These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15840#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 1205 fasta sequence [TTCTCCCCTCCTCAACCAAGCAG-AAATGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC-CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA-CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA-TC-CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT-GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAAAAAAAAAAAAAAAAACACTGTCA] [+] EMBL CF308347 [TTCTCCCCTCCTCAACCAAGCAG AAATGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCCTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGT ] [+] EMBL AK068681 [ CCCTCCTCAACCAAGCAG AAATGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCCCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAG ] [+] EMBL CF279168 [ CCCTCCTCAACC AGCAA AATTGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCATGCGCTCTAGGAGGGTGGTGGCCATGGCC ] [+] EMBL OSS12207A [ angnCAGNAAATGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTNTCTTTNTCCGTNTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCNTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCNAGGGCAATGGCGGGCTGCCAAANATCGACCTCAAGTC CCCGCATGGNAGTAAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAANACCTCCTATTTNTCAGACCAGATGCGGTGTTCAACGG ] [+] EMBL OSS11938A [ gangnCAG AAATGGCGGCTTCTTGCNCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTTTNTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCNTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCNAGGGCAATGGCGGGCTGCCAAANATCGACCTCAAGTC CCCGCATGGAAGTAAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTNAGACCANATGCGGTGTTCAACGGCCAGAAACCCATNANTGGTGGAATCCCAAATTGtt ] [+] EMBL CF331387 [ GCGGCTTCTTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACTCTCTCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAATATCTACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTTTCAT CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCT ] [+] EMBL OSS3847A [ TTGCGCGCTCACCCTCCCCTCCGCCATNTCCGTCTCTGTNTCCGTCTCCTCCAATTNACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCNCCCGGCGTGGCGGTCTCCNAGGGCAATNGCGGGCTGCCAAAAATCGACCTCAAGTC CCCGCATGGAAGTa ] [+] EMBL OSS3841A [ TTGCGCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAAATCGACCTCAAGTC CCCGCATGGNAGTAAGGCTGAAATTTATCTATTTGGAGCCTGCGTAAC ] [+] EMBL CA758865 [ TTGCGCGCTCACCCTCCCCTCCGCCATCTCCTTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGCAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTAT ] [+] EMBL CF196594 [ GCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCNGTTCAATGTGGGATTTTNNNTTNNNNNCTCTGTATAAGGTTGCATTGCACTCTACNNNNCTGTCAA CAA ] [+] EMBL CF196556 [ GCGCTCACCCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTC CCCGCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGNTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAANTNNNNACTCCNNNNCTATTTCAGTGCTTCAATTT ] [+] EMBL CF281037 [ CCTCCCCTCCGCCATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAGGGTGGTGGCCATGGCCAGCGCGGGGCAGAAGGTGTACGCGCCCGGCGTGTTTGTCTCCGAGGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTCTCTTTCATGGGAGTGAGGCTGAAATTTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATTTGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTGCTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTGGTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGATGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGAC ] [+] EMBL AU088668 [ tcCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAACCAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAAAA ] [+] EMBL CF196937 [ TGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTANNNNNNTTATGTTGCNNNNNNGAACTTCTNNNNNNCTTTACATCNNNNAATGCNNNTGTCNNNGCCCnnnn ] [-] EMBL BI305490 [ TATAAGGTTGCATTGCACTCTACAAGCCTGTCAA CAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGACTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATCAGTCATATTTTTTAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGT ] [-] EMBL CF281036 [ GTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGA TCNCCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCAAAAAAA ] [-] EMBL CF279167 [ GCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGATTC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAACGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAAA ] [+] EMBL C74898 [ TGTAAGACCCTAAATAAGGATCCCGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACTNGATATGAATTA ] [-] EMBL CF308348 [ CGA TC CCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAAAAAAAAAAAAAAAAACACTGTCA] [+] EMBL AU173015 [ TTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAA ] [+] EMBL AU096124 [ catgGGATTGGNTGAC AAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGNTGTGGATCCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACT GATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGNAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTAAAAAAA ] consensusID : consensus_15840#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 526 fasta sequence [CGATCCCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGATTTATGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACTGATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCATCCTCTCCTTTTTATTAATGAGCGGCCTGCTAAGT] [+] EMBL CF323517 [CGATCCCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGATTTATGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACTGATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCATCCTCTCCTTTTTATTAATGAGCGGCCTGCTAAGT] [-] EMBL CF331386 [ TCCCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGA GCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATATCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGTTGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACTGATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATTTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCATCCTCTCCTTTTTATTAAaaaaa ] [+] EMBL CB679848 [ CAGAGCAGAAAATTGAACTGATATGAATTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATGAAATGCAAATGTCATAGCCCCTAATGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAGTAAATAAATAAATTCAG ] consensusID : consensus_15840#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence [TCACCTGGGCACAATGGGATTGGGTGACAAAAATTGTGGATATCAAAATGCGAATTGTTCAAGATCCCAAGTGGCTGTGGGAATCACTCAACTTGCAAGATGGAGGCATTGTTTCACACAAGATTTTGTCTGTGGTTGAAAAATGGCAAAGATTGGAAACAATTACAAACTGGGGCCAGAACCAATCTTGGGTGCCAAGACCAAGAATAATTGAACTGGTATATGAAATTATGAAGCTAAACTGGGCCACAAACACATAGAGTCACAAACAAATTATGTCTGCACAAAAATGGAACTTCTGCTTTTTGCTTGTACAATGCATGAAATCGCACAAATGGTCATAGCCCCTAATGTATCATTTATAGTGCCATAAGTCATATTTTGAAATTTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCAA] [+] EMBL BI813393 [TCACCTGGGCACAATGGGATTGGGTGACAAAAATTGTGGATATCAAAATGCGAATTGTTCAAGATCCCAAGTGGCTGTGGGAATCACTCAACTTGCAAGATGGAGGCATTGTTTCACACAAGATTTTGTCTGTGGTTGAAAAATGGCAAAGATTGGAAACAATTACAAACTGGGGCCAGAACCAATCTTGGGTGCCAAGACCAAGAATAATTGAACTGGTATATGAAATTATGAAGCTAAACTGGGCCACAAACACATAGAGTCACAAACAAATTATGTCTGCACAAAAATGGAACTTCTGCTTTTTGCTTGTACAATGCATGAAATCGCACAAATGGTCATAGCCCCTAATGTATCATTTATAGTGCCATAAGTCATATTTTGAAATTTTTTATGTAATAAATAAGTAAATAAATAAATTCAGTTCTCCCATTATTTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15840#0 TTCTCCCCTCCTCAACCAAGCAGAAATGGCGGCTTCTTGCGCGCTCACCCTCCCCTCCGC 60 consensus_15840#1 ------------------------------------------------------------ consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 CATCTCCGTCTCTGTCTCCGTCTCCTCCAATTCACCTCGACGGTTCAGGCGCTCTAGGAG 120 consensus_15840#1 ------------------------------------------------------------ consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 GGTGGTGGCCATGGCCAGCGTGGGGCAGAAGGTGTACGCGCCCGGCGTGGCGGTCTCCGA 180 consensus_15840#1 ------------------------------------------------------------ consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 GGGCAATGGCGGGCTGCCAAAGATCGACCTCAAGTCCCCGCATGGGAGTGAGGCTGAAAT 240 consensus_15840#1 ------------------------------------------------------------ consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 TTATCTATTTGGAGCCTGCGTAACATCTTGGAAAGTCCCCAGTGGAAAAGACCTCCTATT 300 consensus_15840#1 ------------------------------------------------------------ consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 TGTCAGACCAGATGCGGTGTTCAACGGCCAGAAACCCATCAGTGGTGGAATCCCACATTG 360 consensus_15840#1 ------------------------------------------------------------ consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 CTTCCCCCAATTCGGTCCTGGTACCATGCAGCAGCATGGATTTGCAAGGAACATGAATTG 420 consensus_15840#1 ------------------------------------------------------------ consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 GTCTATCACTGATTCAGAAGCTAATGAAGGAGATCCAGCTGTAACTTTGGAACTAAAAGA 480 consensus_15840#1 ------------------------------------------------------------ consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 TGACTCTTATAGCCGTTCAATGTGGGATTTTAGCTTCCAAGCTCTGTATAAGGTTGCATT 540 consensus_15840#1 ------------------------------------------------------------ consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 GCACTCTACAAGCCTGTCAACAACACTGAAAATAACAAATACAGACGATAAGCCTTTTTC 600 consensus_15840#1 ------------------------------------------------------------ consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 ATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGG 660 consensus_15840#1 ------------------------------------------------------------ consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 TCTCAAAGGTTGTAAGACCCTAAATAAGGATCCCGATCCCAAAAACCCTTTGGAGGGGAA 720 consensus_15840#1 ---------------------------------CGATCCCAAAAACCCTTTGGAGGGGAA 27 consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 AGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACC 780 consensus_15840#1 AGAAGAGAGGGAAGAGGTGACTTTTCCAGGATTTGTCGATTGCATTTACCTTGGTGCACC 87 consensus_15840#2 ------------------------------------------------------------ consensus_15840#0 GAGTGA-GCTCACCCTGG-ACAATGG-ATTGGGTGACAAAA-TTGTG-ATATCAAA-TGC 834 consensus_15840#1 GATTTATGCTCACCCTGG-ACAATGG-ATTGGGTGACAAAA-TTGTG-ATATCAAA-TGC 142 consensus_15840#2 ---------TCACCTGGGCACAATGGGATTGGGTGACAAAAATTGTGGATATCAAAATGC 51 ***** ** ******* ************** ***** ******** *** consensus_15840#0 GAATTGGTCA-GATGC--AGTG-CTGTGGAATCCTC---ACTTGCA-GATGGAGGC-TTG 885 consensus_15840#1 GAATTGGTCA-GATGC--AGTG-CTGTGGAATCCTC---ACTTGCA-GATGGAGGC-TTG 193 consensus_15840#2 GAATTGTTCAAGATCCCAAGTGGCTGTGGGAATCACTCAACTTGCAAGATGGAGGCATTG 111 ****** *** *** * **** ****** * * * ******* ********* *** consensus_15840#0 TTACA---AAGATTTTGTCTGTG-TTGAAAAT--GCAAAGATTGAAAC--ATTACAA-CT 936 consensus_15840#1 TTACA---AAGATTTTGTCTGTG-TTGAAAAT--GCAAAGATTGAAAC--ATTACAA-CT 244 consensus_15840#2 TTTCACACAAGATTTTGTCTGTGGTTGAAAAATGGCAAAGATTGGAAACAATTACAAACT 171 ** ** *************** ******* ********** ** ******* ** consensus_15840#0 GGGGCC-GAACCAATCTTGGGTGGCAGAGC--AGAA-AATTGAACTGATATG---AATTA 989 consensus_15840#1 GGGGCC-GAACCAATCTTGGGTGGCAGAGC--AGAA-AATTGAACTGATATG---AATTA 297 consensus_15840#2 GGGGCCAGAACCAATCTTGGGTGCCAAGACCAAGAATAATTGAACTGGTATATGAAATTA 231 ****** **************** ** * **** ********** *** ***** consensus_15840#0 TGAAGCTAAACTGGGCAA--AACA-ATAGAGT-ACAAC--AATTATGTT---GCAAAAAT 1040 consensus_15840#1 TGAAGCTAAACTGGGCAA--AACA-ATAGAGT-ACAAC--AATTATGTT---GCAAAAAT 348 consensus_15840#2 TGAAGCTAAACTGGGCCACAAACACATAGAGTCACAAACAAATTATGTCTGCACAAAAAT 291 **************** * **** ******* **** ******** ******* consensus_15840#0 G-AACTTCT-CTTTTTCTTTACAT----CATGAAAT---GCAAATG-TCATAGCCCCTAA 1090 consensus_15840#1 G-AACTTCT-CTTTTTCTTTACAT----CATGAAAT---GCAAATG-TCATAGCCCCTAA 398 consensus_15840#2 GGAACTTCTGCTTTTTGCTTGTACAATGCATGAAATCGCACAAATGGTCATAGCCCCTAA 351 * ******* ****** ** * ******** ****** ************* consensus_15840#0 TGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAG 1150 consensus_15840#1 TGTATCATCTAGTAGGTGGCATAAGTCATATTTTTGAAATTGTTTTATGTAATAAATAAG 458 consensus_15840#2 TGTATCATTTA--TAGTGCCATAAGTCATATTTT-GAAATT-TTTTATGTAATAAATAAG 407 ******** ** *** *************** ****** ****************** consensus_15840#0 TAAATAAATAAATTCAGTTCTCCCATTAAAAAAAAA----------AAAAAAAAAAACAC 1200 consensus_15840#1 TAAATAAATAAATTCAGTTCTCCCATTATTTCATCCTCTCCTTTTTATTAATGAGCGGCC 518 consensus_15840#2 TAAATAAATAAATTCAGTTCTCCCATTATTTCAA-------------------------- 441 **************************** * consensus_15840#0 TGTCA--- 1205 consensus_15840#1 TGCTAAGT 526 consensus_15840#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||