These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15787#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1454 fasta sequence [GGCGAGAGGAAGGGGAGGGGAAGAGGAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA-AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT-ATGTCATCTTTGTTCCGCTCCGGTGGATC-TACT-ACCGCTAT-AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC-ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGTTATATTCACTATCCGGTGGTGGAATCCACAAACTTTTGCTGCGATGCATCCAGAA-GGAAGAGCAGCCAGAGTCACATGGCCTTATGT-GGGGGACAAATCATACCTGTGGACAT-GGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGAT-CCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCAC-TCAT-GTACATACTAC-TCCAAGCGCTGTT-CA-CGGTGGCGACA-ATGGCGC-TTACCGTTCCC-ATATT-CCTGTCCT-TCCAGATGCAT-GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA-ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG-CCAGAATG-CTGAAGAATCA-CAAGGGGACCTGTCAG-CAAACGG-CCAG-CACTCATCCGAG-CATAGCTAAGTCA-CTGA-AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA-CA-CTGTGGATAGCTTCTCTGTGTG-TTGTGTGCTCGAAA-CAAATTAT-CCATGTT---CTGTTGGGTTGAGAATT-TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAAATATTTTTCTTTTCCCAGTCAACCCATGATATTCTCTGAAACAAGTGAAATTGACCATGACAAATTTCCGTGCGTGAAAAAAAAAAAAAAAA] [+] EMBL AK069774 [GGCGAGAGGAAGGGGAGGGGAAGAGGAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGTTATATTCACTATCCGGTGGTGGAATCCACAAACTTTTGCTGCGATGCATCCAGAA GGAAGAGCAGCCAGAGTCACATGGCCTTATGT GGAGGACAAATCATACCTGTGGACAT GGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGAT CCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CA CGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAATTATTT ] [+] EMBL CB630683 [ GGGCGTGGAAGAGGAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCACTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGTTATATTCACTATCCGGTGGTGGAATCCACAAACTTTTGCTGCGATGCATCCAGAA GGAAGAGCAGCCAGAGTCACATGGCCTTATGT GGGGGACAAATCATACCTGTGGACAT GGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTNAAGGAT CCTGAAGTCA ] [+] EMBL CA767442 [ AGAGGAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGT CACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGACTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGNTATATTCACTATCCGGTGGTGGAATCCACAAACTTTTGCTGCGATGCATNCAGAANGAAAGAGCAGCCAGAGTCACATGGCCTTATGTGGGGGGACAAATCATACCTGNGGACATGGGCTGGTTGCTGGTCCTCTAGCTGCTTACACCCTGGGGCAACTTATGGATTTTCTCANAGTNAA GGGCTGCGTCGGNAAAGGCTGNTNAAGGAT CCTGNAGTCATGA NTCATACAGGGAGCTC ] [+] EMBL OS1252A [ GAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGNGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTNCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGNTCCGGTGG ] [+] EMBL C28719 [ GACTGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCC GCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTNTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTNTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACAATTTTCTCCTTGTTATGATTCTNTTCTATCCAAAGGATG ] [+] EMBL AU062596 [ TGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCTNATGTCATCTTTGTTCCGCTCCGGTGGATCTTACTAACCGCTATAAAGAAATGGCATTAC ] [+] EMBL AU062656 [ TGGAAGGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTG CGCNGCCGCGGANAGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCG TTNCTTNGGCATTAATTGTGTGGCG TNCAGTTTGGTTTTAAGCTCAATTTGATAAA TTG TAGTGT CNGA TCACC TTTG CTGGGATAG TATATTNA TATCC GTGGTGGAt ] [+] EMBL CF319219 [ GGTTCGATGGCGTCGGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTCCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGTTA ] [+] EMBL CF324603 [ GGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGA AGTCCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCACCAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGGATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTGCCTGTTCT ATGTCATCTTTGTTCCGCTCCGGTGGATC TACT ACCGCTAT AAGAAATGGCATTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTTCTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGCTTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTC ATTTGATAAACTTGTTAGTGTCCTGATTCACCTTTTGCCTGGCATAGT ] [-] EMBL CB630684 [ AAATCATACCTGTGGACAT GGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGAT CCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CA CGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAATTATTTTTCTTTTCCCAGTCAACCCATGATATTCTCTGAAACAAGTGAAATTGACCATGACAAATTT ] [+] EMBL AU108583 [ GTCCCCCTAGCTGCTTACACCCTGTGGCAANTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCCCTGAAGTCATGACATCATACAGGGAGCTTTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CA CGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAAAAAAAAAAAaaa ] [+] EMBL BI798670 [ GTGGAGACTCAGCGGGCTTCTT GCGACAGGAACC GCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CA CGGTGGCGACACATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA C AGGGGACCTGTCAG C AACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCCAACCATCGC AACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA C AATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAAAAAAA ] [+] EMBL BI798585 [ GAAACTCAGCGGGCTTCTTGGCGACAGGAACCGCCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CA CGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACCTGGACACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGACAAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CACCTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAACCAAATTAT CCATGTT CTGTTGGGTTGAGAATTCTTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAAA ] [+] EMBL BI798286 [ AGACTCAGCGGGCTTCTT GCGACAGGAACCGGCCAC TCAT GTACATACTAC TCCAAGCGCTGTT CACCGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACC AACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA C AATTAT CCATGTT CT TT GGTTGAGAATT TTGATGCGTGTGTGA GTTTGATCTATTCAGACTCCAGCCAGGGACCATTTCTCAGGTAGAAAAA ] [+] EMBL BI799355 [ GCGACAGGAACC GCCACGTCAT GTACATACTACGTCCAAGCGCTGTT CAGCGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCTGTCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAGCCCAGAATGCCTGAAGAATCACCAAGGGGACCTGTCAGCCAAACGGCCCAGCCACTCATCCGAGCCATAGCTAAGTCACCTGA AAAACCCAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CACCTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAAA ] [+] EMBL AU093069 [ ant TCATGGTACATACTAC TCCAAGCNCTGTT CA CGGTGGCGACA ATGCGGCTTTACCGTTCCCAATATTCCCTGTCCT TCCAAATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTNATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATNAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTNAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTNAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAATTATTTTTCTTTTCCCAaaaaaaaa ] [+] EMBL BI798260 [ GTACATACTAC TCCAAGC CTGTT CA CGGT GCGACA ATGGCGC TTACCGTTCCC ATATT CCTGGTCT TCCAGATGCATGGTGTTCTTCCAGATACTCAAGGTGTGCGCTTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGCCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGA CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCA CAAACGC CCAG CACTCATCCGAG CATAG TAAGTCA CTGA AAAACC AACCATCGC AACGGTA CATTTTTCAGTTTTTCACCAGTTAATA C CTGTGGATAGCTTCTCTGTGT TTGTGTGCTCG AA CCAATTA CCATGTT CTGTTGGTTTGAGAATT TTGATGCGTGT TGA GTTTGATCTATTCAGACTCCAGCCAGGGA CATTTCTCAGGTAGAAAAA ] [+] EMBL BI799654 [ ACTAC TCCAAGC CTGTTCCA CGGT GCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA C AGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACC AACCATCGC AACGGTA CATTTTTCAGTTTTTCACCAGTTAATACCC CTGTGGATAGCTTCTCTGTGTGCTTGTGTGCTCGAAA CAAATTATCCCATGTTTTCCTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACT CAGGCAGGGA CATTTCTCAGGTAGAAAATTATTTTTCTTTTCCCAGTCAAaaaaaaaa ] [+] EMBL C98229 [ TT CN CGGTGGCGACA ATGGCGC TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCAAGATNCTCAAGGTGTGCGCGTCGACATGGN ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAATTATTTTTCTTTTCCCAGTCAACCCATGATATTCACTGAAACTTCTGATATTGACCATGACAAATTTCCGTGCGTGAAAAAAAAAAAAAAAA] [+] EMBL AU166500 [ TTACCGTTCCC ATATT CCTGTCCT TCCAGATGCAT GTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGA ACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAG CCAGAATG CTGAAGAATCA CAAGGGGACCTGTCAG CAAACGG CCAG CACTCATCCGAG CATAGCTAAGTCA CTGA AAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATA CA CTGTGGATAGCTTCTCTGTGTG TTGTGTGCTCGAAA CAAATTAT CCATGTT CTGTTGGGTTGAGAATT TTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAAAAAAAAAAAaaa ] consensusID : consensus_15787#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 632 fasta sequence [ATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCACTCATATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTGTCAGCAAACGGCCAGCACTCATCCGAGCATAGCTAAGTCACTGAAAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATACACTGTGGATAGCTTCTCTGTGTGTTGTGTGCTCGAAACAAATTATCCATGTTCTGTTGGGTTGAGAATTTTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAAAAAATTATTTTTCTTTTCCCAGTCAACCCATGATATTCACTGAAACTTCTGATATTGCCCATGCCAAAAAAAAAAAAA] [-] EMBL CF319220 [ATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCACTCATATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTGTCAGCAAACGGCCAGCACTCATCCGAGCATAGCTAAGTCACTGAAAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATACACTGTGGATAGCTTCTCTGTGTGTTGTGTGCTCGAAACAAATTATCCATGTTCTGTTGGGTTGAGAATTTTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAAAAAA ] [-] EMBL CF310017 [ GTCAGCAAACGGCCAGCACTCATCCGAGCATAGCTAAGTCACTGAAAAACCAAACCATCGCAAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATACACTGTGGATAGCTTCTCTGTGTGTTGTGTGCTCGAAACAAATTATCCATGTTCTGTTGGGTTGAGAATTTTGATGCGTGTGTGAGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAATTATTTTTCTTTTCCCAGTCAACCCATGATATTCACTGAAACTTCTGATATTGCCCATGCCAAAAAAAAAAAAA] consensusID : consensus_15787#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence [CATGGACTGAAGGAGTAGAAAAATCCCAAACTTTTGCTGCGATGCATCCAGAAGGAAGAGCAGCCAGAGTCACATGGCCTTATGTGGAGGACAAATCATACCTGTGGACATGGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCACTCATGTACATACTACTCCAAGCGCTGTTCACGGTGGCGACAATGGCGCTTACCGTTCCCATATTCCTGTCCTTCCAGATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTGTCAGCAAACGGCCAGCACTC] [+] EMBL CF310016 [CATGGACTGAAGGAGTAGAAAAATCCCAAACTTTTGCTGCGATGCATCCAGAAGGAAGAGCAGCCAGAGTCACATGGCCTTATGTGGAGGACAAATCATACCTGTGGACATGGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTGGCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCCTGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTGGTGGAGACTCAGCGGGCTTCTTGGCGACAGGAACCGGCCACTCATGTACATACTACTCCAAGCGCTGTTCACGGTGGCGACAATGGCGCTTACCGTTCCCATATTCCTGTCCTTCCAGATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTGTCAGCAAACGGCCAGCACTC] [+] EMBL CF329717 [ TCCTTCCAGATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGA ] consensusID : consensus_15787#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 135 fasta sequence [AGCACAGAAAGCAAACAACATCTGGTGGAGACTNAGCGGGTCTTCTTGGTCGACNGGAACCGGCCACTCATGTACATACTACTCCAAGCNCTGTTCACGGTNGCGACAATNNCNTTACCGTTCCCATATTCCTGT] [+] EMBL AA750910 [AGCACAGAAAGCAAACAACATCTGGTGGAGACTNAGCGGGTCTTCTTGGTCGACNGGAACCGGCCACTCATGTACATACTACTCCAAGCNCTGTTCACGGTNGCGACAATNNCNTTACCGTTCCCATATTCCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 GGCGAGAGGAAGGGGAGGGGAAGAGGAGAGGAGGAAGGGACTGGAAGGTTCGATGGCGTC 60 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 GGAGGTGGAGGACGATGCGGCGGCGGTGCTCACCAACGGCGGTGCCGGCGCCGCGGAAGT 120 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 CCGGCGGAGGAGGGACCAAGCGAAGGAGATTCTGTCCAAGCAGGCCGTCAAGATCGCCAC 180 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 CAAGGCCGAGGAGCACGAGCGCTTCATCTTCAAGGTCACACACTTGCTGGGTGTTCTTGG 240 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 ATTTGGGACATTTTGCTACCTCCTGGGTGCCAGACCACAGGATGTGCCGTATGTGTACTG 300 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 CCTGTTCTATGTCATCTTTGTTCCGCTCCGGTGGATCTACTACCGCTATAAGAAATGGCA 360 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 TTACTATCTCCTGGACTTCTGTTACTATGCCAACACTTTTCTCCTTGTTATGATTCTCTT 420 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 CTATCCAAAGGATGAAAAGCTTTTCATGGTTTGCTTCTCATTTGCAGAGGGGCCGCTTGC 480 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 TTGGGCATTAATTGTGTGGCGCTGCAGCTTGGTTTTTAGCTCATTTGATAAACTTGTTAG 540 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 --------------------------------CATGGACTGAAGGAGTAGAAAAATCCCA 28 consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 TGTCCTGATTCACCTTTTGCCTGGCATAGTTATATTCACTATCCGGTGGTGGAATCCACA 600 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 AACTTTTGCTGCGATGCATCCAGAAGGAAGAGCAGCCAGAGTCACATGGCCTTATGTGGA 88 consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 