These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15873#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 715 fasta sequence [CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACTCCACATAATAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC-TCCGGCGACGACGACGTCCATCCTGGCACTGGCC-TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG--T--GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT-GGT-GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTTCTTGCAGTTCCAGGTTCT] [+] EMBL CF196494 [CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACTCCACATAATAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGANNAAAAACGCGGCGGCGATGCCAGC TCCGGCGANNNNNNCGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTNTNNNCTTTn ] [+] EMBL CF196650 [CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACTCCACATAATAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGNCAGCAA ] [+] EMBL AK063209 [ CTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG T GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTTCTTGCAGTTCCAGGTTCT] [+] EMBL CF332944 [ TTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGGGN TG GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGGTGGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCAC ] [+] EMBL CF332496 [ TTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGT AGTGGNTT GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGGTGGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACCCTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTT ] [+] EMBL C91888 [ TGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG T GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCT ] [+] EMBL AU032934 [ CATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCG CANAAATGTCAACAGTGGACCGGCCGACACGCGGCANGGGAAAAACGCGGCGGCATTGCCAGCTTCCGGCGACGACGACGTCCATNCTGGCACTTGCCTTTCTTCTTCGCCATTGCTGTCTCAGTTTTCAGtt ] [-] EMBL CF298953 [ CTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG T GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCCCAAaaaaa ] [+] EMBL CF324845 [ GACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG TTGGGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCAaa ] [+] EMBL AU094717 [ GGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG T GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTAaaaaaaa ] [+] EMBL AU161503 [ caccCCGGCGACGACGACGTCCATCCTGGCACTGGCC TCNTCCNTCGCCATNGCTGTCNCAG TTTCAGCTNCTGAANCTGTGTGAGTGG T GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCAaca ] consensusID : consensus_15873#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [GAGTAGAAATTTTTAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGTTTTAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGCCTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAAAAAAAAAAAAAAAAAAACAC] [+] EMBL CF298954 [GAGTAGAAATTTTTAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGTTTTAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGCCTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAAAAAAAAAAAAAAAAAAACAC] consensusID : consensus_15873#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 641 fasta sequence [CCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGGNGACTTTCTGTGTNTGGGCGGGTGGGGNCTTTGGCTGTTTNTGTGGGCGCTTCGCTGGTGTTGGTGCGTGCNCCTCTGAAGGGGGTTTCNTGGTGGTTGCTTCTTGGTCTCCCCTGTGGTTTTTTTCGTNNNCTNTCTTTCTTGCGCGCGGGGGTCCGTGGTTCTCTTTGTCCTTTGCGCGTCTTTTGTTTTTTGCCTCTCCTTNCGGCGGTGTNTTTGTTTGGCTGCTGTGGNTGCCTCTCTTTGCTCCTCGNCCGCGGNGGGTNGCCTCNCCTCGCTGGCTCCCCTGGCTTTGGCTCCCTGGTGCGCNGCGCCNCCTCTGTTGCNTGCTTGCTGCGCCTGGGNGGNTTGNTGGCCNGCGNCGTGTCCNGCGGGGGTTGCGTTGGTGGGTTGGTGG] [+] EMBL CA757461 [CCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGGNGACTTTCTGTGTNTGGGCGGGTGGGGNCTTTGGCTGTTTNTGTGGGCGCTTCGCTGGTGTTGGTGCGTGCNCCTCTGAAGGGGGTTTCNTGGTGGTTGCTTCTTGGTCTCCCCTGTGGTTTTTTTCGTNNNCTNTCTTTCTTGCGCGCGGGGGTCCGTGGTTCTCTTTGTCCTTTGCGCGTCTTTTGTTTTTTGCCTCTCCTTNCGGCGGTGTNTTTGTTTGGCTGCTGTGGNTGCCTCTCTTTGCTCCTCGNCCGCGGNGGGTNGCCTCNCCTCGCTGGCTCCCCTGGCTTTGGCTCCCTGGTGCGCNGCGCCNCCTCTGTTGCNTGCTTGCTGCGCCTGGGNGGNTTGNTGGCCNGCGNCGTGTCCNGCGGGGGTTGCGTTGGTGGGTTGGTGG] [+] EMBL