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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15806#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1268 fasta sequence
[CCCAGGTGTTCGTCCGTGTCCTCTTCTCCACTCCACACACGCACACGCACAAGCCAAGCAGCAAGCAGCGGCGCCGATGAGAGGAGGAGTAGCTGGGCCCACCGCCGGCGAGCCGCCGGGGACGGAGGCGGAGGCGGAGGAGGTGGAGGAGAGCTCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC-GGGGGGGAAGAGGGCTGAGGGCCCCACC-GCCACC-ACC-TCGCC-TGGG-ACGGTT-GC-TTCCGGCCATCC-ACA---CAG---CTTTGG-AGTGG-TGGGATGGCCA-CC-GATCC-G-ACAGTTCAGGA-TGAA-CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA-GGGATGGTGACTGGAT-GCTCGTTGGAGATGTT-CCTTGGGAAATG-TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT-CAGATG-CGAATGGTCTTGGTCAG-CGATACCA-GGGAATTCACAGAACCATTGCTT-CAACAAGA-GGCAGATCCTGAGAGCGTGTGACAAGG-AAAAGAGCTATACCGCTGGTGAAGC-TTGGAGCGTG-CTTGAT-GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA-CA-GGGCTCACCC-GGTTCT-GTTATATTTTT-GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACAGCCTCACAAATCTCTATGAATTAGCCCTGGAGTTTCATTTGATTAAAAAAAAAAAAAAA]
[+] EMBL AK104501 [CCCAGGTGTTCGTCCGTGTCCTCTTCTCCACTCCACACACGCACACGCACAAGCCAAGCAGCAAGCAGCGGCGCCGATGAGAGGAGGAGTAGCTGGGCCCACCGCCGGCGAGCCGCCGGGGACGGAGGCGGAGGCGGAGGAGGTGGAGGAGAGCTCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACACAGCAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATG ]
[+] EMBL OSS4975A [ CCGTGTCCTCTTCTCCACTCCACACACGCACACGCACAAGCCAAGCAGCAAGCAGCGGCGCCGATGAGAGGAGGAGTAGCTNGGNCCACCGACGGCGAGCCG CGNGGACGGAGGCGGAGGCGNAGGANGTGGAGGAGAGCTCAGCTGGGGACGACGAGGAGCTGGAGCTCNGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGC GCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGC GCGGCGGC GGGGGTGAAGAG ]
[+] EMBL AK069892 [ TCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACAGCCTCACAAATCTCTATGAATTAGCCCTGGAGT ]
[+] EMBL AK104802 [ TCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATG ]
[+] EMBL CF325970 [ TCAGCTGTGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGC ]
[+] EMBL CB650722 [ TCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGNGAAATG TTT ]
[+] EMBL CB638149 [ TCAGCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCG ]
[+] EMBL CF325622 [ GCTGGGGACGACGAGGAGCTGGAGCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAATCCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGCGGGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGGT GC TTCCGGCCATCC ACACAGCAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAACGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACAT ]
[+] EMBL CB681314 [ CTCCTCCGTGTCGTCGTCATCCCCCGCGGCGGCGGCGGCGGC GGGGGGGAAGAGGGCTGAGGGCCCCACC GCCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAGCACCTTTGG AGTGG TGGGATGGCCA CCGGATCCTGTACAGTTCGGGA TGAA CAGCCTGTTCAATCACGCTACAGAAAACACATCTGAAACCGACTCCTTTAATACCGCCACCAATGAATCTGATGTGCATAAGGACAAGGAGGAGGGCGAAAATAAAGGACGGG ]
[+] EMBL C98135 [ aAAAAGGCTTGAGGCCCCCACCGGCCACCAACCTTCGCCTTGGGNACGGTTNGC TTCCGGCCATCCNACA CAG CTTTGGAATTGGTTGGGATGGCCACCC GATCC G ACAGTTCAGGATTGAACCAGCNTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAaaaaaaaa ]
[+] EMBL BI118786 [ gtCACC ACC TCGCC TGGG ACGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAAGTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGCTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAGCCGATACCA GTGAATTCACAGAACCATTGCTT CAACAAGAGGGCAGATCCTGAGAGCGTGTGACAAGGAAAAAGAGCTATACCGCTGGTGAAGCTTTGGAGCGTGCCTTGATGGGTTAATTACTTGGTCAG ]
[-] EMBL CB650723 [ CGCT GGGG ACGG T GCTTTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACA GGGATGGTGACTGGAT GCTCGTTGGAGATGTT CCTTGGGAAATG TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCC ]
[+] EMBL OSS0884A [ CGGTT GC TTCCGGCCATCC ACA CAG CTTTGG AGTGG TGGGATGGCCA CC GATCC G ACAGTTCAGGA TGAA CAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCANGNAGACCGTNACNAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGANAAGAAAGGACGGG ]
[+] EMBL BM418857 [ CCAGCTCACCTACGAGGACACGGGATGGTGACTGGAT GCTC TTGGAGATGTTCCCTTGGGAAATGTTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCCTTGCTT CAACAAGA GGCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCTGGTTATATTTTTGGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTC CCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACA CCTCAC AATCTCTATGAATTAGCCCTGGAGTTTCATTTGATTAAAAAAAAA ]
[+] EMBL BI809321 [ GAT GTGACTGGATGGCTC TTGGAGATGTT CCTTGGGAAAT TTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACAT CAGATG CGAATGGTCTTGGTCAG CGATACCACGGGAATTCACAGAACCATTGCTT CAACAAGA GCAGATCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACC CTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACCACGGGCTCACCCAGGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTAaaaaaaaaa ]
[+] EMBL C98290 [ TCATGAGGNCATCCAGATGCCGAATGGTCTTGGTCAG CGATACCA GGGAATTCACAGAACCATTGCTTNCAACAAGA GGCAGACCCTGAGAGCGTGTGACAAGG AAAAGAGCTATACCGCTGGTGAAGC TTGGAGCGTG CTTGAT GGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CA GGGCTCACCC GGTTCT GTTATATTTTT GCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACAGCCTCACAAATCTCTATGAATTAGCCCTGGAGTTTCATTAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15806#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 796 fasta sequence
[AGCTTTGGAGTGGTGGGATGGCCACCGATCCGACAGTTCAGGATGAACAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACAGGGATGGTGACTGGATGCT-CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA-GGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA-CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT-CGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGAAAAAAAAAAAAAAAAANAAAAAAN]
[-] EMBL CB681315 [AGCTTTGGAGTGGTGGGATGGCCACCGATCCGACAGTTCAGGATGAACAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGAAACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGGCGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGGAAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACTCATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACTACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACAGGGATGGTGACTGGATGCT CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA GGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT CGCCTTGCTCTGCTTGCATGTACAAGTATGTGTTTCTAGTAGTTTTTATGGTGTTTGATGAAAAAAAAAAAAga ]
[+] EMBL BI807247 [ GTCATT GAAAGAA GTTGATCTC ATGCGCACCGCTCATACAAGACCCTTGCATTAGCC TGAACTCATGTTCACG AGCCGTCCATT GCC TTGCGCTTCTCATAATAC AACTCGCTG AACTACTAGAC ACTCTGCCGAATACCAGCTCACCTACGAGGACAGGGATGGTGACTGGATGCT CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCACGGGAATTCACAGAACCCTTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACC CTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACCAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT C CCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGAAAAAAAAAA ]
[+] EMBL AU174172 [ TCACCTACGAGGACAGGGATGGTGACTGGATGCT CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTNTTGGTCAGCGATACCA GGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCN CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCCGCCNTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGAAAAAA ]
[+] EMBL OS1445A [ CCTACGAGGACAGGGATGGTGACTGGATGCT CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA GGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGGAGCGTGCTTNATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT CGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGT ]
[+] EMBL AU075793 [ GACAGGGATGGTGACTGGATGCTCCGTTGGAGATGTTCCTTGGGAAATGTTTGTCNGCTCTGTGAAGAGGTTGAGGATCATGAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA GGGAATTCACAGAACCATTGCTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT CGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTNGTTTTTATGGTGTTTGATGAAAAAAAAAAAAAAAAANAAAAAAN]
[+] EMBL AU097007 [ GGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCA CAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGT CGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGAAAAA ]
consensusID : consensus_15806#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence
