These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15806#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1268 fasta sequence [CCCAGGTGTTCGTCCGTGTCCTCTTCTCCACTCCACACACGCACACGCACAAGCCAAGCAGCAAGCAGCGGCGCCGATGAGAGGAGGAGTAGCTGGGCCCACCGCCGGCGAGCCGCCGGGGACGGAGGCGGAGGCGGAGGAGGTGGAGGAGAGCTCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC-GGGGGGGAAGAGGGCTGAGGGCCCCACC-GCCACC-ACC-TCGCC-TGGG-ACGGTT-GC-TTCCGGCCATCC-ACA---CAG---CTTTGG-AGTGG-TGGGATGGCCA-CC-GATCC-G-ACAGTTCAGGA-TGAA-CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA-GGGATGGTGACTGGAT-GCTCGTTGGAGATGTT-CCTTGGGAAATG-TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT-CAGATG-CGAATGGTCTTGGTCAG-CGATACCA-GGGAATTCACAGAACCATTGCTT-CAACAAGA-GGCAGATCCTGAGAGCGTGTGACAAGG-AAAAGAGCTATACCGCTGGTGAAGC-TTGGAGCGTG-CTTGAT-GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA-CA-GGGCTCACCC-GGTTCT-GTTATATTTTT-GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACAGCCTCACAAATCTCTATGAATTAGCCCTGGAGTTTCATTTGATTAAAAAAAAAAAAAAA] [+] EMBL AK104501 [CCCAGGTGTTCGTCCGTGTCCTCTTCTCCACTCCACACACGCACACGCACAAGCCAAGCAGCAAGCAGCGGCGCCGATGAGAGGAGGAGTAGCTGGGCCCACCGCCGGCGAGCCGCCGGGGACGGAGGCGGAGGCGGAGGAGGTGGAGGAGAGCTCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACACAGCAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATG ] [+] EMBL OSS4975A [ CCGTGTCCTCTTCTCCACTCCACACACGCACACGCACAAGCCAAGCAGCAAGCAGCGGCGCCGATGAGAGGAGGAGTAGCTNGGNCCACCGACGGCGAGCCG CGNGGACGGAGGCGGAGGCGNAGGANGTGGAGGAGAGCTCAGCTGGGGACGACGAGGAGCTGGAGCTCNGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGC GCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGC GCGGCGGC GGGGGTGAAGAG ] [+] EMBL AK069892 [ TCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACAGCCTCACAAATCTCTATGAATTAGCCCTGGAGT ] [+] EMBL AK104802 [ TCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATG ] [+] EMBL CF325970 [ TCAGCTGTGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGC ] [+] EMBL CB650722 [ TCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGNGAAATG TTT ] [+] EMBL CB638149 [ TCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCG ] [+] EMBL CF325622 [ GCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGCGGGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGGT GC TTCCGGCCATCC ACACAGCAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAACGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACAT ] [+] EMBL CB681314 [ CTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAGCACCTTTGG AGTGG TGGGATGGCCA CCGGATCCTGTACAGTTCGGGA TGAA CAGCCTGTTCAATCACGCTACAGAAAACACATCTGAAACCGACTCCTTTAATACCGCCACCAATGAATCTGATGTGCATAAGGACAAGGAGGAGGGCGAAAATAAAGGACGGG ] [+] EMBL C98135 [ aAAAAGGCTTGAGGCCCCCACCGGCCACCAACCTTCGCCTTGGGNACGGTTNGC TTCCGGCCATCCNACA CAG CTTTGGAATTGGTTGGGATGGCCACCC GATCC G ACAGTTCAGGATTGAACCAGCNTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAaaaaaaaa ] [+] EMBL BI118786 [ gtCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAAGTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGCTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAGCCGATACCA GTGAATTCACAGAACCATTGCTT CAACAAGAGGGCAGATCCTGAGAGCGTGTGACAAGGAAAAAGAGCTATACCGCTGGTGAAGCTTTGGAGCGTGCCTTGATGGGTTAATTACTTGGTCAG ] [-] EMBL CB650723 [ CGCT GGGG ACGG T GCTTTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCC ] [+] EMBL OSS0884A [ CGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCANGNAGACCGTNACNAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGANAAGAAAGGACGGG ] [+] EMBL BM418857 [ CCAGCTCACCTACGAGGACACGGGATGGTGACTGGAT GCTC TTGGAGATGTTCCCTTGGGAAATGTTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCCTTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCTGGTTATATTTTTGGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTC CCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACA CCTCAC AATCTCTATGAATTAGCCCTGGAGTTTCATTTGATTAAAAAAAAA ] [+] EMBL BI809321 [ GAT GTGACTGGATGGCTC TTGGAGATGTT CCTTGGGAAAT TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCACGGGAATTCACAGAACCATTGCTT CAACAAGA GCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACC CTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACCACGGGCTCACCCAGGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTAaaaaaaaaa ] [+] EMBL C98290 [ TCATGAGGNCATCCAGATGCCGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTTNCAACAAGA GGCAGACCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACAGCCTCACAAATCTCTATGAATTAGCCCTGGAGTTTCATTAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15806#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 796 fasta sequence [AGCTTTGGAGTGGTGGGATGGCCACCGATCCGACAGTTCAGGATGAACAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACAGGGATGGTGACTGGATGCT-CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA-GGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA-CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT-CGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGAAAAAAAAAAAAAAAAANAAAAAAN] [-] EMBL