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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 948 fasta sequence
[GGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTGCGCTGAGTAAACTGGTGAATGTGATTAGAATGAAAAAGAAGAAAAAGACCTGGAGGGGGGGCCCGGGACCAGATTGGGCCTATAGGGAGTAGTATAACTCGCCCTCACTGAGTAAGAGTTATCAATCAGGGGGATGGGGTAATCTTTGTAGTTTCTCGCCATGTGCGCCTGCGCGAGGTGGGCTGGGAGATGATGTGATAAAAGCGGGCTGTGGGTGGTGGGGTTGTTTGTATGGGTAATTGCTACATTTACGATTGTACTGCCTCATTAAATGCTCCTGCCGTTTTTGGTTATTTAGTTACAACAAGAGATTTCGGCTCGGGTGGGAGGTGGTGGGAGTGGGAGGGGTTTTTGGGGGTGTGGTTAGTCGGGTAGTGTGGGATGATTGGATGATCTTATGGTTGTGAGTTGTGTGATCTTGGTGGGCGTTGGCTCTCGCTGGTCCTGGTGGGCGCGGCCGGGTGCTGGTGATTGTTTTGCCGGGGATGTTG]
[+] EMBL BE040008 [GGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTGCGCTGAGTAAACTGGTGAATGTGATTAGAATGAAAAAGAAGAAAAAGACCTGGAGGGGGGGCCCGGGACCAGATTGGGCCTATAGGGAGTAGTATAACTCGCCCTCACTGAGTAAGAGTTATCAATCAGGGGGATGGGGTAATCTTTGTAGTTTCTCGCCATGTGCGCCTGCGCGAGGTGGGCTGGGAGATGATGTGATAAAAGCGGGCTGTGGGTGGTGGGGTTGTTTGTATGGGTAATTGCTACATTTACGATTGTACTGCCTCATTAAATGCTCCTGCCGTTTTTGGTTATTTAGTTACAACAAGAGATTTCGGCTCGGGTGGGAGGTGGTGGGAGTGGGAGGGGTTTTTGGGGGTGTGGTTAGTCGGGTAGTGTGGGATGATTGGATGATCTTATGGTTGTGAGTTGTGTGATCTTGGTGGGCGTTGGCTCTCGCTGGTCCTGGTGGGCGCGGCCGGGTGCTGGTGATTGTTTTGCCGGGGATGTTG]
[+] EMBL C99088 [ CCGGCGAGTGCGGGANGGNGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCNCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGA NCCCAGCTGCCTGTNCGCCGTGATNCTNTCNAACACGGCCAGGGTCGCCGGGATCAANCCGGA GTCGCCATCACCATCCCCAAGCGCTGCAACATNGCCGA ]
consensusID : consensus_15790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 789 fasta sequence
[CTGATCATACACACAAA-TTAAGTTGTGATCAT-CCGAGC-AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGC-GGTGGTGGTGGTGGTCGCCGGCGG-CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG-CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC-GATATCAAGACGTACGGATGCC-GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT-GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAAAAAAAAAACTCATTTTTTTCAACTAATGTAATTATCTAGAGGTGGGCCCGTGTCCAATTTTTCCTTTATTGATATTATTAACCCCGCTCACTTGCCGTTTTTAACAACGATGAATTGGAAAACTCTTGTTTACCAC]
[+] EMBL BE040818 [CTGATCATACACACAAA TTAAGTTGTGATCAT CCGAGC AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGC GGTGGTGGTGGTGGTCGCCGGCGG CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCCTGTGGGAGCTTANGCTTTGGGTCGGAATAAGCGAGAGTTCTTCATGTTCGGGGCTTTGCCACTTATTTGGACTATGCACGTGGTGGTTGNGAAAAT TGTATCCTGGTG TTCGTCTGAGT AACTGGT AATTTTATAAGAATAT CCAAAGCTTGCTTGCCAAAAATTATTACTCATTTTTTTCAACTAATGTAATTATCTAGAGGTGGGCCCGTGTCCAATTTTTCCTTTATTGATATTATTAACCCCGCTCACTTGCCGTTTTTAACAACGATGAATTGGAAAACTCTTGTTTACCAC]
[+] EMBL OSR22281A [ TCATACACACAAA TTAAGTTGTGATCAT CCGAGC AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGC GGTGGTGGTGGTGGNCGCCGGCGG CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGANGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGT ]
[+] EMBL AU165717 [ ATACACACAAATTTAAGTTGTGATCATCCCNAGCAAAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACNCAATAAGGGCGGGCAGGTTGGTGATCCTCGTGCCGGTGCC GGTGGTGGTGGTGGTCGCC GCGGNCGGGGCGNCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCACCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAAAAA ]
[+] EMBL AU184330 [ ATACACACAAA TTAAGTTGTGATCAT CCGAGC AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGCTGGTGGTGGTGGTGGTCGCCGGCGG CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGNAG ]
[+] EMBL OSR18852A [ CACACAAA TTAAGTTGTGATCAT CCGAGC AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGC GGTGGTGGTGGTGGTCGCCGGCGG CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGNTGGCGCTGCGGCTGGCGCCGTGCGTTTCGGCGNCGGACGACCCGCANTCGGCGCCGTCGAGCAGCTGCTGCTCGNCGGTNCACACCATCGGGCANA NCCCAGCTGCCTGTNCGCCGTGATGCTGTCCAACACGGCCA ]
[+] EMBL AU183327 [ TGTGATCAT CCGAGC AAAAGCAAAGCAAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGGCGGTGGC GGTGGTGGTGGTGGTCGCCGGCGG CGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAG ]