BU673042 [ agcttggCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAG ] consensusID : consensus_15873#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 620 fasta sequence [TCTTGCTGGTGATTAGTCCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT-GGCCATAGCTCACAAGGGTGGCAGCGCGGGCGCCGCCGCGGCCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGCTGATGATCACTGAATTCGTGTGCTGTGTGTCCAGTTCGTCAGAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTGATTC] [+] EMBL AK062738 [TCTTGCTGGTGATTAGTCCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGCGGGCGCCGCCGCGGCCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGCTGATGATCACTGAATTCGTGTGCTGTGTGTCCAGTTCGTCAGAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTG ] [+] EMBL AU165987 [ TAGTCCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC ] [+] EMBL AU064710 [ CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAATGGGCCATAGCTCACAAAGGg ] [+] EMBL AU064712 [ CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAATGGGCCATAGCTCACAAGGGTGGCAGCGC ] [+] EMBL AU163683 [ CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC ] [+] EMBL AU064686 [ CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGNTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC ] [+] EMBL C93679 [ CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTNCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGTTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTNAGGCCTCATCTCCATGTAGAAGANTTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGNTGG ] [+] EMBL AU094250 [ ATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC ] [+] EMBL AU064088 [ ATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGATGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCG ] [-] EMBL BU673866 [ CGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGGTGATGATCA ] [+] EMBL C98985 [ AAAAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCANCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCANCTTTCAGCTTCTGANCAGATGTGTCGGTGGTGTTCTTGCAAAAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGCTGATGATCACTGAANTCGTGTGCTGTGTGTCCAGTTCGTCANAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTGATTC] consensusID : consensus_15873#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [GACNGGNACGCGTGGGTCANGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTTTGACAGGCGGCACCACAAGGCGGCGGCCACAAATNTNAAACAAGTTGGACCNGCCCGAAAAGGG] [+] EMBL C91609 [GACNGGNACGCGTGGGTCANGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTTTGACAGGCGGCACCACAAGGCGGCGGCCACAAATNTNAAACAAGTTGGACCNGCCCGAAAAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15873#0 CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACT 60 consensus_15873#4 ------------------------------------------------------------ consensus_15873#1 -------------------------------------------------------GAGTA 5 consensus_15873#3 ------------------------------------------------------------ consensus_15873#2 --------------------------------------------------CCGCCGGCGC 10 consensus_15873#0 CCACATAATAGCTTCTTGTTGATCAG-TCCATCTCAAGATGAAGAAAAGCTCTCTTGCTG 119 consensus_15873#4 ------GACNGGNACGCGTGGGTCANGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTG 54 consensus_15873#1 GAAATTTTTAGCTTCTTGTTGATCAG-TCCATCTCAAGATGAAGAAAAGCTCTCTTGCTG 64 consensus_15873#3 ----------TCTTGCTGGTGATTAG-TCCATCTCAAGATGATGAAAAGCTTTCTTGCTC 49 consensus_15873#2 AGGCGGCGGAGGAGTGTCCGAGTCGCGGCCG-CGCAACGGGAAGAACGGCGCGGCGAC-- 67 * ** * *** ** *** ** * consensus_15873#0 TCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTG------AGA 173 consensus_15873#4 TCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTG------AGA 108 consensus_15873#1 TCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTG------AGA 118 consensus_15873#3 TCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACA 109 consensus_15873#2 GCTGCCGGCTCCGGCGACGACGTCCATCCT--GGCAC-TGGCTATCACCTG--------- 115 ** ** **** * * * *** ***** *** * *** consensus_15873#0 GAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATA 233 consensus_15873#4 GAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATA 168 consensus_15873#1 GAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGTTTTAATCGCATA 178 consensus_15873#3 GAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCAT- 168 consensus_15873#2 --TGCCGCTGTTCT-------CTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTT 166 *** * * * ******* ** * ** * * * * consensus_15873#0 TCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 290 consensus_15873#4 TCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 225 consensus_15873#1 TCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 235 consensus_15873#3 --------GGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 217 consensus_15873#2 C--TTGCAAGAAAGGTACTAGTAGAG-TGTGTGTGTGTGTTTTCTTTTGAGATGATAGTA 223 * *** ** * *** * ** ** * **** consensus_15873#0 TGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTC-G 349 consensus_15873#4 TGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTTTG 285 consensus_15873#1 TGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTC-G 294 consensus_15873#3 TGAAGGTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCGCGGGCGCCGCC---- 273 consensus_15873#2 TGATGTGTGTCGGTGGTGTGGNGACTTTCTGTGTNTGGGCGGGTGGGGNCTTTGGCTGTT 283 *** * * * * *** * * * * ** * * * consensus_15873#0 ACAGGCGGCACCACA-GGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCC 408 consensus_15873#4 ACAGGCGGCACCACAAGGCGGCGGCCACAAATNTNAAACAAGTTGGACCNGCCCGAAAAG 345 consensus_15873#1 ACAGGCGGCACCACA-GGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCC 353 consensus_15873#3 GCGGCCGCCGGCGCA-GGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAA 332 consensus_15873#2 TNTGTGGGCGCTTCG--CTGGTGTTGGTGCGTGCNCCTCTGAAGGGGGTTTCNTGGTGGT 341 * * * * ** * * * * consensus_15873#0 GAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGC 468 consensus_15873#4 GG---------------------------------------------------------- 347 consensus_15873#1 GAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGC 413 consensus_15873#3 CGG------CGCGGCGACGCTGCCGGCTCCGGCGACGAC---GTCCATCCTGGCACTGGC 383 consensus_15873#2 TGCTTCTTGGTCTCCCCTGTGGTTTTTTTCGTNNNCTNTC-TTTCTTGCGCGCGGGGGTC 400 consensus_15873#0 CTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGT 528 consensus_15873#4 ------------------------------------------------------------ consensus_15873#1 CTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGT 473 consensus_15873#3 TATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGT-CGGTGGTGT 442 consensus_15873#2 CGTGGTTCTCTTTGTCCTTTGCGCGTCTTTTGTTTTTTGCCTCTCCTTN--CGGCGGTGT 458 consensus_15873#0 TCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAAT 588 consensus_15873#4 ------------------------------------------------------------ consensus_15873#1 TCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAAT 533 consensus_15873#3 TCTTGCAAGAAAGGTACTAGTA-GAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTAT 501 consensus_15873#2 NTTTGTTTGGCTGCTGTGGNTGCCTCTCTTTGCTCCTCGNCCG-CGGNGGGTNGCCTCNC 517 consensus_15873#0 TTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATA 648 consensus_15873#4 ------------------------------------------------------------ consensus_15873#1 TTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATA 593 consensus_15873#3 GATGTGTGTCGGTGGTGTGCTGATGATCACTGAATTCGTGTGCTGTGTGTCCAGTTCGTC 561 consensus_15873#2 CTCGCTGGCTCCCCTGGCTTTGGCTCCCTGGTGCGCNGCGCCNCCTCTGTTGCNTGCTTG 577 consensus_15873#0 TTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTTCTTGCAGTTCC 708 consensus_15873#4 ------------------------------------------------------------ consensus_15873#1 TTCAATATTCTTGATTTATCGTCTGCACAAAAAAAAAAAAAAAAAAACAC---------- 643 consensus_15873#3 AGAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTGATTC- 620 consensus_15873#2 CTGCGCCTGGGNGGNTTGNTGGCCNGCGNCGTGTCCNGCGGGGGTTGCGTTGGTGGGTTG 637 consensus_15873#0 AGGTTCT 715 consensus_15873#4 ------- consensus_15873#1 ------- consensus_15873#3 ------- consensus_15873#2 GTGG--- 641 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||