[GGATTTTTACCACTTTAATCAGCTAAAACCACCCTTTAGGTTCTAACCTGATTTGCGCTCATTTTACCGACAATCCTTGCAGGTCAGCGATACCACGGGAATTCACAGAACCATTGCTTCAACAAGAGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACAGCCTCACAATCTCTATGAATTAGCCTGGAGTTTCATTGATTAAAAA]
[+] EMBL BI810214 [GGATTTTTACCACTTTAATCAGCTAAAACCACCCTTTAGGTTCTAACCTGATTTGCGCTCATTTTACCGACAATCCTTGCAGGTCAGCGATACCACGGGAATTCACAGAACCATTGCTTCAACAAGAGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCCTGGTGAAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACAGGGCTCACCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTACTGACTCTTGCACAGCCTCACAATCTCTATGAATTAGCCTGGAGTTTCATTGATTAAAAA]
consensusID : consensus_15806#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence
[AAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACAGGGCTCNCCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU097442 [AAGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAAGAAAGAGCCACAGGGCTCNCCCGGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTTTTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAGTATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15806#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence
[TCAGCTGGGGACGACGAGGAGCTGGAGCTCNGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGNCGTGCCGAATCCTNACGGCCAGGGTCCTGCAGCCGGNGGCGGNGNTGTCACCGNACTNCTNCNTGTCGTNGTCATNAANGACGGTGGCGGTAGGCNNCGNAAGTAAG]
[+] EMBL OS0766A [TCAGCTGGGGACGACGAGGAGCTGGAGCTCNGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGNCGTGCCGAATCCTNACGGCCAGGGTCCTGCAGCCGGNGGCGGNGNTGTCACCGNACTNCTNCNTGTCGTNGTCATNAANGACGGTGGCGGTAGGCNNCGNAAGTAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 ------------------------------------------------------------
consensus_15806#0 CCCAGGTGTTCGTCCGTGTCCTCTTCTCCACTCCACACACGCACACGCACAAGCCAAGCA 60
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 ------------------------------------------------------------
consensus_15806#0 GCAAGCAGCGGCGCCGATGAGAGGAGGAGTAGCTGGGCCCACCGCCGGCGAGCCGCCGGG 120
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 ------------------------------------------------------------
consensus_15806#0 GACGGAGGCGGAGGCGGAGGAGGTGGAGGAGAGCTCAGCTGGGGACGACGAGGAGCTGGA 180
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 ------------------------------------------------------------
consensus_15806#0 GCTCGGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGCCGTGCCGAAT 240
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 ------------------------------------------------------------
consensus_15806#0 CCTGACGGCCAGGGACCTGCAGCCGGCGGCGGCGCTGTCACCGGACTCCTCCGTGTCGTC 300
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 ------------------------------------------------------------
consensus_15806#0 GTCATCCCCCGCGGCGGCGGCGGCGGCGGGGGGGAAGAGGGCTGAGGGCCCCACCGCCAC 360
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 -------------------------------------AGCTTTGGAGTGGTGGGATGGCC 23
consensus_15806#0 CACCTCGCCTGGGACGGTTGCTTCCGGCCATCCACACAGCTTTGGAGTGGTGGGATGGCC 420
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 ACCGATCCGACAGTTCAGGATGAACAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGA 83
consensus_15806#0 ACCGATCCGACAGTTCAGGATGAACAGCCTGTTCAATCAGGCTAAAGAAAACACATCTGA 480
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 AACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGG 143
consensus_15806#0 AACCGACACCAAGAAGACCGCCACCAATGAATCTGATGTGCAGAAGGACAAGGAGGAGGG 540
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 CGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGG 203
consensus_15806#0 CGAAAAGAAAGGACGGGTTGCTGGATGGGTGAAGGTGAACATGGATGGAGAGGTCATTGG 600
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 AAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACT 263
consensus_15806#0 AAGGAAGGTGGATCTCAATGCGCACCGCTCATACAAGACCCTTGCATTAGCCCTTGAACT 660
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 CATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACT 323
