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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15792#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1629 fasta sequence
[CCTAGGCGCCCCTCGACCGCGCCGCCTCCTCACCGCCCTCGACCACAGTCGCCCCGCGCGCCCTCGACCGCCGCCGCCTCCTCGCCGCCCCGCGCCGCCTCCTCTCTGCCCTCAACCGCCGACGCCCCGCGCCGCCTCCTCGCCGCACCCAACTCCGGTTGCGCCGTAGTGTCCACCGCCGCCGCCCGCCGCATCGTCGTCCTCCCCATCACCCGCCACCAACGCCTACTCCGTCCACCCGCCACCGACACCGAATCCTCCGCCCACCCGCAACCGCCGCCAACGCCCCCGCCGCTGAGTCAGCTCCAGATCCGCTGTCGGGCTGACTCCTCCTCCTCCTCCCTGTCGCGGACGCCGCCGCCGCCGATGCCTACTACTCCGCTCCGAGCCCCATCTAGCGAACAGAGCAGGGATGGGAGGGGCGCCGTCGTCCTACTGCATCCTTGGTGTTGGACTTGATAAAGCTTGGAGATCATCTCAGTGAACGGGAGGATGCTGATCTCTATAGGATTGGGATTACTGGTGAATCACTTGGAGATAATCAAGAACTATCATGATCTTTTGTGATCAAAAGCCCATAGTCCACTACTATGTTTTACTACTTCCAGATTAATGGAGTGGTATTGTGGTTTCTCAGCCATGGCAATGTGGCGAGCGTCGTCGTCGTCAGGTCCTCCACTGCTGTTCAGTCCGCCGCCACCTACGCCGGTCCTCTCGCTTCCAGGTGACGAACTCTGGTTGATGGCATCGCACTGCTGGTACCAGGTGATTCATTTTGCTGCCTTCAATTGTGAAATGAGAAATACCTGTAAGTGAAGGCCTAAGCTCAAGGAATAATTTGTTCTTTTTGAAAACAAAAAGCTCATAGGTAGAATGTTCACCACCAGGCAAGTCAAGGAGCGAAGTATGGGGACAGTGTGTGCTCGGAAGATCTTTGCCAGCTTGTGTTTTGACTTCTGAAGGCATGCACAGATGTGAAGATATGAACTTCTAGGGGAGCTTTATAAACCGAGAATAGTTAAGGCAATACTTGATTTACTTTGGACTGCAAATTACTTGATCGGATAATCAATATGTGGCGAGCTTTACACAGATTGGCTTTGATGAATCATTAAAGGGCTATCGGCGGGGTGAATATCTAGCTTTGAACATGATTTGTTTTGATTCCTGTTGCAACGCACGGGCACACAACTAGTAAGTTGTAAATTCATCTTGCAAGCAGCTGGGAGAAATGTTTTGAACAATGAATGGAATGCAAAATCTTTCTAATACCTGTAAACTGAATGAAATGGCTTATGAATAACTGAATTCCTGTAAACGCAATGGCTTCTAGATCCCAGTAGTATTCAGAGTCTCAGACAAGAACATGATGTGAGAGTAATGTCAGCTTTGCCCAAGGATGCGAAGAACTCACGGAGCAGCAAACTCAAGCGATGACACACACGCACGAGCAACAAATTGTAGTGGACACACACAATAGATCTCTGGAGATGAACACACAGAAGTGCACACACACACATAGTTGTTAAATTCAGACCGGTGATCGAAACAGTGAGTCTACCTGTTCAAAGGCTCCCTGGTCCAACCGCTTGTTCACCGGTTTAACCGTCGGTTCAATAAATAACTACA]
[+] EMBL AK060319 [CCTAGGCGCCCCTCGACCGCGCCGCCTCCTCACCGCCCTCGACCACAGTCGCCCCGCGCGCCCTCGACCGCCGCCGCCTCCTCGCCGCCCCGCGCCGCCTCCTCTCTGCCCTCAACCGCCGACGCCCCGCGCCGCCTCCTCGCCGCACCCAACTCCGGTTGCGCCGTAGTGTCCACCGCCGCCGCCCGCCGCATCGTCGTCCTCCCCATCACCCGCCACCAACGCCTACTCCGTCCACCCGCCACCGACACCGAATCCTCCGCCCACCCGCAACCGCCGCCAACGCCCCCGCCGCTGAGTCAGCTCCAGATCCGCTGTCGGGCTGACTCCTCCTCCTCCTCCCTGTCGCGGACGCCGCCGCCGCCGATGCCTACTACTCCGCTCCGAGCCCCATCTAGCGAACAGAGCAGGGATGGGAGGGGCGCCGTCGTCCTACTGCATCCTTGGTGTTGGACTTGATAAAGCTTGGAGATCATCTCAGTGAACGGGAGGATGCTGATCTCTATAGGATTGGGATTACTGGTGAATCACTTGGAGATAATCAAGAACTATCATGATCTTTTGTGATCAAAAGCCCATAGTCCACTACTATGTTTTACTACTTCCAGATTAATGGAGTGGTATTGTGGTTTCTCAGCCATGGCAATGTGGCGAGCGTCGTCGTCGTCAGGTCCTCCACTGCTGTTCAGTCCGCCGCCACCTACGCCGGTCCTCTCGCTTCCAGGTGACGAACTCTGGTTGATGGCATCGCACTGCTGGTACCAGGTGATTCATTTTGCTGCCTTCAATTGTGAAATGAGAAATACCTGTAAGTGAAGGCCTAAGCTCAAGGAATAATTTGTTCTTTTTGAAAACAAAAAGCTCATAGGTAGAATGTTCACCACCAGGCAAGTCAAGGAGCGAAGTATGGGGACAGTGTGTGCTCGGAAGATCTTTGCCAGCTTGTGTTTTGACTTCTGAAGGCATGCACAGATGTGAAGATATGAACTTCTAGGGGAGCTTTATAAACCGAGAATAGTTAAGGCAATACTTGATTTACTTTGGACTGCAAATTACTTGATCGGATAATCAATATGTGGCGAGCTTTACACAGATTGGCTTTGATGAATCATTAAAGGGCTATCGGCGGGGTGAATATCTAGCTTTGAACATGATTTGTTTTGATTCCTGTTGCAACGCACGGGCACACAACTAGTAAGTTGTAAATTCATCTTGCAAGCAGCTGGGAGAAATGTTTTGAACAATGAATGGAATGCAAAATCTTTCTAATACCTGTAAACTGAATGAAATGGCTTATGAATAACTGAATTCCTGTAAACGCAATGGCTTCTAGATCCCAGTAGTATTCAGAGTCTCAGACAAGAACATGATGTGAGAGTAATGTCAGCTTTGCCCAAGGATGCGAAGAACTCACGGAGCAGCAAACTCAAGCGATGACACACACGCACGAGCAACAAATTGTAGTGGACACACACAATAGATCTCTGGAGATGAACACACAGAAGTGCACACACACACATAGTTGTTAAATTCAGACCGGTGATCGAAACAGTGAGTCTACCTGTTCAAAGGCTCCCTGGTCCAACCGCTTGTTCACCGGTTTAACCGTCGGTTCAATAAATAACTACA]
[+] EMBL AU064504 [ CTCGCCGCACCCAACTCCGGTTGCGCCGTAGTGTCCACCGCCGCCGCCCGCCGCATCGTCGTCCTCCCCATCACCCGCCACCAACGCCTACTCCGTCCACCCGCCACCGACACCGAATCCTCCGCCCACCCGCAACCGCCGCCAACGGCCCCGCCGCTGAGTCAGCTCCAGATCCGCTGTCGGGCTGACTCCTCCTCCTNCTNCCTGTCGCGGACGNCGNCGNCGCCGATGCCTACTACTCCGCTCCGAGCCCCATCTAGCGAACAGAGCAGGGATGGGAGGGGCGCCGTCGTNCTACTGCATCCTTGGTGTTGGACTTGATAAAGNTTGGAGATCATCTNAGTGAACGGGAGGATGCTGATCTCTATAGGA TNGGATTACTGGTGAAT AATTGGAGATAATAAGGANCTATNATGATCTTTTGTGAT ]
[+] EMBL AU094785 [ GTGAANTGAGAAATACCTGTAAGTGAAGGCCTAAGCTCAAGGAATAATTTGTTCTTTTTGAAAACAAAAAGCTCATAGGTAGAATGTTCACCACCAGGCAAGTCAAGGAGCGAAGTATGGGGACAGTGTGTGCTCGGAAGATCTTTGCCAGCTTGTGTTTTGACTTCTGAAGGCATGCACAGATGTGAAGATATGAACTTCTAGGGGAGCTTTATAAACCGAGAATAGTTAAGGCAATACTTGATTTACTTTGGACTGCAAATTACTTGATCGGATAATCAATATGTGGCGAGCTTTACACAGATTGGCTTTGATGAATCATTAAAGGGCTATCGGCGGGGTGAATATCTAGCTTTGAACATGATTTGTTTTGATTCCTGTTGCAACGCACGGGCACACAACTAGTAAGTTGTAAATTCATCTTGCAAGCAGCTGGGAGAAATGTTTTGAACAATGAATGGAATGCAAAATCTTTCTAATAaaaaaa ]
[+] EMBL AA751369 [ GATCTTTGCCAGCTTGTGTTTTGACTTCTGAAGGCATGCACAGATGTGAAGATATGAACTTCTAGGGGAGCTTTATAAACCGAGAATAGTTAAGGCAATACTTGATTTACTTTGGACTGCAAATTACTTGATCGGATAATCAATATGTGGCCAGCTTTACACAGATTGGCTTTGATGAATCATTAAAG ]
consensusID : consensus_15792#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1390 fasta sequence
[AAGCCAAACAACATCCGCGGCGCCACCGCCGCA-GCCGGCGGAGGGAGCAAAATGGAGGCCGCCGCCGCCGTCGCCCCCTCCGGTCTCCGGGCGAGCTTCCTCGACGTCCTCCTCAGCCGCCGTCGTAACCTCCAAGTGGCTCTCACGGTGGAGCCCGGGAGCCCGGTGAAGCGCCCGCTGTACCAGGGGAGGCCGCCGATGGGGCGGAGCGAGGCCATGGAATCGTGCCCGAGGAAAGGGGTGGTGAACTCCAAGGAGAAGTTGGTTGAAGAAAATTTCTACCTGATTACTGAGTCAGGTGAACAAGGGCGTGTACCTGTGCTTCTTCTGAAACTTAACGATACAACCCCTAAAAGAAAACCAGTTATTGTATTCCT-GCACAGCTCATATAAATGCAAGGAATGGCTGCGTCCACTGCTTGAGGCATATGCCTCCAGAGGCTACATTTCTGTTGCCATCGATTCTCGCTATCACGGTGAAAGGGCCAACAATAACAGCACTTACATAGATGCACTAAAATCAGCTTGG-AGGAATGGGGATGCAATG-CCTTT-CATTCTTGACA-CGGTGTGGGACTT-GATAAAGCTTGGAGATCAT-CTCAGTGAACGGGAGGATGTTGATCCCTGTAGGATTGGGATTACCGGTGAATCACTTGGAGGAATGCATGCATGGTTTGCTGCTGTTGTGGATACACGGTATAGTGTTGTTGTTCCTATAATTGGTG-TTCAGGGATTTCGATGGGCCATAGA-TAATAACAAGTGG-CAAGCTAGAGTTGAT-AGTAT-CAAACCTCTATTTGAA-GA-GGCAAGAATTGATCTAGGGAAGAGTGAAATAGATACAGAAGTT--GTAGAAAAGGTG-TGGGA-CAA-GA-TAGC--ACCT-GGT-CTGGACTCAC-A-ATTTGATGCGCCCTTTTCACTCCCTGTAATTG-CACCAC-GGCCACTTCTCCTC-CTGAAT-G-GTGCTGAAGA-CCCTC-GATGCCCAGTACT-TGGTTTACAGGAA-CCTG-TTTCCAGAGC-TGCTAAGGC-TTATGAA-GAAGTTGGTTCTGC-AGATAA-GTTCATGTTCA-TTGCAGAGCCA-GGAATTGGCCATCA-A-AT-GAC-AGCGAACATGGTGAAGGAAGC-AAGTGATTGGT-TTGATCGCTTCCTTTAGAGGGTTAT-GTATAT-GTTCCGA-ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTC-AGTTTATAATTGCTTATATTGAATATATGACTGGAATCGATTCAATTTCAAAACCATCTAATTTGTAGTCTACATACCCTAATAATTGCCAAAGGAGAAACATTTTGTAGCATGTAGGCATTTCACAGTTTGAGAATACAGAAGTTGGGAGGAAGATTATTTAAAAAAAAAGGTTCTGATGAGAAAAA]
