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Oryza sativa
cluster # 15846 cluster # 15846       Sequences # 25       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15846#0 length = 806 sequences # 22  
consensus_15846#1 length = 521 sequences # 1  
consensus_15846#2 length = 479 sequences # 1  
consensus_15846#3 length = 390 sequences # 1  

consensusID : consensus_15846#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 22
consensus length = 806
fasta sequence
                              [GCGTCGAATTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG-CTTCAAGGTCA-CGG-CCAT-GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA-GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC-GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC-GGCGTCACGCTCTCCTCGCTCGAGG-AGC-TCGGCCTCCT-CTCCAAGGCCGAGGACCTCGGCC-TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG-CCCTCGTCG-CGCTCCAGGCC-GTCC-TCGCCGCCGTCC-TCC-TCG-CCG-CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC-GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSS14285A            [GCGTCGAATTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCNGCCGCCACCNCCGTTCGCGAGGAGGC GCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTNGAGGTTGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAG GGTNGAGAAGGCCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU070475             [     ccgTTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATNGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCNGCCGCCACCNCCGTTCGCGAGGAGGC GCG CTTCAAGGTCA CNG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCNGGGATATTCGCGGANGGGAGCGAGGAGGTTGAGGTAGACGTGTTCAAGAAGCTGGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK071353             [             GCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCC GCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGT                                                         ]
[+] EMBL AK099180             [                             AAGAGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGT                                                                                                              ]
[+] EMBL AU198167             [                                AGAAGAGAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCACCGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCC                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSS15764A            [                                      GAGAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGNGCTGCTGTCCAGNGCGGAGGAGCTC GGCGTCACGGTCTCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSS14369A            [                                       AGAAGGGGAGGAGGAAGAAATNGCTGCCGTCCAAGCAGCAATCTCCACCTNCTGCTCTTCGTCTTGCCTGTCCCNGCCGCCACCNCCGTTCGCGAGGAGGC GCG CTTCAAGGTCA CNG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTNGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCACNGGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGANGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU070493             [                                        GAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGANCTC GGCGTCACGCTCTNCTCGCTCGAGG AGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU070478             [                                        GAAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGNTGATGTCCAGGGCGGAGGAGCTC G                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSC8941              [                                         AAGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGNCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACANGTACGANGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGNAGGGGAGCNAGGAGGTGGAGGTGGACGTTTTCAAGAAGCTGGAGATGCGGAAGGTGCTGANCAC GGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL OSS15524A            [                                          AGGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCNAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCG                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL C73394               [                                           GGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGNCCGNGCTGCTGTNCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTNCAAGGCCGAGGACCTC GCC TTCTCAGCCTCGTCGAGGCCGCCGCCGCCGNCTTCTCCGACGGCCTNGTCTCCGT TTGGTTCCGTTCCTTGTn                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU057766             [                                           GGGGAGGAGGAAGAAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGGGAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGCTTCGGCCTCCTNCTCCAAGGCCGAGGACCTCGGCCTTCCTCAGCCTCGTCG                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSS15683A            [                                                        AAATGGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCCACCGCCGTTCGCNAGGAGGCGGCG CTTCAAGGTCA CGG CCAT GGCTCCCCAGAAGAAGGTGAACAGGTACGACGA GAAGTGGTCGAAGCAGTTGTTCGGGGCGGGGATATTCGCGGAGGGGAGCTAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGANGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGGTCTTCTCGNTCGAGG AGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU163439             [                                                                                                                  ccnGCCACCGCCGTTCCCAAGAAGCGGGCGTTTTCAAGGTCA CGGCCCATGGGCTCCCCAGAAGAAGGTGAACAGGTACGACGANAAAGTGGTCGAANCAGTGGTTC GGGCGGGGATATTCGCGGAGGGGA CGAGGAGGTGAAGGTGGACGTGTTCAAGAAGCTGGANAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTC GGCGTCACGCTCTCCTCGCTCGAGG AGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCNCCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAAAAAAA   ]
[+] EMBL AU197994             [                                                                                                                                                                                                                                                                                                                          AGGCCGGGCTCCTGTCCAGGGCGGAGGAGCTCGGGGGTCACGCTCTCCTCGCTCGAGGAAGC TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTNCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCTTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAaaaaa                                                         ]
[+] EMBL AU198202             [                                                                                                                                                                                                                                                                                                                                                                                       C TCGGCCTCCT CTCCAAGGCCGAGGACCTCGGCC TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTNTTNGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAA        ]
[+] EMBL AU096970             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GACTCCGCCGCCCCTCGTCGCCGCTCCAGGCCGGTCCTTNGCCGCCGTCCTTCCTTCGCCCGCCCGCCGCCGGCCTCTTCGTCGGGTCCGTCGTCCTCGCCGGGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAaaaa                                                       ]
[+] EMBL AU101298             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GATTCCGCCG CCCTCGTCG CGCTCCAGGCC GTCC TCGCCGCCGTCC TCC TCG CCG CCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAaaa                                                           ]
[+] EMBL AU198105             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           C TNGCCGCCGTCC TCC TTG CCG CCGCCGCCGGCCTTTTTGTCGGNTCCGTNGTCCTCGCC GGCCTGCAGGAGTCCGACTGATNGTCNCCGCAGGGTTTNATGATCNCTAGGACATGTACGTATTAATCCCCGTATTTATACAGTGCTTAGTGTGTTNCTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCNATGGATGATTGTGTAATTAGGGCCGGGAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU198168             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           C TNGCCGCCGTCC TCC TNG CCG CCGCCGCCGGCCTNTTTGTCGGNTCCGTCGTCCTCGCC GGCCTGCAGGAGTCCGACTGATNGTCGCCGCAGGGTTTGATGATCNCTAGGACATGTACGTATTAATCNCCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAGGAA    AAAAAAAAAAAAA      ]
[+] EMBL AU057767             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTNATTAaaaaaaaa                   ]


