|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 1370 fasta sequence
[TGGACTGAAGGAGTAGAAAGCACATCTCTCTCTCTCGCTTCTGCCACTGCTGGCTGTGCTGCTTCCCTAGCTCCTCGGTTGGATCAAAGAGAAGAGAAGAGAAGAGTTAATGCTGATGGCCTCCGAGGCGTGGCTGTCGCCGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGCAACCTCCACG-CGT-GGGCGGCGCCTCCGCCTTGGCGCCACCGATCAGCAGCAGCAGCAAGGCAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACGGGAAGGGGAAGAAGGCCGAGAAGAGGTCGCTGGGTGAGATGGAGCAGGAGTTCCTTCAGGCTCTTCAGGCCTTCTACTACGACCAGAAGGCCATCATGTCCAACGA-GGAGTTCGACAACCTCAAGGAGGAGCTCATGTGGGAAGGCAGCAGCGTTGTCATGCTAAGCCCTGACGAACAACGCCTGCTCGAAGCCTCCATGGCCTATGCTGCCGGCAACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGCCGAAAGGTGTACAGTGATTTGACCGTTGACTACCTAAAGATGTTCCTGCTAAATGTTCCAGCAACTACTCTTGCTCTAGGACTGTTCTTCTTCATCGATGAGTTGACTGGCTTTGAGATCAACATAT-TCCAGCTG-CCAGA-GCCTTTCGGTTTCATTT-TCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTGTAGCA-CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCA-TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA-GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATA-CTACAGTAAGAAATGTAGATCGACTTCTATACTACTAA-CTATTAAGCGCTGTTGTGTACAGTATATA-AAATGTAGTA-CATACATGTTTACTGATATCTGACTCAACTGAAATACTACACACATATGTGTGTTGGAGATAAAAAAAAAA]
[+] EMBL CF308128 [TGGACTGAAGGAGTAGAAAGCACATCTCTCTCTCTCGCTTCTGCCACTGCTGGCTGTGCTGCTTCCCTAGCTCCTCGGTTGGATCAAAGAGAAGAGAAGAGAAGAGTTAATGCTGATGGCCTCCGAGGCGTGGCTGTCGCCGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGCAACCTCCACG CGT GGGCGGCGCCTCCGCCTTGGCGCCACCGATCAGCAGCAGCAGCAAGGCAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACGGGAAGGGGAAGAAGGCCGAGAAGAGGTCGCTGGGTGAGATGGAGCAGGAGTTCCTTCAGGCTCTTCAGGCCTTCTACTACGACCAGAAGGCCATCATGTCCAACGAGGGAGTTCGACAACCTCAAGGAGGAGCTCATGTGGGAAGGCAGCAGCGTTGTCATGCTAAGCCCTGACGAACAACGC ]
[+] EMBL AK098951 [ CTCTCTCTCGCTTCTGCCACTGCTGGCTGTGCTGCTTCCCTAGCTCCTCGGTTGGATCAAAGAGAAGAGAAGAGAAGAGTTAATGCTGATGGCCTCCGAGGCGTGGCTGTCGCCGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGCAACCTCCACG CGT GGGCGGCGCCTCCGCCTTGGCGCCACCGATCAGCAGCAGCAGCAAGGCAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACGGGAAGGGGAAGAAGGCCGAGAAGAGGTCGCTGGGTGAGATGGAGCAGGAGTTCCTTCAGGCTCTTCAGGCCTTCTACTACGACCAGAAGGCCATCATGTCCAACGA GGAGTTCGACAACCTCAAGGAGGAGCTCATGTGGGAAGGCAGCAGCGTTGTCATGCTAAGCCCTGACGAACAACGCCTGCTCGAAGCCTCCATGGCCTATGCTGCCGGCAACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGCCGAAAGGTGTACAGTGATTTGACCGTTGACTACCTAAAGATGTTCCTGCTAAATGTTCCAGCAACTACTCTTGCTCTAGGACTGTTCTTCTTCATCGATGAGTTGACTGGCTTTGAGATCAACATAT TCCAGCTG CCAGA GCCTTTCGGTTTCATTT TCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTGTAGCA CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCA TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTATACTACTAA CTATTAAGCGCTGTTGTGTACAGTATATA AAATGTAGTA CATACATGTTTACTGATATCTGACTCAACTGAAATACTACACACATATGTG ]
