cluster # 1587

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Oryza sativa
cluster # 1587 cluster # 1587 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1587#0 length = 999 sequences # 1

consensus_1587#1 length = 667 sequences # 1

consensusID : consensus_1587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 999
fasta sequence

                              [AGCTTCTCCGACAAATGGCGTCACGGGTCGTCGTCCTCCTCGTGGTTGCGGCGGCGTGCGTGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCTTGCAACACCGGCAGCCTCATCGATATCGCCACCTCCCCCGCCTTTCCAAACGCGGACGTGGAGCTGAGGTGCGCGGGGAAGCTGGTGGTGGTGGCTTACTACTAACAGTAACGGTTTTTTTATGTTGGTTGCAATCCTGCCCAGCGGAACGACTTATCTAATATGTTATCTGCCTTCCCCACCACTCTGTACTCCTGTCTTTCTCTTCGCCTCTTTCTCTTCTTACCCTTCTTCTGACTGTTTTTTCAATTTGTGCTAGATCTTTTCTCTTGCTTTTGTTTCTCTTTGTTTCTTTTCTGTTCTTAGTCTCTACTATTTTTTATCTCTTCTTTGTTTTGTATGTCATTCATATTTTGTTTTTTTGTTTTTCTTTTGCTTTTCTTCTGTCTTCTATCATCTCTTTTCTCTTCTACGGGGTTGTTCATCTCTTTATTTGTTTATTTTTTTCGGCTTTCCGCTCGTCTGTTTTTTATTTTCTGTCGTTTCCCCTCTCAACTTTATATTGTTTAGTCTCTGTTGAGAACTGTCGGCGTTAGTTCCTTATGTGTCTGTCCTGCGCGTGGCCCTTCAGTTACCCTTTCTTGCTCGCCGCCATCTGCTGTGTGGGTATATGGTTTTGATCAACTGCTTTCTGCTTCGCTCCATTTTTTTACTACTTTTTTTTTCTTTTTTTCTTTTTTCTCCTTTTCTATGCCTGACTTCTCCCCTCTCCCCCGTTTCTTTCTGCCCGTTTCCCTCACCTCACTTCTTTTTATATTATATTATTAATCTCTTAGTATTTTCCCGTTTTTCTTTCTTTTTTACCGCTAATCTTCCTGTCTCGTTCGTTGGTGTTGTGTTGTTTTTATCTGTGGTTATTGTAGTACGCTCGATTTGGTGGACT]

[+] EMBL BE040977             [AGCTTCTCCGACAAATGGCGTCACGGGTCGTCGTCCTCCTCGTGGTTGCGGCGGCGTGCGTGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCTTGCAACACCGGCAGCCTCATCGATATCGCCACCTCCCCCGCCTTTCCAAACGCGGACGTGGAGCTGAGGTGCGCGGGGAAGCTGGTGGTGGTGGCTTACTACTAACAGTAACGGTTTTTTTATGTTGGTTGCAATCCTGCCCAGCGGAACGACTTATCTAATATGTTATCTGCCTTCCCCACCACTCTGTACTCCTGTCTTTCTCTTCGCCTCTTTCTCTTCTTACCCTTCTTCTGACTGTTTTTTCAATTTGTGCTAGATCTTTTCTCTTGCTTTTGTTTCTCTTTGTTTCTTTTCTGTTCTTAGTCTCTACTATTTTTTATCTCTTCTTTGTTTTGTATGTCATTCATATTTTGTTTTTTTGTTTTTCTTTTGCTTTTCTTCTGTCTTCTATCATCTCTTTTCTCTTCTACGGGGTTGTTCATCTCTTTATTTGTTTATTTTTTTCGGCTTTCCGCTCGTCTGTTTTTTATTTTCTGTCGTTTCCCCTCTCAACTTTATATTGTTTAGTCTCTGTTGAGAACTGTCGGCGTTAGTTCCTTATGTGTCTGTCCTGCGCGTGGCCCTTCAGTTACCCTTTCTTGCTCGCCGCCATCTGCTGTGTGGGTATATGGTTTTGATCAACTGCTTTCTGCTTCGCTCCATTTTTTTACTACTTTTTTTTTCTTTTTTTCTTTTTTCTCCTTTTCTATGCCTGACTTCTCCCCTCTCCCCCGTTTCTTTCTGCCCGTTTCCCTCACCTCACTTCTTTTTATATTATATTATTAATCTCTTAGTATTTTCCCGTTTTTCTTTCTTTTTTACCGCTAATCTTCCTGTCTCGTTCGTTGGTGTTGTGTTGTTTTTATCTGTGGTTATTGTAGTACGCTCGATTTGGTGGACT]