>consensus_15846#0 GCGTCGAATTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAAT GGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCC ACCGCCGTTCGCGAGGAGGCGGCGCTTCAAGGTCACGGCCATGGCTCCCCAGAAGAAGGT GAACAGGTACGACGAGAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGG GAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAGCTGGAGAGGCGGAAGGTGCTGAGCAC GGTGGAGAAGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTCGGCGTCACGCTCTCCTCGCT CGAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCCTCCTCAGCCTCGTCGAGGC CGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCGCCGC CATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCGCCCTCGTCGCGCTCCAGGCCGT CCTCGCCGCCGTCCTCCTCGCCGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGC CGGCCTGCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTAC GTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAG ATGAAAATTTGTTGTAAATTTCAAGGAGTTTCAGGCTGCAATGGATGATTGTGTAATTAG GAACGGGAAAAAAAAAAAAAAAAAAA



consensusID : consensus_15846#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 521
fasta sequence
                              [TTTCAAGNAACTGGAGAGNCGGAAGGGTTCTGACCACCGGTGGAGAAGCCCGGCTGNCTGTCCACGGGCCGGAGGAGCTCGGCGTCACTGCTCTCCTCGCTCGAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCCTCCTCAGCCTCGTCGAGGCCGCCCCTGCCGCCTCCCCCGACGCCCTCGCCTCCAGTCTCGCATCCCGCTCCTCGTCNGCCAGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCCGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTNCCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCCAAGGAGTNCNCCGGCTGCAAACAAAAAAAAAA]

[+] EMBL BM038870             [TTTCAAGNAACTGGAGAGNCGGAAGGGTTCTGACCACCGGTGGAGAAGCCCGGCTGNCTGTCCACGGGCCGGAGGAGCTCGGCGTCACTGCTCTCCTCGCTCGAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCCTCCTCAGCCTCGTCGAGGCCGCCCCTGCCGCCTCCCCCGACGCCCTCGCCTCCAGTCTCGCATCCCGCTCCTCGTCNGCCAGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCCGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTNCCAGGAGTCCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCCAAGGAGTNCNCCGGCTGCAAACAAAAAAAAAA]