[+] EMBL CF292947 [ CTCTCTCTCGCTTCTGCCACTGCTGGCTGTGCTGCTTCCCTAGCTCCTCGGTTGGATCAAAGAGAAGAGAAGAGAAGAGTTAATGCTGATGGCCTCCGAGGCGTGGCTGTCACCGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGCAACCTCCACGCCGT GGGCGGCGCCTCCGCCTTGGCGCCACCGATCAGCAGCAGCAGCAAGGCAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACGGGAAGGGGAAGAAGGCCGAGAAGAGGTCGCTGGGT ]
[+] EMBL CF336508 [ CTCTCTCTCGCTTCTGCCACTGCTGGCTGTGCTGCTTCCCTAGCTCCTCGGTTGGATCAAAGAGAAGAGAAGAGAAGAGTTAATGCTGATGGCCTCCGAGGCGTGGCTGTCGCCGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCA ]
[+] EMBL CF310165 [ CTCTCTCGCTTCTGCCACTGCTGGCTGTGCTGCTTCCCTAGCTCCTCGGTTGGATCAAAGAGAAGAGAAGAGAAGAGTTAATGCTGATGGCCTCCGAGGCGTGGCTGTCGCCGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGCAACCTCCACGCCGT GGGCGGCGCCTCCGCCTTGGCGCCACCGATCAGCAGCAGCAGCAAGGCAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACGGGAAGGGGAAGAAGGCCGAGAAGAGGTCGCTGGGTGAGATGGAGCAGGAGTTCCTTCAGGCTCTTCAGGCCTTCTACTACGACCAGAAGGCCATCATGTCCAACGA GGAGTTCGACAACCTCAAGGAGGAGCTCATGTGGGAAGGCAGCAGCGTTGTCATGCTAAGCCCTGACGAACAACGCCTGCTCGAAGCCTCCATGGCCTATGCTGCCGGCAACCCCATCATGTCTGACGCTGAATT ]
[+] EMBL AK062137 [ TCTCTCGCTTCTGCCACTGCTGGCTGTGCTGCTTCCCTAGCTCCTCGGTTGGATCAAAGAGAAGAGAAGAGAAGAGTTAATGCTGATGGCCTCCGAGGCGTGGCTGTCGCCGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGCAACCTCCACG CGT GGGCGGCGCCTCCGCCTTGGCGCCACCGATCAGCAGCAGCAGCAAGGCAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACGGGAAGGGGAAGAAGGCCGAGAAGAGGTCGCTGGGTGAGATGGAGCAGGAGTTCCTTCAGGCTCTTCAGGCCTTCTACTACGACCAGAAGGCCATCATGTCCAACGA GGAGTTCGACAACCTCAAGGAGGAGCTCATGTGGGAAGGCAGCAGCGTTGTCATGCTAAGCCCTGACGAACAACGCCTGCTCGAAGCCTCCATGGCCTATGCTGCCGGCAACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGCCGAAAGGTGTACAGTGATTTGACCGTTGACTACCTAAAGATGTTCCTGCTAAATGTTCCAGCAACTACTCTTGCTCTAGGACTGTTCTTCTTCATCGATGAGTTGACTGGCTTTGAGATCAACATAT TCCAGCTG CCAGA GCCTTTCGGTTTCATCT TCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTGTAGCA CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCA TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTATACTACTAA CTATTAAGCGCTGTTGCGTACAGTATATA AAATGTAGTA CATACATGTTTACTGATATCTGACTCAACTGAAATACTACACACATATGTGTGTTGGAGATAGAAActgt ]
[+] EMBL CF317701 [ CTCTCGCTTCTGCCACTGCTGGCTGTGCTGCTTCCCTAGCTCCTCGGTTGGATCAAAGAGAAGAGAAGAGAAGAGTTAATGCTGATGGCCTCCGAGGCGTGGCTGTCGCCGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGCAACCTCCACG CGTGGGGCGGCGCCTCCGCCTTGGCGCCACCGATCAGCAGCAGCAGCAAGGCAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACG ]
[+] EMBL AU030311 [ GGCTGTGCTGCTTCCCTAGCTCCTCGGTTGGATCAAAGAGAAGAGAAGAGAAGAGTTAATGCTGATGGCCTCCGAGGCGTGGCTGTCGCCGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGCAACCTCCACG CGT GGGCGGCG CTCCGCCTTGGCGCCACCGATCAGCAGCAGCAGCAAGGCAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACGGGAAGGGGAAGAANGCCGAGAAGAGGTCGCTGGGTGAGATGGA CANGAGTT CTTCA GCTCTTCAGGC ]
