGCATGGAAGATACATATAACAACTTCTATGCCGGCAACAACAATGATCCCAACTCAAG TTATAACATGTACAACACGGACCAGTCCACTGATGTGAGTCAAAACAACACGATGGAGCA TAATTTTGAAAGAGTGCCAACCATGGCTACAGGGCCAGTTGCACGATAAAGGCCTTTGCC AATCTGATCCGAGACTGCTAGTCCTAAAATAGATACATGCAGAACTGAAACAATATTGTT GCTTTAATTTACCAAAGTAAATGCAAGCGCATAAAGTTTCAAACAATCAAGATCTAGAGC TTTTACCGTGTGGAATTTGTAATCAATACACTTATCTATTCTTTGATATTTATAACTCTT CCATACTATTCTTCAAGAAGAGAAAAGTCAATATACACCTAATAATTTTTT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)