CB681315 [AGCTTTGGAGTGGTGGGATGGCCACCGATCCGACAGTTCAGGATGAACAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACAGGGATGGTGACTGGATGCT CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA GGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT CGCCTTGCTCTGCTTGCATGTACAAGTATGTGTTTCTAGTAGTTTTTATGGTGTTTGATGAAAAAAAAAAAAga ] [+] EMBL BI807247 [ GTCATT GAAAGAA GTTGATCTC ATGCGCACCGCTCATACAAGACCCTTGCATTAGCC TGAACTCATGTTCACG AGCCGTCCATT GCC TTGCGCTTCTCATAATAC AACTCGCTG AACTACTAGAC ACTCTGCCGAATACCAGCTCACCTACGAGGACAGGGATGGTGACTGGATGCT CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCACGGGAATTCACAGAACCCTTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACC CTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACCAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT C CCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGAAAAAAAAAA ] [+] EMBL AU174172 [ TCACCTACGAGGACAGGGATGGTGACTGGATGCT CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTNTTGGTCAGCGATACCA GGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCN CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCCGCCNTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGAAAAAA ] [+] EMBL OS1445A [ CCTACGAGGACAGGGATGGTGACTGGATGCT CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA GGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGGAGCGTGCTTNATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT CGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGT ] [+] EMBL AU075793 [ GACAGGGATGGTGACTGGATGCTCCGTTGGAGATGTTCCTTGGGAAATGTTTGTCNGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA GGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT CGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTNGTTTTTATGGTGTTTGATGAAAAAAAAAAAAAAAAANAAAAAAN] [+] EMBL AU097007 [ GGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT CGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGAAAAA ] consensusID : consensus_15806#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [GGATTTTTACCACTTTAATCAGCTAAAACCACCCTTTAGGTTCTAACCTGATTTGCGCTCATTTTACCGACAATCCTTGCAGGTCAGCGATACCACGGGAATTCACAGAACCATTGCTTCAACAAGAGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACAGCCTCACAATCTCTATGAATTAGCCTGGAGTTTCATTGATTAAAAA] [+] EMBL BI810214 [GGATTTTTACCACTTTAATCAGCTAAAACCACCCTTTAGGTTCTAACCTGATTTGCGCTCATTTTACCGACAATCCTTGCAGGTCAGCGATACCACGGGAATTCACAGAACCATTGCTTCAACAAGAGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACAGCCTCACAATCTCTATGAATTAGCCTGGAGTTTCATTGATTAAAAA] consensusID : consensus_15806#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [AAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACAGGGCTCNCCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097442 [AAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACAGGGCTCNCCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15806#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence [TCAGCTGGGGACGACGAGGAGCTGGAGCTCNGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGNCGTGCCGAATCCTNACGGCCAGGGTCCTGCAGCCGGNGGCGGNGNTGTCACCGNACTNCTNCNTGTCGTNGTCATNAANGACGGTGGCGGTAGGCNNCGNAAGTAAG] [+] EMBL OS0766A [TCAGCTGGGGACGACGAGGAGCTGGAGCTCNGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGNCGTGCCGAATCCTNACGGCCAGGGTCCTGCAGCCGGNGGCGGNGNTGTCACCGNACTNCTNCNTGTCGTNGTCATNAANGACGGTGGCGGTAGGCNNCGNAAGTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 ------------------------------------------------------------ consensus_15806#0 CCCAGGTGTTCGTCCGTGTCCTCTTCTCCACTCCACACACGCACACGCACAAGCCAAGCA 60 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 ------------------------------------------------------------ consensus_15806#0 GCAAGCAGCGGCGCCGATGAGAGGAGGAGTAGCTGGGCCCACCGCCGGCGAGCCGCCGGG 120 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 ------------------------------------------------------------ consensus_15806#0 GACGGAGGCGGAGGCGGAGGAGGTGGAGGAGAGCTCAGCTGGGGACGACGAGGAGCTGGA 180 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 ------------------------------------------------------------ consensus_15806#0 GCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAAT 240 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 ------------------------------------------------------------ consensus_15806#0 CCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTC 300 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 ------------------------------------------------------------ consensus_15806#0 GTCATCCCCCGCGGCGGCGGCGGCGGCGGGGGGGAAGAGGGCTGAGGGCCCCACCGCCAC 360 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 -------------------------------------AGCTTTGGAGTGGTGGGATGGCC 23 consensus_15806#0 CACCTCGCCTGGGACGGTTGCTTCCGGCCATCCACACAGCTTTGGAGTGGTGGGATGGCC 420 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 ACCGATCCGACAGTTCAGGATGAACAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGA 83 consensus_15806#0 