[+] EMBL CB684214 [ TCCGAGGCGTGGCTGTCGCCGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGCAACCTCCACG CGT GGGCGGCGCCTCCGCCTTGGCGCCACCGATCAGCAGCAGCAGCAAGGCAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACGGGAAGGGGAAGAAGGCCGAGAAGAGGTCGCTGGGTGAGATGGAGCAGGAGTTCCTTCAGGCTCTTCAGGCCTTCTACTACGACCAGAAGGCCATCATGTCCAACGA GGAGTTCGACAACCTCAAGGAGGAGCTCATGTGGGAAGGCAGCAGCGTTGTCATGCTAAGCCCTGACGAACAACGCCTGCTCGAAGCCTCCATGGCCTATGCTGCCGGCAACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGCCGAAAGGTGTACAGTGATTTGACCGTTGACTACCTAAAGATGTTCCTGCTAAATGTTCCAGCAACTACTCTTGCTCTAGGACTGTTCTTCTTCATCGATGAGTTGACTGGCTTTGAGATCAACATAT TCCAGCTG CCAGA GCCTTTCGGATTCATTT TCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAAC ]
[+] EMBL CF326480 [ CGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGCAACCTCCACG CGT GGGCGGCGCCTCCGCCTTGGCGCCTTCGATCAGCAGCAGCAGCAAGGCAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACGGGAAGGGGAAGAAGGCCGAGAAGAGGTCGCTGGGTGAGATGGAGCAGGAGTTCCTTCAGGCTCTTCAGGCCTTCTACTACGACCAGAAGGCCATCATGTCCAACGA GGAGTTCGACAACCTCAAGGAGGAGCTCATGTGGGAAGGCAGCAGCGTTGTCATGCTAAGCCCTGACGAACAACGCCTGCTCGAAGCCTCCATGGCCTATGCTGCCGGCAACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGCCGAAAGGTGTACAGTGATTTGACCGTTGACTACCTAAAGATGTTCCTGCTAAATGTTCCAGCAACTACTCTTGCTCTAGGACTGTTCTTCTTCATCGATGA ]
[+] EMBL CF325269 [ CGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGCCGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGCAACCTCCACG CGT GGGCGGCGCCTCCGCCTTGGCGCCACCGATCAGCAGCAGCAGCAAGGCAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACGGGAAGGGGAAGAAGGCCGAGAAGAGGTCGCTGGGTGAGATGGAGC ]
[-] EMBL CB684215 [ AGCAGCGTTGTCATGCTAAGCCCTGACGAACAACGCCTGCTCGAAGCCTCCATGGCCTATGCTGCCGGCAACCCCATCATGTCTGACGCTGAATTCGACCAACTCAAACTCAGATTGAAGAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAGGTGCAGTCTACGCAGCCGAAAGGTGTACAGTGATTTGACCGTTGACTACCTAAAGATGTTCCTGCTAAATGTTCCAGCAACTACTCTTGCTCTAGGACTGTTCTTCTTCATCGATGAGTTGACTGGCTTTGAGATCAACATAT TCCAGCTG CCAGA GCCTTTCGGTTTCATTT TCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTGTAGCA CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCA TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTATACTACTAA CTATTAAGCGCTGTTG AAAGAGTATATA AAATGTAGTA CATACATGTTTACT ]
[+] EMBL CB678687 [ AGGTGCCTTCTACGCAGCCGAAAGGTGTACAGTGATTTGACCGTTGACTACCTAAAGATGTTCCTGCTAAATGTTCCAGCAACTACTCTTGCTCTAGGACTGTTCTTCTTCATCGATGAGTTGACTGGCTTTGAGATCAACATAT TCCAGCTG CCAGA GCCTTTCAGTTTCATTT TCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTATTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTGTAGCA CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCA TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATA CTACAG ]
[+] EMBL CB680704 [ AACA AA CCCTGCTG CCAGA GCCTTTCGGTTTCATTT TCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTGTAGCA CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCA TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTAT ]