AACTTTTGCTGCGATGCATCCAGAAGGAAGAGCAGCCAGAGTCACATGGCCTTATGTGGG 660 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 GGACAAATCATACCTGTGGACATGGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTG 148 consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 GGACAAATCATACCTGTGGACATGGCTGTTTGCTGTTCCTCTAGCTGCTTACACCCTGTG 720 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 GCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCC 208 consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 GCAACTTATGTATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCC 780 consensus_15787#1 -----------ATTTTCTCATAGTTAATGTGCTGCGTCGGCAAAGGCTGTTAAAGGATCC 49 consensus_15787#2 TGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTG 268 consensus_15787#3 ------------------------------------AGCACAGAAAGCAAACAACATCTG 24 consensus_15787#0 TGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTG 840 consensus_15787#1 TGAAGTCATGACATCATACAGGGAGCTCTCAAAGAAAGCACAGAAAGCAAACAACATCTG 109 ************************ consensus_15787#2 GTGGAGACTCAGCGGG-CTTCTTGG-CGACAGGAACCGGCCACTCATGTACATAC--TAC 324 consensus_15787#3 GTGGAGACTNAGCGGGTCTTCTTGGTCGACNGGAACCGGCCACTCATGTACATAC--TAC 82 consensus_15787#0 GTGGAGACTCAGCGGG-CTTCTTGG-CGACAGGAACCGGCCACTCATGTACATAC--TAC 896 consensus_15787#1 GTGGAGACTCAGCGGG-CTTCTTGG-CGACAGGAACCGGCCACTCATATGCATGTGGTCT 167 ********* ****** ******** **** **************** * *** * consensus_15787#2 TCCAAGCGCTGTTCACGGTGGCGACAATGGCGCTTACCGTTCCCATATTCCTGTCCTTCC 384 consensus_15787#3 TCCAAGCNCTGTTCACGGTNGCGACAATNNCN-TTACCGTTCCCATATTCCTGT------ 135 consensus_15787#0 TCCAAGCGCTGTTCACGGTGGCGACAATGGCGCTTACCGTTCCCATATTCCTGTCCTTCC 956 consensus_15787#1 TCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGAAGCTTCATCCTGGAGGTGA 227 **** ** * *** * * * * * ***** consensus_15787#2 AGATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGA-AGC 443 consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 AGATGCATGTGGTCTTCCAGATACTCAAGGTGTGCGCGTCGACATGGAACGGTGGA-AGC 1015 consensus_15787#1 TGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATGAAGCCCATGGAAGAGG 287 consensus_15787#2 TTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATG 503 consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 TTCATCCTGGAGGTGATGCCTAGGCAAGTCGTCCAGAAGGAGAAGAAGAAGCTAGAGATG 1075 consensus_15787#1 CTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTGTCAGCAAACGGCCAGCACT 347 consensus_15787#2 AAGCC---CATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTG 560 consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 AAGCC---CATGGAAGAGGCTAATTCGAGCCAGAATGCTGAAGAATCACAAGGGGACCTG 1132 consensus_15787#1 CATCCGAGCATAGCTAAGTCACTGAAAAACCAAACCATCGCAAACGGTAGCATTTTTCAG 407 consensus_15787#2 TCAGCAAACGGCCAGCACTC---------------------------------------- 580 consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 TCAGCAAACGGCCAGCACTCATCCGAGCATAGCTAAGTCACTGAAAAACCAAACCATCGC 1192 consensus_15787#1 TTTTTCACCAGTTAATACACTGTGGATAGCTTCTCTGTGTGTTGTGTGCTCGAAACAAAT 467 consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 AAACGGTAGCATTTTTCAGTTTTTCACCAGTTAATACACTGTGGATAGCTTCTCTGTGTG 1252 consensus_15787#1 TATCCATGTTCTGTTGGGTTGAGAATTTTGATGCGTGTGTGAGGTTTGATCTATTCAGAC 527 consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 TTGTGTGCTCGAAACAAATTATCCATGTTCTGTTGGGTTGAGAATTTTGATGCGTGTGTG 1312 consensus_15787#1 TCCAGGCAGGGAGCATTTCTCAGGTAAAAAATTATTTTTCTTTTCCCAGTCAACCCATGA 587 consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 AGGTTTGATCTATTCAGACTCCAGGCAGGGAGCATTTCTCAGGTAGAAAAATATTTTTCT 1372 consensus_15787#1 TATTCACTGAAACTTCTGATATTGCCCATGCCAAAAAAAAAAAAA--------------- 632 consensus_15787#2 ------------------------------------------------------------ consensus_15787#3 ------------------------------------------------------------ consensus_15787#0 TTTCCCAGTCAACCCATGATATTCTCTGAAACAAGTGAAATTGACCATGACAAATTTCCG 1432 consensus_15787#1 ------------------------------------------------------------ consensus_15787#2 ---------------------- consensus_15787#3 ---------------------- consensus_15787#0 TGCGTGAAAAAAAAAAAAAAAA 1454 consensus_15787#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||