>consensus_1587#0
AGCTTCTCCGACAAATGGCGTCACGGGTCGTCGTCCTCCTCGTGGTTGCGGCGGCGTGCG
TGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCTTGCA
ACACCGGCAGCCTCATCGATATCGCCACCTCCCCCGCCTTTCCAAACGCGGACGTGGAGC
TGAGGTGCGCGGGGAAGCTGGTGGTGGTGGCTTACTACTAACAGTAACGGTTTTTTTATG
TTGGTTGCAATCCTGCCCAGCGGAACGACTTATCTAATATGTTATCTGCCTTCCCCACCA
CTCTGTACTCCTGTCTTTCTCTTCGCCTCTTTCTCTTCTTACCCTTCTTCTGACTGTTTT
TTCAATTTGTGCTAGATCTTTTCTCTTGCTTTTGTTTCTCTTTGTTTCTTTTCTGTTCTT
AGTCTCTACTATTTTTTATCTCTTCTTTGTTTTGTATGTCATTCATATTTTGTTTTTTTG
TTTTTCTTTTGCTTTTCTTCTGTCTTCTATCATCTCTTTTCTCTTCTACGGGGTTGTTCA
TCTCTTTATTTGTTTATTTTTTTCGGCTTTCCGCTCGTCTGTTTTTTATTTTCTGTCGTT
TCCCCTCTCAACTTTATATTGTTTAGTCTCTGTTGAGAACTGTCGGCGTTAGTTCCTTAT
GTGTCTGTCCTGCGCGTGGCCCTTCAGTTACCCTTTCTTGCTCGCCGCCATCTGCTGTGT
GGGTATATGGTTTTGATCAACTGCTTTCTGCTTCGCTCCATTTTTTTACTACTTTTTTTT
TCTTTTTTTCTTTTTTCTCCTTTTCTATGCCTGACTTCTCCCCTCTCCCCCGTTTCTTTC
TGCCCGTTTCCCTCACCTCACTTCTTTTTATATTATATTATTAATCTCTTAGTATTTTCC
CGTTTTTCTTTCTTTTTTACCGCTAATCTTCCTGTCTCGTTCGTTGGTGTTGTGTTGTTT
TTATCTGTGGTTATTGTAGTACGCTCGATTTGGTGGACT

consensusID : consensus_1587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 667
fasta sequence

                              [GGCGTCACGGGTCGTCGTCCTCCTCGTGGTCGCGGCGGCGTGCGTGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCCTGCAACACCGGCAGCCTCATCGATATCGCCACGTCCCCCGCCTTCCCAAACGCGGACGTGGAGCTGAGGTGCGCGGGGAAGCTGGTGGCGGGGGCGACGACGAACAGCAACGGGTCGTTCGCGATGGAGGCGGACCTGACGAGCGGGCTGGCGATGCTCATCGGCGGGTGCAAGCTGGTGGTGGACACGCCGCTGATCAAGTGCGACGCCAACCTGCCGGCGGCGGGGAGCCTCGTCTCCTACCTGCAGGGCCCGCTCACCAGGCTGCTCGGCGGCATCTTCCGCCTCTTCCCCGCCGGCTTCTCCTTCCACGCCCACTAATATACAACATCTCATTATGCAAATCTCGATTTGGTCCTATCTTGTCTATGGAAACTGGATGTACCGTAATTTCTACTAGTAGAATACTAGTAGTACGTAGTACTGATCTCATCTGTATCGCCTGTACGCTGAAGCTCATTGGCCTGCTTAGAGCAGGAGTTGCGAATGTTTTCTTGGTCAGATGAATGCTGTATGGGTCTAAAATTACTGTTACCTTGTTCTGAACCTAAGTTAATGTCAATGATC]