[+] EMBL BM038282 [ ACATATNTCCACCTGCCCAGACCCCTTTCGGTTTCATTTGTCACATGGTTT CTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAA GGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACCAAGTGAAATGTGCAGATTGTAGCACCGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCACTCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCACGATGGAGAGATGC AAC AGGAGCTGATCCGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCAC AATTGCATGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTATACTACTAA CTATTAAGCGCTGTTGTGTACAGTATATACCCANCTAGTA CATACATGTTTACTGAaaaaaa ]
[-] EMBL CF337158 [ GA GCCTTTCGGTTTCATTT TCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTGTAGCA CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCA TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTATACTAaaaa a ]
[-] EMBL CF308129 [ A GCCTTTCGGTTTCATTT TCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTGTAGCA CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCA TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTATACTACTAA CTATTAAGCGCTGTTATGTACAGTATATA AAATGTAGTA CATACATGTTTACTGATATCTGACTCAACTGAAATACTACACACATATGTGTGTTGGAGATAAAAAAAAA ]
[+] EMBL AU030312 [ TCATTT TCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTGTAGCA CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCA TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTATACTACTAA CTATTAAGCGCTGTTGTGTACAGTATATA AAATGTAGTA CATACATGTTTACTGATATCTGACTCAACTGAAATACTACACACATATGTGTGTTGGAGAAAAAAAAAA ]
[-] EMBL CF336509 [ TT TCACATGGTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAACGACTTCTTAATCCTCAAGGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTTCGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAGACAAACAAAGTGAAATGTGCAGATTGTAGCA CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCA TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTATACTACTAA CTATTAAGCGCTGTTGTGTACAGTATATA AAATGTAGTA CATACATGTTTACTGATATCTGACTCAACTGAAATACTACACACATATGTGTGTTGGAGATAAAAAAAA ]
[-] EMBL CF310166 [ CTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTGTAGCA CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAATCA TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTATACTACTAA CTATTAAGCGCTGTTGTGTACAGTATATA AAATGTAGTA CATACATGTTTACTGATATCTGACTCAACTGAAATACTACACACATATGTGTGTTGGAGATAGAAAAAAAA]
[-] EMBL CF292948 [ TGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTGTAGCA CGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCA TCGCAATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCA GATGGAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCACGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTATACTACTAA CTATTAAGCGCTGTTGTGTACAGTATATA AAATGTAGTA CATACATGTTTACTGAaaaaaa ]
[-] EMBL BI306530 [ cAGAGATGCAAACAAGGAGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCCCAAATTGCATGCAGAGTGTATATATA CTACAGTAAGAAATGTAGATCGACTTCTATACTACTAA CTATTAAGCGCTGTTGTGTACAGTATATA AAATGTAGTA CATACATGTTTACTGATATCTG ]
[+] EMBL BI809987 [ AAC AGGAGGTGATCAGGTAGGAAAC AC AAT AAATGGAATTATTGTAACGGATGGGTGTTCAC AATTGCAT CAGAGTGTATATATACCTACCGTAAGAAATGTAGATCGACTTCTATACTACTAACCTATTAAGCCCTGTTGTGTAC GTATATA AAATGTAGTACCATACATGTTTACTGATATCTGACTC ACTGAAATACTACACACATATGTGTGTTGGAGATAAAAAA ]