>consensus_15846#1 TTTCAAGNAACTGGAGAGNCGGAAGGGTTCTGACCACCGGTGGAGAAGCCCGGCTGNCTG TCCACGGGCCGGAGGAGCTCGGCGTCACTGCTCTCCTCGCTCGAGGAGCTCGGCCTCCTC TCCAAGGCCGAGGACCTCGGCCTCCTCAGCCTCGTCGAGGCCGCCCCTGCCGCCTCCCCC GACGCCCTCGCCTCCAGTCTCGCATCCCGCTCCTCGTCNGCCAGCCATCGCCGCCGTCGT CCTCGTCCCCGACGACTCCGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCT CCTCGCCGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTNCCAGGAGT CCGACTGATCGTCGCCGCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGT ATTTATACAGTGCTTAGTGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTG TAAATTTCCAAGGAGTNCNCCGGCTGCAAACAAAAAAAAAA



consensusID : consensus_15846#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 479
fasta sequence
                              [GGGACCAAGGAAGTTGAGTGGACCTGTTCCAAAGAAACCTGGAAGAGCCGAAAAGTTCTTGAACCACCGGTTGAAGAAAGCCCGGGCCTTGCCTGTCCCAGGGCCCGGAGAAGCTCGGCCGTCACAGCTCTCCTCGCCTTCAGAGGAGCTCGGCCCTCCCTCTCAAGCCAGGACCTCGGCCTCCTCAGCCTCGTCGAGCCCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCAGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCACGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTGCAGGAGTCCGACTGATCGTCCCCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTAAAAA]

[+] EMBL BI797149             [GGGACCAAGGAAGTTGAGTGGACCTGTTCCAAAGAAACCTGGAAGAGCCGAAAAGTTCTTGAACCACCGGTTGAAGAAAGCCCGGGCCTTGCCTGTCCCAGGGCCCGGAGAAGCTCGGCCGTCACAGCTCTCCTCGCCTTCAGAGGAGCTCGGCCCTCCCTCTCAAGCCAGGACCTCGGCCTCCTCAGCCTCGTCGAGCCCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCTCCCGCTCCTCGTCCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCAGCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCACGCCGCCGCCGGCCTCTTCGTCGGCTCCGTCGTCCTCGCCGGCCTGCAGGAGTCCGACTGATCGTCCCCAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTAAAAA]


>consensus_15846#2 GGGACCAAGGAAGTTGAGTGGACCTGTTCCAAAGAAACCTGGAAGAGCCGAAAAGTTCTT GAACCACCGGTTGAAGAAAGCCCGGGCCTTGCCTGTCCCAGGGCCCGGAGAAGCTCGGCC GTCACAGCTCTCCTCGCCTTCAGAGGAGCTCGGCCCTCCCTCTCAAGCCAGGACCTCGGC CTCCTCAGCCTCGTCGAGCCCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCCGTCTCGCT CCCGCTCCTCGTCCCGCCATCGCCGCCGTCGTCCTCGTCCCCGACGACTCCAGCCGCCCT CGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCACGCCGCCGCCGGCCTCTTCG TCGGCTCCGTCGTCCTCGCCGGCCTGCAGGAGTCCGACTGATCGTCCCCAGGGTTTGATG ATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAGTGTGTTAAAAA



consensusID : consensus_15846#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 390
fasta sequence
                              [CCGTCCAAGCAGCAATATCCACCTGCTGCTCTTCGTCTTGCCTGNNCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCGCTTCAAGGTACACGCCCATGGGCNNCTCAGAGAGAAGGTAGCACAGGCGACGGCGAGAAGTGGTCCGATGCAGTGGTTCGGGGCGGGGATATTTGGTGGAGGAGCAGCGAGGTAAGTGGTAGGTAGGACGTGCTTCAAGAAGCTGGAGAGGCGGAAGTTGCTGAGCACGGTGGAGACGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTCGGCGTCACGCTCTCCTCGCTCGAGGAGCTCGGCCTCCACTCCAAGGCCGAGGCCTCGCCTCCTCAGCCTCGCGAGCCGCCGCCGCCGCTCCCCGAGCCTGCTC]

[+] EMBL OS37979              [CCGTCCAAGCAGCAATATCCACCTGCTGCTCTTCGTCTTGCCTGNNCCGGCCGCCACCGCCGTTCGCGAGGAGGCGGCGCTTCAAGGTACACGCCCATGGGCNNCTCAGAGAGAAGGTAGCACAGGCGACGGCGAGAAGTGGTCCGATGCAGTGGTTCGGGGCGGGGATATTTGGTGGAGGAGCAGCGAGGTAAGTGGTAGGTAGGACGTGCTTCAAGAAGCTGGAGAGGCGGAAGTTGCTGAGCACGGTGGAGACGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTCGGCGTCACGCTCTCCTCGCTCGAGGAGCTCGGCCTCCACTCCAAGGCCGAGGCCTCGCCTCCTCAGCCTCGCGAGCCGCCGCCGCCGCTCCCCGAGCCTGCTC]