consensus_15806#0 CATGTTCACGAAGCCGTCCATTGGCCTTTGCGCTTCTCATAATACAAACTCGCTGAAACT 720
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ------------------------------------------------------------
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 ACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACAGGGATGGTGACTGGATGCT 383
consensus_15806#0 ACTAGACAACTCTGCCGAATACCAGCTCACCTACGAGGACAGGGATGGTGACTGGATGCT 780
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 ----GGATTTTTACCACTTTAATCAGCTAAAACCACCCTTTAGGTTCTAACCTGATTTGC 56
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGA---GGATCAT 440
consensus_15806#0 CGTTGGAGATGTTCCTTGGGAAATGTTTGTCAGCTCTGTGAAGAGGTTGA---GGATCAT 837
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 GCTCATTTTACCGACAATCCTTGCAGGTCAGCGATACCACGGGAATTCACAGAACCATTG 116
consensus_15806#3 ------------------------------------------------------------
consensus_15806#1 GAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA-GGGAATTCACAGAACCATTG 499
consensus_15806#0 GAGGACATCAGATGCGAATGGTCTTGGTCAGCGATACCA-GGGAATTCACAGAACCATTG 896
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 CTTCAACAAGAG-CAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACC-CTGGTGA 174
consensus_15806#3 -----------------------------------------------------------A 1
consensus_15806#1 CTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGA 559
consensus_15806#0 CTTCAACAAGAGGCAGATCCTGAGAGCGTGTGACAAGGAAAAGAGCTATACCGCTGGTGA 956
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 AGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAA 234
consensus_15806#3 AGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAA 61
consensus_15806#1 AGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAA 619
consensus_15806#0 AGCTTGGAGCGTGCTTGATGGTTAATTACTTGTCCAGTTAAAATAGCAGAAGGCTAGTAA 1016
consensus_15806#4 ------------------------------------------TCAGCTGGGGACGACGAG 18
*** * * * * *
consensus_15806#2 GAAAGAGCCACAGGGCTCACCC--GGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTT 292
consensus_15806#3 GAAAGAGCCACAGGGCTCNCCC--GGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTT 119
consensus_15806#1 GAAAGAGCCACAGGGCTCACCC--GGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTT 677
consensus_15806#0 GAAAGAGCCACAGGGCTCACCC--GGTTCTGTTATATTTTTGCCTTTGTGGTGCCTGTTT 1074
consensus_15806#4 GAGCTGGAGCTCNGGCTCAGCCTTGGCTCCAAGAAACAGCAGCAGCAGCAGCATGCGNCG 78
** * ***** ** ** ** * * ** * * *
consensus_15806#2 TTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAG 352
consensus_15806#3 TTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAG 179
consensus_15806#1 TTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAG 737
consensus_15806#0 TTGTTTGCACTGTCGATCTGCAAGAGCATATGGTCGCCTTGCTCTGCTTGCATGTACAAG 1134
consensus_15806#4 TGCCGAATCCTNACGGC---CAGGGTCCTGCAGCCGGNG-GCGGNGNTGTCAC---CGNA 131
* ** ** ** * * * * ** ** * * ** *
consensus_15806#2 TATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACT 412
consensus_15806#3 TATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACT 239
consensus_15806#1 TATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGAAAAAAAAAAAAAAAAANAAAAAAN- 796
consensus_15806#0 TATGTCTTTCTAGTAGTTTTTATGGTGTTTGATGATGATCCTTGTGCCTACCTGATTACT 1194
consensus_15806#4 CTNCTNCNTGTCGTNGTCATNAANGACGGTGGCGGTAGGCNNCGNAAGTAAG-------- 183
* * * ** ** * * * ** * *
consensus_15806#2 ACTGACTCTTGCACAGCCTCACAA-TCTCTATGAATTAGCC-TGGAGTTTCATTGATTAA 470
consensus_15806#3 AAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAAA------------------------- 273
consensus_15806#1 ------------------------------------------------------------
consensus_15806#0 ACTGACTCTTGCACAGCCTCACAAATCTCTATGAATTAGCCCTGGAGTTTCATTTGATTA 1254
consensus_15806#4 ------------------------------------------------------------
consensus_15806#2 AAA----------- 473
consensus_15806#3 --------------
consensus_15806#1 --------------
consensus_15806#0 AAAAAAAAAAAAAA 1268
consensus_15806#4 --------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||