consensusID : consensus_15872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence
[AGAGGCCGAGACAAGGGGGTGGTCAGGTAGGAACCACCAAATAAAATGGAATTTTTGTAACGGATGGGTGTTCCCCACCCGCCTGCAGAGGGTATATTTTCTCCCGTAAGAAATGTAGATCGGCTTCTATACTACTAACTATTAAGCGCTGTTGTGTCCCGTATATAAAATGTAGTACATCCATGTTTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761035 [AGAGGCCGAGACAAGGGGGTGGTCAGGTAGGAACCACCAAATAAAATGGAATTTTTGTAACGGATGGGTGTTCCCCACCCGCCTGCAGAGGGTATATTTTCTCCCGTAAGAAATGTAGATCGGCTTCTATACTACTAACTATTAAGCGCTGTTGTGTCCCGTATATAAAATGTAGTACATCCATGTTTTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15872#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence
[AGAGGACGAGACAAGGGGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATACTACAGTAAGAAATGTAGATCGACTTCTATACTACTAACTATTAAGCGCTGTTGTGTACAGTATATAAAATGTAGTACATACATGTTTACTGATATCTGACTCAAAAAAAAAAAAAA]
[-] EMBL CA760505 [AGAGGACGAGACAAGGGGGTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAATTGCATGCAGAGTGTATATATACTACAGTAAGAAATGTAGATCGACTTCTATACTACTAACTATTAAGCGCTGTTGTGTACAGTATATAAAATGTAGTACATACATGTTTACTGATATCTGACTCAAAAAAAAAAAAAA]
consensusID : consensus_15872#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 214 fasta sequence
[AATTCCCAGGGTGCAGACACACACGCAGTCACAGATCACTTTTTGCTCTGGTGTTGCTGAATCAATGGACAAACTGCCACCCCTGGGAATAATTGCATGCAGAGTGTATATATACTACAAGTAAGAAATGTAGATCGACTTCTATACTACTAACTATTAAGCGCTGTTGTGTACAAGTATATAAAATGTAGTACATACATGTTTACTGAAAAAA]
[+] EMBL BI811713 [AATTCCCAGGGTGCAGACACACACGCAGTCACAGATCACTTTTTGCTCTGGTGTTGCTGAATCAATGGACAAACTGCCACCCCTGGGAATAATTGCATGCAGAGTGTATATATACTACAAGTAAGAAATGTAGATCGACTTCTATACTACTAACTATTAAGCGCTGTTGTGTACAAGTATATAAAATGTAGTACATACATGTTTACTGAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15872#0 TGGACTGAAGGAGTAGAAAGCACATCTCTCTCTCTCGCTTCTGCCACTGCTGGCTGTGCT 60
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 GCTTCCCTAGCTCCTCGGTTGGATCAAAGAGAAGAGAAGAGAAGAGTTAATGCTGATGGC 120
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 CTCCGAGGCGTGGCTGTCGCCGGCTTCCCGCCTCTTCCACCCTCCCCGCTCCTCCACCGC 180
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 CGCCTTCTTCTCCGCTTCCGGGCTCCCCCGCCTGCCTCGCCGCTCCTCCTGTGCACTCGC 240
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 AACCTCCACGCGTGGGCGGCGCCTCCGCCTTGGCGCCACCGATCAGCAGCAGCAGCAAGG 300
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 CAAACAAGATGGTGATGAGGTTGTGGACAGCAACGTGCTCCAGTACTGCAGCATCGACGG 360
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 GAAGGGGAAGAAGGCCGAGAAGAGGTCGCTGGGTGAGATGGAGCAGGAGTTCCTTCAGGC 420
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 TCTTCAGGCCTTCTACTACGACCAGAAGGCCATCATGTCCAACGAGGAGTTCGACAACCT 480
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 CAAGGAGGAGCTCATGTGGGAAGGCAGCAGCGTTGTCATGCTAAGCCCTGACGAACAACG 540
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 CCTGCTCGAAGCCTCCATGGCCTATGCTGCCGGCAACCCCATCATGTCTGACGCTGAATT 600
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 CGACCAACTCAAACTCAGATTGAAGAAAGACGGAAGTGACATTGTCACCGAAGGTCCCAG 660