[+] EMBL AK068888 [AAGCCAAACAACATCCGCGGCGCCACCGCCGCA GCCGGCGGAGGGAGCAAAATGGAGGCCGCCGCCGCCGTCGCCCCCTCCGGTCTCCGGGCGAGCTTCCTCGACGTCCTCCTCAGCCGCCGTCGTAACCTCCAAGTGGCTCTCACGGTGGAGCCCGGGAGCCCGGTGAAGCGCCCGCTGTACCAGGGGAGGCCGCCGATGGGGCGGAGCGAGGCCATGGAATCGTGCCCGAGGAAAGGGGTGGTGAACTCCAAGGAGAAGTTGGTTGAAGAAAATTTCTACCTGATTACTGAGTCAGGTGAACAAGGGCGTGTACCTGTGCTTCTTCTGAAACTTAACGATACAACCCCTAAAAGAAAACCAGTTATTGTATTCCT GCACAGCTCATATAAATGCAAGGAATGGCTGCGTCCACTGCTTGAGGCATATGCCTCCAGAGGCTACATTTCTGTTGCCATCGATTCTCGCTATCACGGTGAAAGGGCCAACAATAACAGCACTTACATAGATGCACTAAAATCAGCTTGG AGGAATGGGGATGCAATG CCTTT CATTCTTGACA CGGTGTGGGACTT GATAAAGCTTGGAGATCAT CTCAGTGAACGGGAGGATGTTGATCCCTGTAGGATTGGGATTACCGGTGAATCACTTGGAGGAATGCATGCATGGTTTGCTGCTGTTGTGGATACACGGTATAGTGTTGTTGTTCCTATAATTGGTG TTCAGGGATTTCGATGGGCCATAGA TAATAACAAGTGG CAAGCTAGAGTTGAT AGTAT CAAACCTCTATTTGAA GA GGCAAGAATTGATCTAGGGAAGAGTGAAATAGATACAGAAGTT GTAGAAAAGGTG TGGGA CAA GA TAGC ACCT GGT CTGGACTCAC A ATTTGATGCGCCCTTTTCACTCCCTGTAATTG CACCAC GGCCACTTCTCCTC CTGAAT G GTGCTGAAGA CCCTC GATGCCCAGTACT TGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCA TTGCAGAGCCA GGAATTGGCCATCA A AT GAC AGCGAACATGGTGAAGGAAGC AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTTCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTC AGTTTATAATT ]
[+] EMBL C26825 [ CATCCGCGGCGCCACCGCCGCANGCCGGCGNAGGGAGCAAAATGGAGGCCGCCGNCGCCGTCGCCCCNTCCGGTCTCCGGGCGAGCTTCCTCGACGTCCTCCTCAGCCGCCGTCGTAACCTCCAAGTGGCTCTCACGGTGGAGCCCGGGAGNCCGGTGAAGCGCCCNNTGTACCANGGGAGGCCGCCGATGGGGCGGAGCGAGGCCATGGAATCGTGCCCTAGGAAAGGGGTNGTGAACTTCAAGGAGAAGTTNGTTTAAGAAAATTTNTA ]
[+] EMBL CB673044 [ CCGCGGCGCCTTCGCCGCA GCCGGCGGAGGGAGCAAAATGGAGGCCGCCGCCGCCGTCGCCCCCTCCGGTCTCCGGGCGAGCTTCCTCGACGTCCTCCTCAGCCGCCGTCGTAACCTCCAAGTGGCTCTCACGGTGGAGCCCGGGAGCCCGGTGAAGCGCCCGCTGTACCAGGGGAGGCCGCCGATGGGGCGGAGCGAGGCCATGGAATCGTGCCCGAGGAAAGGGGTGGTGAACTCCAAGGAGAAGTTGGTTGAAGAAAATTTCTACCTGATTACTGAGTCACGTGAACAAGGGCGTGTACCTGTGCTTCTTCTGAAACTTAACGATACAACCCCTAAAAGAAAACCAGTTATTGTATTCCT GCACAGCTCATATAAATGCAAGGAATGGCTGCGTCCACTGCTTGAGGCATATGCCTCCAGAGGCTACATTTCTGTTGCCATCGATTCTCGCTATCACGGTGAAAGGGCCAACAATAACAGCACTTACATAGATGCACTAAAATCAGCTTGG AGGAATGGGGATGCAATG CCTTT CATTCTTGACA CGGTGTGGGACTT GATAAAGCTTGGAGATCAT CTCAGTGAACGGGAGGATGTTGATCCCTGTAGGATTGGGATTACCGGTGAATCACTTGGAGGAATGCATGCATGGTTTGCTGCTGTTGTGGATACACGGTATAGTGTTG ]
[+] EMBL AU068518 [ GGTGAAGCGCCCGCTGTACCAGGGGAGGCCGCCGATGGGGCGGA CGAGGCCATGGAATCGTGCCCGAGGAAAGGGGTGGTGAACTCCAAGGANAAGTTGGTTGAAGAAAATTTCTACCTGATTACTGAGTCAGGTGAACAANGGCGTGTACCTGTGCTTCTTCTGAAACTTAACGATACAACCCCTAAAAGAAAACCAGTTATTGTATTCCTGGCACAGCTCATA ]