[+] EMBL AK119672             [GGCGTCACGGGTCGTCGTCCTCCTCGTGGTCGCGGCGGCGTGCGTGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCCTGCAACACCGGCAGCCTCATCGATATCGCCACGTCCCCCGCCTTCCCAAACGCGGACGTGGAGCTGAGGTGCGCGGGGAAGCTGGTGGCGGGGGCGACGACGAACAGCAACGGGTCGTTCGCGATGGAGGCGGACCTGACGAGCGGGCTGGCGATGCTCATCGGCGGGTGCAAGCTGGTGGTGGACACGCCGCTGATCAAGTGCGACGCCAACCTGCCGGCGGCGGGGAGCCTCGTCTCCTACCTGCAGGGCCCGCTCACCAGGCTGCTCGGCGGCATCTTCCGCCTCTTCCCCGCCGGCTTCTCCTTCCACGCCCACTAATATACAACATCTCATTATGCAAATCTCGATTTGGTCCTATCTTGTCTATGGAAACTGGATGTACCGTAATTTCTACTAGTAGAATACTAGTAGTACGTAGTACTGATCTCATCTGTATCGCCTGTACGCTGAAGCTCATTGGCCTGCTTAGAGCAGGAGTTGCGAATGTTTTCTTGGTCAGATGAATGCTGTATGGGTCTAAAATTACTGTTACCTTGTTCTGAACCTAAGTTAATGTCAATGATC]




>consensus_1587#1
GGCGTCACGGGTCGTCGTCCTCCTCGTGGTCGCGGCGGCGTGCGTGCTCGGCGCCGCAGA
CGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCCTGCAACACCGGCAGCCTCAT
CGATATCGCCACGTCCCCCGCCTTCCCAAACGCGGACGTGGAGCTGAGGTGCGCGGGGAA
GCTGGTGGCGGGGGCGACGACGAACAGCAACGGGTCGTTCGCGATGGAGGCGGACCTGAC
GAGCGGGCTGGCGATGCTCATCGGCGGGTGCAAGCTGGTGGTGGACACGCCGCTGATCAA
GTGCGACGCCAACCTGCCGGCGGCGGGGAGCCTCGTCTCCTACCTGCAGGGCCCGCTCAC
CAGGCTGCTCGGCGGCATCTTCCGCCTCTTCCCCGCCGGCTTCTCCTTCCACGCCCACTA
ATATACAACATCTCATTATGCAAATCTCGATTTGGTCCTATCTTGTCTATGGAAACTGGA
TGTACCGTAATTTCTACTAGTAGAATACTAGTAGTACGTAGTACTGATCTCATCTGTATC
GCCTGTACGCTGAAGCTCATTGGCCTGCTTAGAGCAGGAGTTGCGAATGTTTTCTTGGTC
AGATGAATGCTGTATGGGTCTAAAATTACTGTTACCTTGTTCTGAACCTAAGTTAATGTC
AATGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1587#0      AGCTTCTCCGACAAATGGCGTCACGGGTCGTCGTCCTCCTCGTGGTTGCGGCGGCGTGCG 60
consensus_1587#1      ----------------GGCGTCACGGGTCGTCGTCCTCCTCGTGGTCGCGGCGGCGTGCG 44
                                      ****************************** *************

consensus_1587#0      TGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCTTGCA 120
consensus_1587#1      TGCTCGGCGCCGCAGACGCGAAGCTCGGCAGGCTGGTCGTCACCGGCGTCGTGCCCTGCA 104
                      ******************************************************* ****

consensus_1587#0      ACACCGGCAGCCTCATCGATATCGCCACCTCCCCCGCCTTTCCAAACGCGGACGTGGAGC 180
consensus_1587#1      ACACCGGCAGCCTCATCGATATCGCCACGTCCCCCGCCTTCCCAAACGCGGACGTGGAGC 164
                      **************************** *********** *******************

consensus_1587#0      TGAGGTGCGCGGGGAAGCTGGTGGTGGTGGCTTACTACTAACAGTAACGGTTTTTTTATG 240
consensus_1587#1      TGAGGTGCGCGGGGAAGCTGGTGGCGGGGGCG-ACGACGAACAGCAACGGGTCGTTCGCG 223
                      ************************ ** ***  ** ** ***** ***** *  **   *