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 GTGCAGTCTACGCAGCCGAAAGGTGTACAGTGATTTGACCGTTGACTACCTAAAGATGTT 720
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 CCTGCTAAATGTTCCAGCAACTACTCTTGCTCTAGGACTGTTCTTCTTCATCGATGAGTT 780
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 GACTGGCTTTGAGATCAACATATTCCAGCTGCCAGAGCCTTTCGGTTTCATTTTCACATG 840
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 GTTTGCTGCTTTGCCTCTAATATTGTTCATAGCACAGTCGATAACTAATGCCATAGTGAA 900
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 CGACTTCTTAATCCTCAAGGGGCCATGTCCGAATTGTGGCGCTGAAAACCTTTCCTTCTT 960
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 CGGGACTATCCTGTCAGTGTCTAGTGGCGGTGAAACAAACAAAGTGAAATGTGCAGATTG 1020
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 TAGCACGGAGATGGTATATGACTCGAAATCTCGGCTCATCACCCTTCCAGAACCATCGCA 1080
consensus_15872#2 ------------------------------------------------------------
consensus_15872#1 ------------------------------------------------------------
consensus_15872#3 ------------------------------------------------------------
consensus_15872#0 ATGAAATGAATGGTGAATTCTTCAAGGTACGATGCCAGATGGAGAGATGCAAACAAGGAG 1140
consensus_15872#2 ------------------------------------------AGAGGACGAGACAAGGGG 18
consensus_15872#1 ------------------------------------------AGAGGCCGAGACAAGGGG 18
consensus_15872#3 ----------------------AATTCCCAGGGTGCAGACACACACGCAGTCACAGATCA 38
* * ***
consensus_15872#0 GTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAA 1200
consensus_15872#2 GTGATCAGGTAGGAAACAACAAATAAAATGGAATTATTGTAACGGATGGGTGTTCACAAA 78
consensus_15872#1 GTGGTCAGGTAGGAACCACCAAATAAAATGGAATTTTTGTAACGGATGGGTGTTCCCCAC 78
consensus_15872#3 CTTTTTGCTCTGGTGTTGCTGAATCAA-TGGACAAACTGCCACCCCTGGGAAT-----AA 92
* * ** *** ** **** ** ** **** * *
consensus_15872#0 TTGCATGCAGAGTGTATATATACTACA-GTAAGAAATGTAGATCGACTTCTATACTACTA 1259
consensus_15872#2 TTGCATGCAGAGTGTATATATACTACA-GTAAGAAATGTAGATCGACTTCTATACTACTA 137
consensus_15872#1 CCGCCTGCAGAGGGTATATTTTCTCCC-GTAAGAAATGTAGATCGGCTTCTATACTACTA 137
consensus_15872#3 TTGCATGCAGAGTGTATATATACTACAAGTAAGAAATGTAGATCGACTTCTATACTACTA 152
** ******* ****** * ** * ***************** **************
consensus_15872#0 ACTATTAAGCGCTGTTGTGTACA-GTATATAAAATGTAGTACATACATGTTTACTGATAT 1318
consensus_15872#2 ACTATTAAGCGCTGTTGTGTACA-GTATATAAAATGTAGTACATACATGTTTACTGATAT 196
consensus_15872#1 ACTATTAAGCGCTGTTGTGTCCC-GTATATAAAATGTAGTACATCCATGTTTTCTGAAAA 196
consensus_15872#3 ACTATTAAGCGCTGTTGTGTACAAGTATATAAAATGTAGTACATACATGTTTACTGAAAA 212
******************** * ******************** ******* **** *
consensus_15872#0 CTGACTCAACTGAAATACTACACACATATGTGTGTTGGAGATAAAAAAAAAA 1370
consensus_15872#2 CTGACTCAAAAAAAAAAAAAA------------------------------- 217
consensus_15872#1 AAAAAAAAAAAAAAAAAAAAAAAA---------------------------- 220
consensus_15872#3 AA-------------------------------------------------- 214
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||