[+] EMBL C99201 [ cCTTGGAAGGAATGGGGATGCAATGCCCTTTCCATTCTTGACACCGGTTTGGGACTTNGATAAAGCTTGGAGATCCTCCTCAGTGAACGGGAGGATNTTGATCCCTGTAGGATTGGGATTNCCGGTGAATCACTTGGAGGAATGCATGCATGGTTTGCTGCTGTTGTGGATACACGGTATAGTGTTGTTGTTCCTATAATTGGTGTTTCAGGGATTTCGATGGGCCATAGATTAATNACAAGTGGNCAAGCTAGAGTTGAT AGTAT CAAACCTCTATTTGAAGGAGGGCAAAATTTGATCTAGGGAAGAGTGAAATAGATACAGAAGTT GTAGAAAAGGTG TGGGA CAA GA TAGC ACCT GGT CTGGACTCAC A ATTTGATGCG CCTTTTCACTCCCTGTAATTG CACCAC GGCCACTTCTCCTC CTGAAT G GTGCTGAAGA CCCTC GATGCCCAGTACT TGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCA TTGCAGAGCCA GGAATTGGCCATCA A AT GAC AGCGAACATGGTGAAGGAAGC AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTTCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTC Aaaaa ]
[+] EMBL AU065958 [ AACGGGAGGATGTTGATCCCTGTAGGATTGGGATTACCGGTGAATCACTTGGAGGAATGCATGCATGGTTTGCTGCTGTTGTGGATACACGGTATAGTGTTGTTGTTCCTATAATTGGTG TTCAGGGATTTCGATGGGCCATAGA TAATAACAAGTGG CAAGCTAGAGTTGAT AGTAT CAAACCTCTATTTGAA GA GGCAAGAATTGATCTAGGGAAGAGTGAAATAGATACAGAAGTT GTAGAAAAGGTG TGGG CAA GA TAGC ACCT GGT CTGGACTCAC A ATTTGATGCG CCTTTTCACTCCCTGTAATTG CACCAC GGCCACTTCTCCTC CTGAAT G GTCCTGAAGA CCTC GATG CCAGTACT TGGTT CAGG A CCTG TTCCAGA C T CTA GC TTATG A GNAGTNG TCT C AG TAA G TCATG TCA TT C AGNCA GG ATTG CATC A AT G C A NG ACATGGTa ]
[+] EMBL AU065921 [ AACGGGAGGATGTTGATCCCTGTAGGATTGGGATTACCGGTGAATCACTTGGAGGAATGCATGCATGGTTTGCTGCTGTTGTGGATACACGGTATAGTGTTGTTGTTCCTATAATTGGTG TTCAGGGATTTCGATGGGCCATAGA TAATAACAAGTGG CAAGCTAGAGTTGAT AGTAT CAAACCTCTATTTGAA GA GGCAAGAATTGATCTAGGGAAGAGTGAAATAGATACAGAAGTT GTAGAAAAGGTG TGGGA CAA GA TAGC ACCT GGT CTGGACTCAC A ATTTGATGCGCCCTTTTCACTCCCTGTAATTG CACCAC GGCCACTTCTCCTC CTGAATGG GTGCTGAAGA CCCTC GATGCCCAGTACT TGGTTTACAGGAACCCTGTTTTCCAGAGC TGCTAAGGC TTATGAANGAAGTTGGTTCTGC AGATAA GGTCATGTTCA TTNCAGACCCA GGAATTGG ]
[+] EMBL OSC8101 [ ACGGGAGGATGTTGATCCCTGTAGGATTGGGATTACCGGTGAATCACTTGGAGGAATGCATGCATGGTTTGCTGCTGTTGTGGATACACGGTATAGTGTTGTTGTTCCTATAATTGGTG TTCAGGGATTTCGATGGGCCATAGA TAATAACAAGTGG CAAGCTAGAGTTGAT AGTAT CAAACCTCTATTTGAA GA GGCAAGAATTGATCTAGGGAAGAGTGAAATAGATACAGAAGTT GTAGAAAAGGTG TGGGA CAA GA TAGC ACCT GGT CTGGACTCAC A ATTTGATGCGNCCTTTTCACTCCCTGTAATTG CACCAC GGCCACTTCTCCTC CTGAAT G GTGCTGAAGA CCCTC GATGCCCAGTACT TGGGTTACAGGGA CCTG TTTCCAGAGCTTGCTAAGGCTTTATGAA GGAGTTGGGTCTGC AGATAAGGTTCATGGTCA TTTCAGNCCCA GGGATTGGCCATCA A ]
[-] EMBL CB673045 [ AGGAATGCATGCATGGTTTGCTGCTGTTGTGGATACACGGTATAGTGTTGTTGTTCCTATAATTGGTG TTCAGGGATTTCGATGGGCCATAGA TAATAACAAGTGG CAAGCTAGAGTTGAT AGTAT CAAACCTCTATTTGAA GA GGCAAGAATTGATCTAGGGAAGAGTGAAATAGATACAGAAGTT GTAGAAAAGGTG TGGGA CAA GA TAGC ACCT GGT CTGGACTCAC A ATTTGATGCGCCCTTTTCACTCCCTGTAATTG CACCAC GGCCACTTCTCCTC CTGAAT G GTGCTGAAGA CCCTC GATGCCCAGTACT TGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCA TTGCAGAGCCA GGAATTGGCCATCA A AT GAC AGCGAACATGGTGAAGGAAGC AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTTCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTC AGTTTATAATTGCTTATATTGAATATATGACTGGAATCGATTCAATTTCATCACCATCTAATTTGTAGTCTACATACCCTAATAATTGCCAAAGGAGAAACATTTTGTAGCATGTAGGCATTTCACAGTTTGAGAATACAGAA ]