[+] EMBL AU064186 [ gGGGGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGGNGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAG CCCAGCTGCCTNTGCGCC ]
[+] EMBL C73730 [ ggGGNGCGGCGGAGGGCGCCGGCGAGTGCGGGAGGNNGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTNTCGGCGGCGGACGACCNGCAGTCGGCNCCGTCGAGCAGCTGCTGCTCGGCGGTGCACAACATCGGGCA ]
[-] EMBL BI306476 [ GCGGAGGGCGCCGGCGAGTGCGGGAGGGCGTCCCCCGACCGGGTGGCGCTGCGGCTGGCCCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCT ]
[-] EMBL BI306160 [ GCGTCCGCCGACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATAT ]
[-] EMBL BU672796 [ GACCGGGTGGCGCTGCGGCTGGCGCCGTGCGTGTCGGCGGCGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATAT ]
[+] EMBL AU184331 [ CGGACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGAAAAAAA ]
[+] EMBL AU184299 [ GACGACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGAAAAAAA ]
[+] EMBL AU182519 [ GACCCGCAGTCGGCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGGATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAAAAAA ]
[+] EMBL C99089 [ GGATCAAGCCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGNGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATC GATATCAAGACGTACGGATGCC GTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCT GTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGNATATACAAAAGNTTGNTTGACAAAAAAAAAAAaaaaa ]
consensusID : consensus_15790#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 784 fasta sequence
[CCCCCCCCAAAAAAGGGGGGGGGGGGGGGCCCCCCCCTCCGGGGCGCCCCCCCCCCCGGTTTTCCCCCCTTTTAATTTTCCCCGCTCTTTTATTTTTTGTTGGGAATTTGTGGGGGGGGGAAACCCTTTTTCCCCCCACGGGACCCCCTTTTTACCCCATGTTTTCGCATTTTTAAACCGCCCCCCCAAAAGGGGATTTTGCCCCCCCAAGGGCCCAAAAATTTCGGCCAAGGGGGGGTCCCCCCGCCCGGGGGGCCCTTCGGGCTGGCCCCGTGGGGTTTGGCGGGCGGACGACCCCGCAGTCGGGCCCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGC-TGTCCAACAC-GGCCAGGG-TCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAATCCGGGACGTAAATAAATTGACCATGCAATTAAGTGCGTGCGTATATACAAAAAAAAAAAA]
[-] EMBL BI306440 [CCCCCCCCAAAAAAGGGGGGGGGGGGGGGCCCCCCCCTCCGGGGCGCCCCCCCCCCCGGTTTTCCCCCCTTTTAATTTTCCCCGCTCTTTTATTTTTTGTTGGGAATTTGTGGGGGGGGGAAACCCTTTTTCCCCCCACGGGACCCCCTTTTTACCCCATGTTTTCGCATTTTTAAACCGCCCCCCCAAAAGGGGATTTTGCCCCCCCAAGGGCCCAAAAATTTCGGCCAAGGGGGGGTCCCCCCGCCCGGGGGGCCCTTCGGGCTGGCCCCGTGGGGTTTGGCGGGCGGACGACCCCGCAGTCGGGCCCCGTCGAGCAANTCTTGCTGGCCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGC TGTCCAACAC GGCCAGGG TCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATAT ]
[+] EMBL BE039995 [ GCGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGC TGTCCAACAC GGCCAGGG TCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAATCCGGGACGTAAATAAATTGACCATGCAATTAAGTGCGTGCGTATATACAAAAAAAAAAAA]
[+] EMBL AU183333 [ cngGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCCCCGTGATGC TGTCCAACACGGGCCAGGG TCGCNGGGATNAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAAaaaa ]
[+] EMBL AU184419 [ TGCTCGGCGGTGCACACCATCGGGCAGAGCCCCAGCTGCCTGTGCGCCGTGATGC TGTCCAACAC GGCCAGGG TCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAATCCGGGACGTAAATAAATTGACCATGCAATTAAaaa ]
[+] EMBL AU184823 [ CCTGTGNGCCGTGATGCATGTCCAACACGGGCCAGGGNTCGCCGGGATCAAGCCGGNGGTCGCCATCACCATCCCCAAGCGCTNCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTNAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAGTCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATAaaaa ]
[+] EMBL AU070809 [ GGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGNAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGNATAaaaa ]
consensusID : consensus_15790#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 431 fasta sequence