>consensus_15846#3 CCGTCCAAGCAGCAATATCCACCTGCTGCTCTTCGTCTTGCCTGNNCCGGCCGCCACCGC CGTTCGCGAGGAGGCGGCGCTTCAAGGTACACGCCCATGGGCNNCTCAGAGAGAAGGTAG CACAGGCGACGGCGAGAAGTGGTCCGATGCAGTGGTTCGGGGCGGGGATATTTGGTGGAG GAGCAGCGAGGTAAGTGGTAGGTAGGACGTGCTTCAAGAAGCTGGAGAGGCGGAAGTTGC TGAGCACGGTGGAGACGGCCGGGCTGCTGTCCAGGGCGGAGGAGCTCGGCGTCACGCTCT CCTCGCTCGAGGAGCTCGGCCTCCACTCCAAGGCCGAGGCCTCGCCTCCTCAGCCTCGCG AGCCGCCGCCGCCGCTCCCCGAGCCTGCTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15846#1      ------------------------------------------------------------
consensus_15846#2      ------------------------------------------------------------
consensus_15846#0      GCGTCGAATTCTTGCTTCGCCAGAGGAAGAAGAGAAGAGAGAAGGGGAGGAGGAAGAAAT 60
consensus_15846#3      ------------------------------------------------------------
                                                                                   

consensus_15846#1      ------------------------------------------------------------
consensus_15846#2      ------------------------------------------------------------
consensus_15846#0      GGCTGCCGTCCAAGCAGCAATCTCCACCTGCTGCTCTTCGTCTTGCCTGTCCCGGCCGCC 120
consensus_15846#3      ------------------------------------------------------------
                                                                                   

consensus_15846#1      ------------------------------------------------------------
consensus_15846#2      ------------------------------------------------------------
consensus_15846#0      ACCGCCGTTCGCGAGGAGGCGGCGCTTCAAGGTCACGGCCATGGCTCCCCAGAAGAAGGT 180
consensus_15846#3      ------------------------------------------------------------
                                                                                   

consensus_15846#1      ------------------------------------------------------------
consensus_15846#2      ----------------------------------------------------------GG 2
consensus_15846#0      GAACAGGTACGACGAGAAGTGGTCGAAGCAGTGGTTCGGGGCGGGGATATTCGCGGAGGG 240
consensus_15846#3      ------------------------------------------------------------
                                                                                   

consensus_15846#1      ------------------------TTTCAAGNAA--CTGGAGAGNCGGAAGGGTTCT--G 32
consensus_15846#2      GACCAAGGAAGTTGAGTGGACCTGTTCCAAAGAAACCTGGAAGAGCCGAAAAGTTCTTGA 62
consensus_15846#0      GAGCGAGGAGGTGGAGGTGGACGTGTTCAAGAAG--CTGGAGAGGCGGAAG-GTGCT--G 295
consensus_15846#3      ------------------------------------------------------------
                                                                                   

consensus_15846#1      ACCACCGGTGGAG--AAGCCCGG---CTGNCTGTCCACGGGCC-GGAGGAGCTCGGC-GT 85
consensus_15846#2      ACCACCGGTTGAAGAAAGCCCGGGCCTTGCCTGTCCCAGGGCCCGGAGAAGCTCGGCCGT 122
consensus_15846#0      AGCAC-GGTGGAG--AAGGCCGGG--CTGC-TGTCC-AGGGC--GGAGGAGCTCGGC-GT 345
consensus_15846#3      -CCGTCCAAGCAGCAATATCCACCTGCTGCTCTTCGTCTTGCC-----TGNNCCGGCCGC 54
                         *        *   *   **      **    **     **           **** * 

consensus_15846#1      CACTGCTCTCCTCGCTC---GAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCC 142
consensus_15846#2      CACAGCTCTCCTCGCCTTCAGAGGAGCTCGGCCCTCCCTCTCAAGCC-AGGACCTCGGCC 181
consensus_15846#0      CAC-GCTCTCCTCGCTC---GAGGAGCTCGGCCTCCTCTCCAAGGCCGAGGACCTCGGCC 401
consensus_15846#3      CACCGCCGTTCGCG-------AGGAGGCGG-----CGCTTCAAGGTACACGCCCATGGGC 102
                       *** **  * * **       *****   *     * **   * *   * * **  ** *