[+] EMBL C27381 [ GTGTTGTTGTTCCTATAATTGGTG TTCAGGGATTTCGATGGGCCATAGA TAATAACAAGTGG CAAGCTAGAGTTGAT AGTAT CAAACCTCTATTTGAA GA GGCAAGAATTGATCTAGGGAAGAGTGAAATAGATACAGAAGTT GTAGAAAAGGTG TGGGA CAA GA TAGC ACCT GGT CTGGACTCAC A ATTTGATGCGCCCTTTTCACTCCCTGTAATTG CACCAC GGCCACTTCTCCTC CTGAAT G GTGCTGAAGA CCCTC GATGCCCAGTACT TGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCATTTGCAGACCCAGGGAATTGGCCATCA A NT GAC AGCGAACATGGTGANGGAAGCAAAGTNATT ]
[+] EMBL AU108882 [ TTCAGGGATTTCNATGGGCCATAGA TAATNACACGTGG CAAGCTNGAGTTGATAAGTNTCCAAACCTCTATTTGAA GA GGCAAGAATTGATCTAGGGAAGAGTGNAATAGATACAGAAGTT GTAGAAAAGGTG TGGGA CAA GA TAGC ACCT GGT CTGGACTCAC A ATTTGATGCGCCCTTTTCACTCCCTGTAATTG CACCAC GGCCACTTCTCCTC CTGAAT G GTGCTGAAGA CCCTC GATGCCCAGTACT TGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCA TTGCAGAGCCA GGAATTGGCCATCA A AT GAC AGCGAACATGGTGAAGGAAGC AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTTCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTC AGTTTATAATTGCTTATATTGAATATATGACTGGAATCGATTCAATTTCAAAAaaaa ]
[+] EMBL AU198141 [ AGATACAGAAGTT GTAGAAAAGGTG TGGGA CAA GA TAGC ACCT GGT CTGGACTCAC A ATTTGATGCGCCCTTTTCACTCCCTGTAATTG CACCAC GGCCACTTCTCCTC CTGAAT G GTGCTGAAGA CCCTC GATGCCCAGTACT TGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCA TTGCAGAGCCA GGAATTGGCCATCA A AT GAC AGCGAACATGGTGAAGGAAGC AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTTCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTC AGTTTATAATTGCTTATATTGAATATATGACTGGAATCGATTCAATTTCAAAAaa ]
[+] EMBL AU096834 [ cgaAAGTTCNTTAGAAAAGGTGTTGGGANCAATGATTAGCCAACCTCGGTCCTGGACTCACAA ATTTGATGCGCCCTTTTCACTCCCTGTAATTG CACCAC GGCCACTTNTCCTC CTGAAT G GTGCTGAAGANCCCTC GATGCCCAGTACT TGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCA TTGCAGAGCCA GGAATTGGCCNTCANACATCGAC AGCGAACATGGTGAAGGAAGC AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTTCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTC AGTTTATAATTGCTTATATTGAATATATGACTGGAATCGATTCAATTTCAAA ]
[+] EMBL BI809058 [ AGCA ACCT GGT CTGGACTCAC ACATTTGATGCGCCCTTTTCACTCCCTGTAATTG CACCAC GACCACTTCTCCTC CTGAAT G GTGCTGAAGA CCCTC GATGCCCAGTACT TGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCA TTGCAGAGCCA GGAATTGGCCATCA A AT GAC CGCGAACATGGTGAAGGAA C AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTTCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAAC AGTTGTCTC AGTTTATAATTGCTTATATTGAATATATCCCTGGAATCGATTC ATTTAAAAAaa ]
[+] EMBL C96941 [ ATGCNCCTTTTTCACNCCCTGTAATTGCCACCAC GGCCANTTCTCCTC CTGAAT G GTGCTGAAGA CCCTC GATCCCCAGTACT TGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCA TTGCAGAGCCA GGAATTGGCCATCA A AT GAC AGCGAACATGGTGAAGGAAGC AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTTCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTC AGTTTATAATTGCTTATATTGAATATATGACTGGAATCGATTCAATTTCATCACCATCTAATTTGTAGTCTACATACCCTAATAATTNCCAAAGGAGAAACATTTTGTAGCATGTAGGCATTTCACAGTTTGAGAATACAGAAGTTGGGAGGAAGATTATTTATCTGTCAAGGTTCTGATGAGAAAAA]
[+] EMBL AU096756 [ cCCNTGTAATTG CACCACTGGCCACTTCTCCTCACTGAAT GNGTGCTGAAGA CCCTCAGATGCCCAGTACTNTGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCA TTGCAGAGCCA GGAATTGGCCATCA A AT GAC AGCGAACATGGTGAAGGAAGC AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTTCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTC AGTTTATAATTGCTTATATTGAATATATGACTGGAATCGATTCAATTTCAAAA ]