consensus_1587#0      TTGGTTGCAATCCTGCCCAGCGGAACGACTTATCTAATATGTTATCTGCCTTCCCCACCA 300
consensus_1587#1      ATGGAGGCGGACCTGACGAGCGGGCTGGC------GATGC-TCATCGGCGGGTGCAAGCT 276
                       ***  **   **** * *****   * *       **   * *** **     * * * 

consensus_1587#0      CTCTGTACTCCTGTCTTTCTCTTCGCCTCTTTCTCTTCTTACCCTTCTTCTGACTGTTTT 360
consensus_1587#1      GGTGGTGGACACGCCG--CTGATCAAGTGCGACGCCAACCTGCCGGCGGCGGGGAGCCTC 334
                          **   *  * *   **  **   *    * *       **  *  * *   *  * 

consensus_1587#0      TTCAATT-TGTGCTAGATCTTTTCTCTTGCTTTTGTTTCTCTTTGTTTCTTTTCTGTTCT 419
consensus_1587#1      GTCTCCTACCTGCAGGGCCCGCTCACCAG-----GCTGCTCGGCGGCATCTTCCGCCTCT 389
                       **   *   ***  *  *   ** *  *     * * ***   *     ** *   ***

consensus_1587#0      TAGTCTCTACTATTTTTTATCTCTTCTTTGTTTTGTATGTCATTCATATTTTGTTTTTTT 479
consensus_1587#1      T---CCCCGCCGGCTTCTCCTTCCACGCCCACTAATATAC----AACATCTCATTATGCA 442
                      *   * *  *    ** *   **  *      *  ***       * ** *  ** *   

consensus_1587#0      GTTTTTCTTTTGCTTTTCTTCTGTCTTCTATCATCTCTTTTCTCTTCTACGGGGTTGTTC 539
consensus_1587#1      AATCTCGATTTGGTCCTATCTTGTCTATGGAAACT---------------GGATGTACCG 487
                        * *   **** *  * *  *****      *                 **   *    

consensus_1587#0      ATCTCTTTATTTGTTTATTTTTTTCGGCTTTCCGCTCGTCTGTTTTTTATTTTCTGTCGT 599
consensus_1587#1      TAATTTCTACTAGTAGAATACT---AGTAGTACGTAGTACTGATCTC--ATCTGTATCGC 542
                         * * ** * **  * *  *    *   * **     *** * *    * * * *** 

consensus_1587#0      TTCCCCTCTCAACTTTATATTGTTTAGTCTCTGTTGAGAACTGTCGGCGTTAGTTCCTTA 659
consensus_1587#1      CTGTACGCTGAAGCTCA--TTGGCCTGCTTAGAGCAGGAGTTGCGAATGTT---TTCTTG 597
                       *   * ** **  * *  ***    *  *       **  **     ***   * *** 

consensus_1587#0      TGTGTCTGTCCTGCGCGTGGCCCTTCAGTTACCCTTTCTTGCTCGCCGCCATCTGCTGTG 719
consensus_1587#1      GTCAGATGAATGCTGTATGGGTCTAAAATTACTGTTAC---CTTGTTCTGAACCTAAGTT 654
                            **      *  ***  **  * ****  ** *   ** *     * *    ** 

consensus_1587#0      TGGGTATATGGTTTTGATCAACTGCTTTCTGCTTCGCTCCATTTTTTTACTACTTTTTTT 779
consensus_1587#1      AATGTCAATGATC----------------------------------------------- 667
                         **  *** *                                                

consensus_1587#0      TTCTTTTTTTCTTTTTTCTCCTTTTCTATGCCTGACTTCTCCCCTCTCCCCCGTTTCTTT 839
consensus_1587#1      ------------------------------------------------------------
                                                                                  

consensus_1587#0      CTGCCCGTTTCCCTCACCTCACTTCTTTTTATATTATATTATTAATCTCTTAGTATTTTC 899
consensus_1587#1      ------------------------------------------------------------
                                                                                  

consensus_1587#0      CCGTTTTTCTTTCTTTTTTACCGCTAATCTTCCTGTCTCGTTCGTTGGTGTTGTGTTGTT 959
consensus_1587#1      ------------------------------------------------------------
                                                                                  

consensus_1587#0      TTTATCTGTGGTTATTGTAGTACGCTCGATTTGGTGGACT 999
consensus_1587#1      ----------------------------------------