[CAGCTGCTGCTCGGCGGTGCACACCATCGGGCANAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAANACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGANAGTCCTTCATGTTCGGGGCTCTGCCNCTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU182670 [CAGCTGCTGCTCGGCGGTGCACACCATCGGGCANAGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAGCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTATCGATATCAANACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGANAGTCCTTCATGTTCGGGGCTCTGCCNCTTATATGGACTATGCACGTGGTGGTTGTGAAAATATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGACAAATTAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU183328 [ GGCGGTGCACACCATCGGGCAGAGCCCCANCTGCCTGTGCNCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAANCCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTACAAGTGCGGAGATTACACGCTGCCTTGACCCTTNAGGCCTTGAGGGGGACTGTGGCNCTTATCGATATCAANACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAANCGANAGTCCTTCATGTTCGGGGCTNTGCCNCTTATATGGACTATGCACGTGGTGGTTGTGAAAANATGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAAAAGCTTGCTTGCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15790#2 CCCCCCCCAAAAAAGGGGGGGGGGGGGGGCCCCCCCCTCCGGGGCGCCCCCCCCCCCGGT 60
consensus_15790#3 ------------------------------------------------------------
consensus_15790#1 ------------------------------------------------------------
consensus_15790#0 ------------------------------------------------------------
consensus_15790#2 TTTCCCCCCTTTTAATTTTCCCCGCTCTTTTATTTTTTGT--TGGGAATTTGTGGGGGGG 118
consensus_15790#3 ------------------------------------------------------------
consensus_15790#1 -----------CTGATCATACACACAAATTAAGTTGTGATCATCCGAGCAAAAGCAAAGC 49
consensus_15790#0 ------------------------------------------------------------
consensus_15790#2 GGAAACCCTTTTTCCCCCCACGGGACCCCCTTTTTACCC-CATGTTTTCGCATTTTTAAA 177
consensus_15790#3 ------------------------------------------------------------
consensus_15790#1 AAGAGAACGGTAGCTAGCTAGTTGACACAATGAGGGCGGGCAGGTTGGTGATCCTCGTGG 109
consensus_15790#0 ------------------------------------------------------------
consensus_15790#2 CCGCCCCCCCAAAAGGGGATTTTGCCCCCCCAAGGGC--CCAAAAATTTCGGCCAA---- 231
consensus_15790#3 ------------------------------------------------------------
consensus_15790#1 CGGTGGCGGTGGTGGTGGTGGTCGCCGGCGGCGGGGCGGCGGAGGGCGCCGGCGAGTGCG 169
consensus_15790#0 ----------------------------------GGCGGCGGAGGGCGCCGGCGAGTGCG 26
consensus_15790#2 GGGGGGGTCCCCCCGCCCGGGGGGCCCTTCGGGCTGGCCCCGTGGGGTTTGGCGGGCGGA 291
consensus_15790#3 ------------------------------------------------------------
consensus_15790#1 GGAGGGCGTCCGCCGACCGGGTGGCGCTGCGG-CTGGCGCCGTGCGTGTCGGCGG-CGGA 227
consensus_15790#0 GGAGGGCGTCCGCCGACCGGGTGGCGCTGCGG-CTGGCGCCGTGCGTGTCGGCGG-CGGA 84
consensus_15790#2 CGACCCCGCAGTCGGGCCCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAG 351
consensus_15790#3 --------------------------CAGCTGCTGCTCGGCGGTGCACACCATCGGGCAN 34
consensus_15790#1 CGACCC-GCAGTCGG-CGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAG 285
consensus_15790#0 CGACCC-GCAGTCGG-CGCCGTCGAGCAGCTGCTGCTCGGCGGTGCACACCATCGGGCAG 142
*********************************
consensus_15790#2 AGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG 411
consensus_15790#3 AGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG 94
consensus_15790#1 AGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG 345
consensus_15790#0 AGCCCCAGCTGCCTGTGCGCCGTGATGCTGTCCAACACGGCCAGGGTCGCCGGGATCAAG 202
************************************************************
consensus_15790#2 CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTAC 471
consensus_15790#3 CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTAC 154
consensus_15790#1 CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTAC 405
consensus_15790#0 CCGGAGGTCGCCATCACCATCCCCAAGCGCTGCAACATGGCCGACCGCCCCGTCGGCTAC 262
************************************************************
consensus_15790#2 AAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTA 531
consensus_15790#3 AAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTA 214
consensus_15790#1 AAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTA 465