[+] EMBL AU068517 [ AT G GTGCTGAAGA CCCTC GATGCCCAGTACT TGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCA TTGCAGAGCCA GGAATTGGCCATCA A AT GAC AGCGNNCATGGTGAAGGAAGC AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTNCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTC AGTTTATAATTGCTTATATTGAATATATGACTGGAATCGATTCAATTTCATCACCATCTAATTTGTAGTCTACATACCCTAATAATTGCCAAAGGAGAAACATTTTGTAGCATGTAGGCATTTCACAGTTTGAGAATACAGAAGTTGGGAGGAAGATTAAAAAAAAAAAA ]
[+] EMBL AU197606 [ T G GTGCTGAAGA CCCTC GATGCCCAGTACT TGGTTTACAGGAA CCTG TTTCCAGAGC TGCTAAGGC TTATGAA GAAGTTGGTTCTGC AGATAA GTTCATGTTCA TTGCAGAGCCA GGAATTGGCCATCA A AT GAC AGCGAACATGGTGAAGGAAGC AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTTCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTNTACAACAAGTTGTCTC AGTTTATAATTGCTTATATTGAATATATGACTGGAATCGATTCAATTTCATCACCATCTAATTTGTAGTCTACATACCCTAATAATTGCCAAAGGAGAAACATTTTGTAGCATGTAGGCATTTCACAGTTTGAGAATACAGAAGTTGGGAGGAAGATTATTTAAAAAAA ]
[+] EMBL BI810314 [ GCTAAGGC TTATGAA GAAGTTGGTTCTGCAAGATAA GTTCATGTTCA TTGCAGAGCCA GGAATT GCCATCA A AT GACAAGCGAACATGGTGAAGGAAGC AAGTGATTGGTGTTGATCGCTTCCTTTAGAGGGTTATGGTATATGGTTCCGATATACTCTTAGGATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTCAAGTTTATAATTGCTTATATGGAATATATGACTGGAA ]
[+] EMBL CB683862 [ GC AGCTTA TATCATGTTCA TTGCAGAGCCA GGAATTGGCCATCA A AT GAC AGCGAACATGGTGAAGGAAGC AAGTGATTGGT TTGATCGCTTCCTTTAGAGGGTTAT GTATAT GTTCCGA ATACTCTTATTATACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTC AGTTTATAATTGCTTATATTGAATATATGACTGGAATCG ]
consensusID : consensus_15792#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence
[CCNGCCNGGNACGTGNGNANGCAAAATGGAGGCCGCCGCGCCGTCGCCCCCTCCGGTCTCCGGCGAGCTTCCTCGACGTCCTCCTCAGCCGCCGTCGTAACCTCCAAGTGGCTCTCACGGTGGAGCCCGGGAGCCCGGTGAAGCGCCCGCTGTACCAGGGGAGGCCGCCGATGGGGANGCGAAGGCCATGGAATCGTGCCCGAGGAAAGGGGTGGTGAACTCCAAGGAGAAGTTGGTTNAAGAAAATTTCTTACCTGATTACTTGAGTCAGGTGAACAAGGGGCGTGTACCTGTTCTTTCTTCTTGAAACTTTAACGATACAACCCCTAAAAGAAAACCAGTTATTTTATTTCCTTCACAGTNATATTAATTCAAGGATTGCTTCGTCACTTTT]
[+] EMBL OSC441 [CCNGCCNGGNACGTGNGNANGCAAAATGGAGGCCGCCGCGCCGTCGCCCCCTCCGGTCTCCGGCGAGCTTCCTCGACGTCCTCCTCAGCCGCCGTCGTAACCTCCAAGTGGCTCTCACGGTGGAGCCCGGGAGCCCGGTGAAGCGCCCGCTGTACCAGGGGAGGCCGCCGATGGGGANGCGAAGGCCATGGAATCGTGCCCGAGGAAAGGGGTGGTGAACTCCAAGGAGAAGTTGGTTNAAGAAAATTTCTTACCTGATTACTTGAGTCAGGTGAACAAGGGGCGTGTACCTGTTCTTTCTTCTTGAAACTTTAACGATACAACCCCTAAAAGAAAACCAGTTATTTTATTTCCTTCACAGTNATATTAATTCAAGGATTGCTTCGTCACTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15792#1 ------------------------------------------------------------
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 CCTAGGCGCCCCTCGACCGCGCCGCCTCCTCACCGCCCTCGACCACAGTCGCCCCGCGCG 60
consensus_15792#1 ------------------------------------------------------------
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 CCCTCGACCGCCGCCGCCTCCTCGCCGCCCCGCGCCGCCTCCTCTCTGCCCTCAACCGCC 120