ACCGATCCGACAGTTCAGGATGAACAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGA 480 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 AACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGG 143 consensus_15806#0 AACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGG 540 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 CGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGG 203 consensus_15806#0 CGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGG 600 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 AAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACT 263 consensus_15806#0 AAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACT 660 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 CATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACT 323 consensus_15806#0 CATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACT 720 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ------------------------------------------------------------ consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 ACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACAGGGATGGTGACTGGATGCT 383 consensus_15806#0 ACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACAGGGATGGTGACTGGATGCT 780 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 ----GGATTTTTACCACTTTAATCAGCTAAAACCACCCTTTAGGTTCTAACCTGATTTGC 56 consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGA---GGATCAT 440 consensus_15806#0 CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGA---GGATCAT 837 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 GCTCATTTTACCGACAATCCTTGCAGGTCAGCGATACCACGGGAATTCACAGAACCATTG 116 consensus_15806#3 ------------------------------------------------------------ consensus_15806#1 GAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA-GGGAATTCACAGAACCATTG 499 consensus_15806#0 GAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA-GGGAATTCACAGAACCATTG 896 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 CTTCAACAAGAG-CAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACC-CTGGTGA 174 consensus_15806#3 -----------------------------------------------------------A 1 consensus_15806#1 CTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGA 559 consensus_15806#0 CTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGA 956 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 AGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAA 234 consensus_15806#3 AGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAA 61 consensus_15806#1 AGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAA 619 consensus_15806#0 AGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAA 1016 consensus_15806#4 ------------------------------------------TCAGCTGGGGACGACGAG 18 *** * * * * * consensus_15806#2 GAAAGAGCCACAGGGCTCACCC--GGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTT 292 consensus_15806#3 GAAAGAGCCACAGGGCTCNCCC--GGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTT 119 consensus_15806#1 GAAAGAGCCACAGGGCTCACCC--GGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTT 677 consensus_15806#0 GAAAGAGCCACAGGGCTCACCC--GGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTT 1074 consensus_15806#4 GAGCTGGAGCTCNGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGNCG 78 ** * ***** ** ** ** * * ** * * * consensus_15806#2 TTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAG 352 consensus_15806#3 TTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAG 179 consensus_15806#1 TTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAG 737 consensus_15806#0 TTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAG 1134 consensus_15806#4 TGCCGAATCCTNACGGC---CAGGGTCCTGCAGCCGGNG-GCGGNGNTGTCAC---CGNA 131 * ** ** ** * * * * ** ** * * ** * consensus_15806#2 TATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACT 412 consensus_15806#3 TATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACT 239 consensus_15806#1 TATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGAAAAAAAAAAAAAAAAANAAAAAAN- 796 consensus_15806#0 TATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACT 1194 consensus_15806#4 CTNCTNCNTGTCGTNGTCATNAANGACGGTGGCGGTAGGCNNCGNAAGTAAG-------- 183 * * * ** ** * * * ** * * consensus_15806#2 ACTGACTCTTGCACAGCCTCACAA-TCTCTATGAATTAGCC-TGGAGTTTCATTGATTAA 470 consensus_15806#3 AAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAAA------------------------- 273 consensus_15806#1 ------------------------------------------------------------ consensus_15806#0 ACTGACTCTTGCACAGCCTCACAAATCTCTATGAATTAGCCCTGGAGTTTCATTTGATTA 1254 consensus_15806#4 ------------------------------------------------------------ consensus_15806#2 AAA----------- 473 consensus_15806#3 -------------- consensus_15806#1 -------------- consensus_15806#0 AAAAAAAAAAAAAA 1268 consensus_15806#4 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||