These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15846#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 806 fasta sequence [GCGTCGAATTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG-CTTCAAGGTCA-CGG-CCAT-GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA-GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC-GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC-GGCGTCACGCTCTCCTCGCTCGAGG-AGC-TCGGCCTCCT-CTCCAAGGCCGAGGACCTCGGCC-TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG-CCCTCGTCG-CGCTCCAGGCC-GTCC-TCGCCGCCGTCC-TCC-TCG-CCG-CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC-GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAAAAAAAAAA] [+] EMBL OSS14285A [GCGTCGAATTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCNGCCGCCACCNCCGTTCGCGAGGAGGC GCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTNGAGGTTGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAG GGTNGAGAAGGCCGGG ] [+] EMBL AU070475 [ ccgTTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATNGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCNGCCGCCACCNCCGTTCGCGAGGAGGC GCG CTTCAAGGTCA CNG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCNGGGATATTCGCGGANGGGAGCGAGGAGGTTGAGGTAGACGTGTTCAAGAAGCTGGAGA ] [+] EMBL AK071353 [ GCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCC GCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGT ] [+] EMBL AK099180 [ AAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGT ] [+] EMBL AU198167 [ AGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCACCGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCC ] [+] EMBL OSS15764A [ GAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGNGCTGCTGTCCAGNGCGGAGGAGCTC GGCGTCACGGTCTCCTC ] [+] EMBL OSS14369A [ AGAAGGGGAGGAGGAAGAAATNGCTGCCGTCCAAGCAGCAATCTCCACCTNCTGCTCTTCGTCTTGCCTGTCCCNGCCGCCACCNCCGTTCGCGAGGAGGC GCG CTTCAAGGTCA CNG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTNGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCACNGGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGANGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCC ] [+] EMBL AU070493 [ GAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGANCTC GGCGTCACGCTCTNCTCGCTCGAGG AGC ] [+] EMBL AU070478 [ GAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGNTGATGTCCAGGGCGGAGGAGCTC G ] [+] EMBL OSC8941 [ AAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGNCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACANGTACGANGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGNAGGGGAGCNAGGAGGTGGAGGTGGACGTTTTCAAGAAGCTGGAGATGCGGAAGGTGCTGANCAC GGT ] [+] EMBL OSS15524A [ AGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCNAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCG ] [+] EMBL C73394 [ GGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGNCCGNGCTGCTGTNCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTNCAAGGCCGAGGACCTC GCC TTCTCAGCCTCGTCGAGGCCGCCGCCGCCGNCTTCTCCGACGGCCTNGTCTCCGT TTGGTTCCGTTCCTTGTn ] [+] EMBL AU057766 [ GGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGCTTCGGCCTCCTNCTCCAAGGCCGAGGACCTCGGCCTTCCTCAGCCTCGTCG ] [+] EMBL OSS15683A [ AAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCNAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTTGTTCGGGGCGGGGATATTCGCGGAGGGGAGCTAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGANGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGGTCTTCTCGNTCGAGG AGC ] [+] EMBL AU163439 [ ccnGCCACCGCCGTTCCCAAGAAGCGGGCGTTTTCAAGGTCA CGGCCCATGGGCTCCCCAGAAGAAGGTGAACAGGTACGACGANAAAGTGGTCGAANCAGTGGTTC GGGCGGGGATATTCGCGGAGGGGA CGAGGAGGTGAAGGTGGACGTGTTCAAGAAGCTGGANAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCNCCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAAAAAAA ] [+] EMBL AU197994 [ AGGCCGGGCTCCTGTCCAGGGCGGAGGAGCTCGGGGGTCACGCTCTCCTCGCTCGAGGAAGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTNCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCTTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAaaaaa ] [+] EMBL AU198202 [ C TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTNTTNGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAA ] [+] EMBL AU096970 [ GACTCCGCCGCCCCTCGTCGCCGCTCCAGGCCGGTCCTTNGCCGCCGTCCTTCCTTCGCCCGCCCGCCGCCGGCCTCTTCGTCGGGTCCGTCGTCCTCGCCGGGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAaaaa ] [+] EMBL AU101298 [ GATTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAaaa ] [+] EMBL AU198105 [ C TNGCCGCCGTCC TCC TTG CCG CCGCCGCCGGCCTTTTTGTCGGNTCCGTNGTCCTCGCC GGCCTGCAGGAGTCCGACTGATNGTCNCCGCAGGGTTTNATGATCNCTAGGACATGTACGTATTAATCCCCGTATTTATACAGTGCTTAGTGTGTTNCTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCNATGGATGATTGTGTAATTAGGGCCGGGAAAAAAAAAAAAAAAAAAA] [+] EMBL AU198168 [ C TNGCCGCCGTCC TCC TNG CCG CCGCCGCCGGCCTNTTTGTCGGNTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATNGTCGCCGCAGGGTTTGATGATCNCTAGGACATGTACGTATTAATCNCCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAA AAAAAAAAAAAAA ] [+] EMBL AU057767 [ TCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTNATTAaaaaaaaa ] consensusID : consensus_15846#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [TTTCAAGNAACTGGAGAGNCGGAAGGGTTCTGACCACCGGTGGAGAAGCCCGGCTGNCTGTCCACGGGCCGGAGGAGCTCGGCGTCACTGCTCTCCTCGCTCGAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCCTCCTCAGCCTCGTCGAGGCCGCCCCTGCCGCCTCCCCCGACGCCCTCGCCTCCAGTCTCGCATCCCGCTCCTCGTCNGCCAGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCCGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTNCCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCCAAGGAGTNCNCCGGCTGCAAACAAAAAAAAAA] [+] EMBL BM038870 [TTTCAAGNAACTGGAGAGNCGGAAGGGTTCTGACCACCGGTGGAGAAGCCCGGCTGNCTGTCCACGGGCCGGAGGAGCTCGGCGTCACTGCTCTCCTCGCTCGAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCCTCCTCAGCCTCGTCGAGGCCGCCCCTGCCGCCTCCCCCGACGCCCTCGCCTCCAGTCTCGCATCCCGCTCCTCGTCNGCCAGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCCGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTNCCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCCAAGGAGTNCNCCGGCTGCAAACAAAAAAAAAA] consensusID : consensus_15846#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 479 fasta sequence [GGGACCAAGGAAGTTGAGTGGACCTGTTCCAAAGAAACCTGGAAGAGCCGAAAAGTTCTTGAACCACCGGTTGAAGAAAGCCCGGGCCTTGCCTGTCCCAGGGCCCGGAGAAGCTCGGCCGTCACAGCTCTCCTCGCCTTCAGAGGAGCTCGGCCCTCCCTCTCAAGCCAGGACCTCGGCCTCCTCAGCCTCGTCGAGCCCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCAGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCACGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTGCAGGAGTCCGACTGATCGTCCCCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTAAAAA] [+] EMBL BI797149 [GGGACCAAGGAAGTTGAGTGGACCTGTTCCAAAGAAACCTGGAAGAGCCGAAAAGTTCTTGAACCACCGGTTGAAGAAAGCCCGGGCCTTGCCTGTCCCAGGGCCCGGAGAAGCTCGGCCGTCACAGCTCTCCTCGCCTTCAGAGGAGCTCGGCCCTCCCTCTCAAGCCAGGACCTCGGCCTCCTCAGCCTCGTCGAGCCCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCAGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCACGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTGCAGGAGTCCGACTGATCGTCCCCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTAAAAA] consensusID : consensus_15846#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [CCGTCCAAGCAGCAATATCCACCTGCTGCTCTTCGTCTTGCCTGNNCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCGCTTCAAGGTACACGCCCATGGGCNNCTCAGAGAGAAGGTAGCACAGGCGACGGCGAGAAGTGGTCCGATGCAGTGGTTCGGGGCGGGGATATTTGGTGGAGGAGCAGCGAGGTAAGTGGTAGGTAGGACGTGCTTCAAGAAGCTGGAGAGGCGGAAGTTGCTGAGCACGGTGGAGACGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTCGGCGTCACGCTCTCCTCGCTCGAGGAGCTCGGCCTCCACTCCAAGGCCGAGGCCTCGCCTCCTCAGCCTCGCGAGCCGCCGCCGCCGCTCCCCGAGCCTGCTC] [+] EMBL OS37979 [CCGTCCAAGCAGCAATATCCACCTGCTGCTCTTCGTCTTGCCTGNNCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCGCTTCAAGGTACACGCCCATGGGCNNCTCAGAGAGAAGGTAGCACAGGCGACGGCGAGAAGTGGTCCGATGCAGTGGTTCGGGGCGGGGATATTTGGTGGAGGAGCAGCGAGGTAAGTGGTAGGTAGGACGTGCTTCAAGAAGCTGGAGAGGCGGAAGTTGCTGAGCACGGTGGAGACGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTCGGCGTCACGCTCTCCTCGCTCGAGGAGCTCGGCCTCCACTCCAAGGCCGAGGCCTCGCCTCCTCAGCCTCGCGAGCCGCCGCCGCCGCTCCCCGAGCCTGCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15846#1 ------------------------------------------------------------ consensus_15846#2 ------------------------------------------------------------ consensus_15846#0 GCGTCGAATTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAAT 60 consensus_15846#3 ------------------------------------------------------------ consensus_15846#1 ------------------------------------------------------------ consensus_15846#2 ------------------------------------------------------------ consensus_15846#0 GGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCC 120 consensus_15846#3 ------------------------------------------------------------ consensus_15846#1 ------------------------------------------------------------ consensus_15846#2 ------------------------------------------------------------ consensus_15846#0 ACCGCCGTTCGCGAGGAGGCGGCGCTTCAAGGTCACGGCCATGGCTCCCCAGAAGAAGGT 180 consensus_15846#3 ------------------------------------------------------------ consensus_15846#1 ------------------------------------------------------------ consensus_15846#2 ----------------------------------------------------------GG 2 consensus_15846#0 GAACAGGTACGACGAGAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGG 240 consensus_15846#3 ------------------------------------------------------------ consensus_15846#1 ------------------------TTTCAAGNAA--CTGGAGAGNCGGAAGGGTTCT--G 32 consensus_15846#2 GACCAAGGAAGTTGAGTGGACCTGTTCCAAAGAAACCTGGAAGAGCCGAAAAGTTCTTGA 62 consensus_15846#0 GAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAG--CTGGAGAGGCGGAAG-GTGCT--G 295 consensus_15846#3 ------------------------------------------------------------ consensus_15846#1 ACCACCGGTGGAG--AAGCCCGG---CTGNCTGTCCACGGGCC-GGAGGAGCTCGGC-GT 85 consensus_15846#2 ACCACCGGTTGAAGAAAGCCCGGGCCTTGCCTGTCCCAGGGCCCGGAGAAGCTCGGCCGT 122 consensus_15846#0 AGCAC-GGTGGAG--AAGGCCGGG--CTGC-TGTCC-AGGGC--GGAGGAGCTCGGC-GT 345 consensus_15846#3 -CCGTCCAAGCAGCAATATCCACCTGCTGCTCTTCGTCTTGCC-----TGNNCCGGCCGC 54 * * * ** ** ** ** **** * consensus_15846#1 CACTGCTCTCCTCGCTC---GAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCC 142 consensus_15846#2 CACAGCTCTCCTCGCCTTCAGAGGAGCTCGGCCCTCCCTCTCAAGCC-AGGACCTCGGCC 181 consensus_15846#0 CAC-GCTCTCCTCGCTC---GAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCC 401 consensus_15846#3 CACCGCCGTTCGCG-------AGGAGGCGG-----CGCTTCAAGGTACACGCCCATGGGC 102 *** ** * * ** ***** * * ** * * * * ** ** * consensus_15846#1 TCCTCAGCCTCGTCGAGGCCGCCCCTGCCGCCTCCCCCGACGCCCTCGCCTCCAGTCTCG 202 consensus_15846#2 TCCTCAGCCTCGTCGAGCCC--CGCCGCCGCCTCCCCCGACGCCCTCGCCTCC-GTCTCG 238 consensus_15846#0 TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCC-GTCTCG 460 consensus_15846#3 NNCTCAG----AGAGAAGGTAGCACAGGCGACGGCGA-GAAGTGGTCCGATGCAGTGGTT 157 ***** ** * * * ** * * ** * ** * * ** consensus_15846#1 CATCCCGCTCCTCGTCNGCCAGCCATCGCCGCCGTCGTCCTCGTCCCCGACG-ACTCC-- 259 consensus_15846#2 C-TCCCGCTCCTCGTCCC---GCCATCGCCGCCGTCGTCCTCGTCCCCGACG-ACTCCA- 292 consensus_15846#0 C-TCCCGCTCCTCGTCGCC--GCCATCGCCGCCGTCGTCCTCGTCCCCGACG-ACTCC-- 514 consensus_15846#3 CGGGGCGGGGATATTTGGTGGAGGAGCAGCGAGGTAAGTGGTAGGTAGGACGTGCTTCAA 217 * ** * * * * ** ** **** ** * consensus_15846#1 GCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGC-CGCCGCCGCCGG 318 consensus_15846#2 GCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCACGCCGCCGCCGG 352 consensus_15846#0 GCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGC-CGCCGCCGCCGG 573 consensus_15846#3 GAAGCTGGAGAGGCGGAAGTTGCTGAGCACGGTGGAGACGGCCGGGC-TGCTGTCCAGGG 276 * ** * *** ** * * ** * * * ** ** ** * * ** consensus_15846#1 CCTCTTCG-TCGGCTCCGTCGTCCTCGCCGGCCTNCCAGGAGTCCGACTGATCGTCGCCG 377 consensus_15846#2 CCTCTTCG-TCGGCTCCGTCGTCCTCGCCGGCCTGC-AGGAGTCCGACTGATCGTCCC-- 408 consensus_15846#0 CCTCTTCG-TCGGCTCCGTCGTCCTCGCCGGCCTGC-AGGAGTCCGACTGATCGTCGCCG 631 consensus_15846#3 CGGAGGAGCTCGGCGTCA-CGCTCTCCTCG---CTCGAGGAGCTCGGCCTCCACTCCAAG 332 * * ***** * ** *** ** * ***** ** * ** consensus_15846#1 CAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAG 437 consensus_15846#2 CAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAG 468 consensus_15846#0 CAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAG 691 consensus_15846#3 GCCGAGGCCTCGCCTCCTCAGCCTCGCGAGCCGCCGCCGCCGCTCCCCGAGCCTGCTC-- 390 * * ** * * * * * *** * **** consensus_15846#1 TGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCCAAGGAGTN 497 consensus_15846#2 TGTGTTAAAAA------------------------------------------------- 479 consensus_15846#0 TGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTT 751 consensus_15846#3 ------------------------------------------------------------ consensus_15846#1 CNCCGGCTGCAAACAAAAAAAAAA--------------------------------- 521 consensus_15846#2 --------------------------------------------------------- consensus_15846#0 CA--GGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAAAAAAAAAA 806 consensus_15846#3 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||