consensus_15792#1 ------------------------------------------------------------
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 GACGCCCCGCGCCGCCTCCTCGCCGCACCCAACTCCGGTTGCGCCGTAGTGTCCACCGCC 180
consensus_15792#1 ---------------------------------AAGCCAAACAACATCCGCGGCGCCACC 27
consensus_15792#2 ---------------------------------------------------------CCN 3
consensus_15792#0 GCCGCCCGCCGCATCGTCGTCCTCCCCATCACCCGCCACCAACGCCTACTCCGTCCACCC 240
*
consensus_15792#1 GCCGCAGCCGGCGGAGGGAGCAAAATGGAGGCCGCCGCCGCCGTCGCCCCCTCCGGTC-- 85
consensus_15792#2 GCCNGGNACGT--GNGNANGCAAAATGGAGGCCGCCGC-GCCGTCGCCCCCTCCGGTC-- 58
consensus_15792#0 GCCACCGACACC-GAATCCTCCGCCCACCCGCAACCGCCGCCAACGCCCCCGCCGCTGAG 299
*** * * * ** **** *** ******* *** *
consensus_15792#1 TCCGGGCGAGCTTCCTCGACGTCCTC-CTCAGCCGCCGTCGTAACCTCCAAGTGGCTCTC 144
consensus_15792#2 TCCGG-CGAGCTTCCTCGACGTCCTC-CTCAGCCGCCGTCGTAACCTCCAAGTGGCTCTC 116
consensus_15792#0 TCAGCTCCAGATCCGCTGTCGGGCTGACTCCTCCTCCTCCTCCCTGTCGCGGACGCCGCC 359
** * * ** * * * ** ** *** ** ** * ** * ** *
consensus_15792#1 ACGGTGGAGCCCGGGAGCCCGGTGAAGCGCCCGCTGTACCAGGGGAGGCCGCCGATGGGG 204
consensus_15792#2 ACGGTGGAGCCCGGGAGCCCGGTGAAGCGCCCGCTGTACCAGGGGAGGCCGCCGATGGGG 176
consensus_15792#0 GCCGCCGATGCCTACTACTCCGCTCCGAGCCCCATCTAGCGAACAGAGCAG--GGATGGG 417
* * ** ** * * * * **** * ** * ** * * ***
consensus_15792#1 CGGAGCGAGGCCATGGAATCGTGCCCGAGGAAAGGGG--TGGTGAACTCCAAGGAGAAGT 262
consensus_15792#2 ANGCG-AAGGCCATGGAATCGTGCCCGAGGAAAGGGG--TGGTGAACTCCAAGGAGAAGT 233
consensus_15792#0 AGGGGCGCCGTCGTCCTACTGCATCCTTGGTGTTGGACTTGATAAAGCTTGGAGATCATC 477
* * * * * * * ** ** ** ** * ** ** *
consensus_15792#1 TGGTTGAA--GAAAATTTCT-ACCTGATTA---CT-GAGTCA--GGTGAACAAGGG-CGT 312
consensus_15792#2 TGGTTNAA--GAAAATTTCTTACCTGATTA---CTTGAGTCA--GGTGAACAAGGGGCGT 286
consensus_15792#0 TCAGTGAACGGGAGGATGCTGATCTCTATAGGATTGGGATTACTGGTGAATCACTTGGAG 537
* * ** * * * ** * ** ** * * * * ****** *
consensus_15792#1 GTACCTGTGCTTCTTC--TGAAACTT-AACGATACAACCCCTAAAAGAAAACCAGTTATT 369
consensus_15792#2 GTACCTGTTCTTTCTTCTTGAAACTTTAACGATACAACCCCTAAAAGAAAACCAGTTATT 346
consensus_15792#0 ATAATCAAGAACTATC--ATGATCTTTTGTGATCAAAAGCCCATAGTCCACTACTATGTT 595
** * * *** *** ** ** * * * * **
consensus_15792#1 GTATT-CCTGCACAGCTCATATAAATGCAAGGAATGGCTGCGTCCACTGCT-TGAGGCAT 427
consensus_15792#2 TTATTTCCTTCACAG-TNATATTAATTCAAGGATTG-CTTCGTC-ACTTTT--------- 394
consensus_15792#0 TTACTACTTCCAGAT-TAATGGAGTGGTATTGTGGTTTCTCAGCCATGGCAATGTGGCGA 654
** * * * ** * * ** * * * * *
consensus_15792#1 ATGCCTCCAGAGGCTACATTTCTGTTGCCATCGATTCTCGCTATCACGGTGAAAGGGCCA 487
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 GCGTCGTCGTCGTCAGGTCCTCCACTGCTGTTCAGTCCGCCGCCACCTACGCCGGTCCTC 714
consensus_15792#1 ACAATAACAGCACTTACATAGATGCACTAAAATCAGCTTGGAGGAATGGGGATGCAATGC 547
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 TCGCTTCCAG--GTGACGAACTCTGGTTGATGGCATCGCACTGCTGGTACCAGGTGATTC 772
consensus_15792#1 CTTTCATTCTTGACACGGTGTGGGACTTGATAAAGCTTGGAGATCATCTCAGTGAACGGG 607