consensus_15790#0 AAGTGCGGAGATTACACGCTGCCTTGACCCTTGAGGCCTTGAGGGGGACTGTGGCACTTA 322
************************************************************
consensus_15790#2 TCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAG 591
consensus_15790#3 TCGATATCAANACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGANAG 274
consensus_15790#1 TCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAG 525
consensus_15790#0 TCGATATCAAGACGTACGGATGCCGTGGGAGCTTAGGCTTTGTGTCGGAATAAGCGAGAG 382
********** ********************************************** **
consensus_15790#2 TCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATA 651
consensus_15790#3 TCCTTCATGTTCGGGGCTCTGCCNCTTATATGGACTATGCACGTGGTGGTTGTGAAAATA 334
consensus_15790#1 TCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATA 585
consensus_15790#0 TCCTTCATGTTCGGGGCTCTGCCACTTATATGGACTATGCACGTGGTGGTTGTGAAAATA 442
*********************** ************************************
consensus_15790#2 TGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAA----AAGC 707
consensus_15790#3 TGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAA----AAGC 390
consensus_15790#1 TGTATCCTGTGTTTCGTCTGAGTAAACTGTTAAATATAATAAGAATATACAA----AAGC 641
consensus_15790#0 TGTATCCTGTGTTTGCGCTGAGTAAACTGGTGAATGTGATTAGAATGAAAAAGAAGAAAA 502
************** ************ * *** * ** ***** * ** **
consensus_15790#2 TTGCTTGACAAATTAATCCGGGACGTAAATAAATT------GACCA-TGCAATTAAG--T 758
consensus_15790#3 TTGCTTGACAAATTAAAAAAAAAAAAAAAAAAAAA------AAAAA-A------------ 431
consensus_15790#1 TTGCTTGACAAAAAAA---AAAACTCATTTTTTTC------AACTAATGTAATTATC--T 690
consensus_15790#0 AGACCTGGAGGGGGGGCCCGGGACCAGATTGGGCCTATAGGGAGTAGTATAACTCGCCCT 562
* ** * * *
consensus_15790#2 GCGTGCGTATATACAAAAAAAAAAAA---------------------------------- 784
consensus_15790#3 ------------------------------------------------------------
consensus_15790#1 AGAGGTGGGCCCGTGTCCAATTTTTCCTTTATTGATATTATTAACCCCGCTCACTTGCCG 750
consensus_15790#0 CACTGAGTAAGAGTTATCAATCAGGGGGATGGGGTAATCTTTGTAGTTTCTCGCCATGTG 622
consensus_15790#2 ------------------------------------------------------------
consensus_15790#3 ------------------------------------------------------------
consensus_15790#1 TTTTTAACAACGATGAATTGGAAAACTCTTGTTTACCAC--------------------- 789
consensus_15790#0 CGCCTGCGCGAGGTGGGCTGGGAGATGATGTGATAAAAGCGGGCTGTGGGTGGTGGGGTT 682
consensus_15790#2 ------------------------------------------------------------
consensus_15790#3 ------------------------------------------------------------
consensus_15790#1 ------------------------------------------------------------
consensus_15790#0 GTTTGTATGGGTAATTGCTACATTTACGATTGTACTGCCTCATTAAATGCTCCTGCCGTT 742
consensus_15790#2 ------------------------------------------------------------
consensus_15790#3 ------------------------------------------------------------
consensus_15790#1 ------------------------------------------------------------
consensus_15790#0 TTTGGTTATTTAGTTACAACAAGAGATTTCGGCTCGGGTGGGAGGTGGTGGGAGTGGGAG 802
consensus_15790#2 ------------------------------------------------------------
consensus_15790#3 ------------------------------------------------------------
consensus_15790#1 ------------------------------------------------------------
consensus_15790#0 GGGTTTTTGGGGGTGTGGTTAGTCGGGTAGTGTGGGATGATTGGATGATCTTATGGTTGT 862
consensus_15790#2 ------------------------------------------------------------
consensus_15790#3 ------------------------------------------------------------
consensus_15790#1 ------------------------------------------------------------
consensus_15790#0 GAGTTGTGTGATCTTGGTGGGCGTTGGCTCTCGCTGGTCCTGGTGGGCGCGGCCGGGTGC 922
consensus_15790#2 --------------------------
consensus_15790#3 --------------------------
consensus_15790#1 --------------------------
consensus_15790#0 TGGTGATTGTTTTGCCGGGGATGTTG 948
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||