consensus_15846#1      TCCTCAGCCTCGTCGAGGCCGCCCCTGCCGCCTCCCCCGACGCCCTCGCCTCCAGTCTCG 202
consensus_15846#2      TCCTCAGCCTCGTCGAGCCC--CGCCGCCGCCTCCCCCGACGCCCTCGCCTCC-GTCTCG 238
consensus_15846#0      TCCTCAGCCTCGTCGAGGCCGCCGCCGCCGCCTCCCCCGACGCCCTCGCCTCC-GTCTCG 460
consensus_15846#3      NNCTCAG----AGAGAAGGTAGCACAGGCGACGGCGA-GAAGTGGTCCGATGCAGTGGTT 157
                         *****       **      * * * ** *  *   ** *   **   * * **    

consensus_15846#1      CATCCCGCTCCTCGTCNGCCAGCCATCGCCGCCGTCGTCCTCGTCCCCGACG-ACTCC-- 259
consensus_15846#2      C-TCCCGCTCCTCGTCCC---GCCATCGCCGCCGTCGTCCTCGTCCCCGACG-ACTCCA- 292
consensus_15846#0      C-TCCCGCTCCTCGTCGCC--GCCATCGCCGCCGTCGTCCTCGTCCCCGACG-ACTCC-- 514
consensus_15846#3      CGGGGCGGGGATATTTGGTGGAGGAGCAGCGAGGTAAGTGGTAGGTAGGACGTGCTTCAA 217
                       *    **    *  *         * *  **  **             ****  ** *  

consensus_15846#1      GCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGC-CGCCGCCGCCGG 318
consensus_15846#2      GCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGCACGCCGCCGCCGG 352
consensus_15846#0      GCCGCCCTCGTCGCGCTCCAGGCCGTCCTCGCCGCCGTCCTCCTCGC-CGCCGCCGCCGG 573
consensus_15846#3      GAAGCTGGAGAGGCGGAAGTTGCTGAGCACGGTGGAGACGGCCGGGC-TGCTGTCCAGGG 276
                       *  **    *  ***      ** *  * **  *  * *  **  **  ** * *   **

consensus_15846#1      CCTCTTCG-TCGGCTCCGTCGTCCTCGCCGGCCTNCCAGGAGTCCGACTGATCGTCGCCG 377
consensus_15846#2      CCTCTTCG-TCGGCTCCGTCGTCCTCGCCGGCCTGC-AGGAGTCCGACTGATCGTCCC-- 408
consensus_15846#0      CCTCTTCG-TCGGCTCCGTCGTCCTCGCCGGCCTGC-AGGAGTCCGACTGATCGTCGCCG 631
consensus_15846#3      CGGAGGAGCTCGGCGTCA-CGCTCTCCTCG---CTCGAGGAGCTCGGCCTCCACTCCAAG 332
                       *      * *****  *  **  ***  **     * *****  ** *      **    

consensus_15846#1      CAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAG 437
consensus_15846#2      CAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAG 468
consensus_15846#0      CAGGGTTTGATGATCACTAGGACATGTACGTATTAATCACCGTATTTATACAGTGCTTAG 691
consensus_15846#3      GCCGAGGCCTCGCCTCCTCAGCCTCGCGAGCCGCCGCCGCCGCTCCCCGAGCCTGCTC-- 390
                          *       *    **  * *  *   *       * ***       *   ****   

consensus_15846#1      TGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCCAAGGAGTN 497
consensus_15846#2      TGTGTTAAAAA------------------------------------------------- 479
consensus_15846#0      TGTGTTACTAGTATCGACTGGTTCTCGAGATGAAAATTTGTTGTAAATTTCAAGGAGTTT 751
consensus_15846#3      ------------------------------------------------------------
                                                                                   

consensus_15846#1      CNCCGGCTGCAAACAAAAAAAAAA--------------------------------- 521
consensus_15846#2      ---------------------------------------------------------
consensus_15846#0      CA--GGCTGCAATGGATGATTGTGTAATTAGGAACGGGAAAAAAAAAAAAAAAAAAA 806
consensus_15846#3      ---------------------------------------------------------
                                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)