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 ATTTTGCTGCCTTCA-ATTGTGAAATGAGAAATACCTGTAAGTGAAGGCCTAAGCTCAAG 831
consensus_15792#1 AGGATGTTGATCCCTGTAGGATTGGGATTACCGGTGAATCACTTGGAGGAATGCATGCAT 667
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 GAATAATTTGTTCTTTTTGAAAACAAAAAGCTCATAGGTAGAATGTTCACCACCAGGCAA 891
consensus_15792#1 GGTTTGCTGCTGT-TGTGGATACACGGTATAGTGTTGTTGTTCCTATAATTGGTGTTCAG 726
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 GTCAAGGAGCGAAGTATGGGGACAGTGTGTGCTCGGAAGATCTTTGCCAGCTTGTGTTTT 951
consensus_15792#1 GGATTTCGATGGGCCATAGATAATAACAAGTGGCAAGCTAGAGTTGATAGTATCAAACCT 786
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 GACTTCTGAAGGCATGCACAGATGTGAAGATATGAACTTCTAGGGGAGCTTTATAAACCG 1011
consensus_15792#1 CTATTTGAAGAGGCAAGAATTGATCTAGGGAAGAGTG-AAATAGATACAGAAGTTGTAGA 845
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 AGAATAGTTAAGGCAATACTTGATTTACTTTGGACTGCAAATTACTTGATCGGATAATCA 1071
consensus_15792#1 AAAGGTGTGGGACAAGATAGCACCTGGTCTGGACTCACAATTTGATGCGCCCTTTTCACT 905
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 ATATGTGGCGAGCTTTACACAGATTGGCTTTGATGAATCATT-AAAGGGCTATCGGCGGG 1130
consensus_15792#1 CCCTGTAATTGCACCACGGCCACTTCTCCTCCTGAATGGTGCTGAAGACCCTCGATGCCC 965
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 GTGAATATCTA-GCTTTGAACATGATTTGTTTTGATTCCTGTTGCAACGCACGGGCACAC 1189
consensus_15792#1 AGTACTTGGTTTACAGGAACCTGTTTCCAGAGCTGCTAAGGCTTATGAAGAAGTTGGTTC 1025
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 AACTAGTAAGTTGTAAATTCATCTTGCAAGCAGCTGGGAGAAATGTTTTGAACAATGAAT 1249
consensus_15792#1 TGCAGATAAGTTCATGTTCATTGCAGAGCCAGGAATTGGCCATCAAATGA-CAGCGAACA 1084
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 GGAATGCAAAATCTTTCTAATACCTGTAAACTGAATGAAATGGCTTATGAATAACTGAAT 1309
consensus_15792#1 TGGTGAAGGAAGCAAGTGATTGGTTTGATCGCTTCCTTTAGAGGGTTATGTATATGTTCC 1144
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 TCCTGTAAACGCAATGGCTTCTAGATCCCAGTAGTATTCAGAGTCTCAGACAAGAACATG 1369
consensus_15792#1 GAATACTCTTATTAT-ACCACATCGTGAGGGAAAGGCATACTCTACAACAAGTTGTCTCA 1203
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 ATGTGAGAGTAATGTCAGCTTTGCCCAAGGATGCGAAGAACTCACGGAGCAGCAAACTCA 1429
consensus_15792#1 GTTTATAATTGCTTATATTGAATATATGACTGGAATCGATTCAATTTCAAAACCATCTAA 1263
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 AGCGATGACACACACGCACGAGCAACAAATTGTAGTGGACACACACAATAGATCTCTGGA 1489
consensus_15792#1 TTTGTAGTCTACATACCCTAATAATTGCCAAAGGAGAAACATTTTGTAGCATGTAGGCAT 1323
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 GATGAACACACAGAAGTGCACACACACACATAGTTGTTAAATTCAGACCGGTGATCGAAA 1549
consensus_15792#1 TTCACAGTTTGAGAATACAGAAGTTGGGAGGAAGATTATTTAAAAAAAAAGGTTCTGATG 1383
consensus_15792#2 ------------------------------------------------------------
consensus_15792#0 CAGTGAGTCTACCTGTTCAAAGGCTCCCTGGTCCAACCGCTTGTTCACCGGTTTAACCGT 1609
consensus_15792#1 AGAAAAA------------- 1390
consensus_15792#2 --------------------
consensus_15792#0 CGGTTCAATAAATAACTACA 1629
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||