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Oryza sativa
cluster # 15873 cluster # 15873       Sequences # 26       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15873#0 length = 715 sequences # 11  
consensus_15873#1 length = 643 sequences # 1  
consensus_15873#2 length = 641 sequences # 2  
consensus_15873#3 length = 620 sequences # 11  
consensus_15873#4 length = 347 sequences # 1  

consensusID : consensus_15873#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 715
fasta sequence
                              [CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACTCCACATAATAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC-TCCGGCGACGACGACGTCCATCCTGGCACTGGCC-TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG--T--GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT-GGT-GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTTCTTGCAGTTCCAGGTTCT]

[+] EMBL CF196494             [CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACTCCACATAATAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGANNAAAAACGCGGCGGCGATGCCAGC TCCGGCGANNNNNNCGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTNTNNNCTTTn                                                                                                                                                                                                                              ]
[+] EMBL CF196650             [CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACTCCACATAATAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGNCAGCAA                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK063209             [                                                                       CTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG  T  GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTTCTTGCAGTTCCAGGTTCT]
[+] EMBL CF332944             [                                                                        TTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGGGN  TG GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGGTGGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCAC                                       ]
[+] EMBL CF332496             [                                                                        TTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGT AGTGGNTT  GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGGTGGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACCCTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTT                  ]
[+] EMBL C91888               [                                                                               TGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG  T  GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCT                                                                                 ]
[+] EMBL AU032934             [                                                                                        CATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCG CANAAATGTCAACAGTGGACCGGCCGACACGCGGCANGGGAAAAACGCGGCGGCATTGCCAGCTTCCGGCGACGACGACGTCCATNCTGGCACTTGCCTTTCTTCTTCGCCATTGCTGTCTCAGTTTTCAGtt                                                                                                                                                                                                                          ]
[-] EMBL CF298953             [                                                                                                                                               CTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG  T  GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCCCAAaaaaa                                ]
[+] EMBL CF324845             [                                                                                                                                                                                                           GACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG  TTGGGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCAaa                                                                                  ]
[+] EMBL AU094717             [                                                                                                                                                                                                                                                                                GGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGC TCCGGCGACGACGACGTCCATCCTGGCACTGGCC TTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGG  T  GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTAaaaaaaa                                          ]
[+] EMBL AU161503             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 caccCCGGCGACGACGACGTCCATCCTGGCACTGGCC TCNTCCNTCGCCATNGCTGTCNCAG TTTCAGCTNCTGAANCTGTGTGAGTGG  T  GGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGT GGT GTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCAaca                                     ]


>consensus_15873#0 CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACT CCACATAATAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGT CTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCA CAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGA AGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCC CAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCAC CACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGC GGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGCCTTCTCCTTCGC CATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGTTCTTGCAAGAAA GGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAG TTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTT GATTTATCGTCTGCACAATGATGTCCCAGACATTGTTCTTGCAGTTCCAGGTTCT



consensusID : consensus_15873#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence
                              [GAGTAGAAATTTTTAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGTTTTAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGCCTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAAAAAAAAAAAAAAAAAAACAC]

[+] EMBL CF298954             [GAGTAGAAATTTTTAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGTTTTAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGCGGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGCCTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGTTCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAATTTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATATTCTTGATTTATCGTCTGCACAAAAAAAAAAAAAAAAAAACAC]


>consensus_15873#1 GAGTAGAAATTTTTAGCTTCTTGTTGATCAGTCCATCTCAAGATGAAGAAAAGCTCTCTT GCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGA AGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGTTTTAATCGCATATC ACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAG TTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTCGACAGGC GGCACCACAGGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCCGAGGAAA AACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGCCTTCTCC TTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGTTCTTGCA AGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAATTTGTGTA TCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATATTCAATA TTCTTGATTTATCGTCTGCACAAAAAAAAAAAAAAAAAAACAC



consensusID : consensus_15873#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 641
fasta sequence
                              [CCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGGNGACTTTCTGTGTNTGGGCGGGTGGGGNCTTTGGCTGTTTNTGTGGGCGCTTCGCTGGTGTTGGTGCGTGCNCCTCTGAAGGGGGTTTCNTGGTGGTTGCTTCTTGGTCTCCCCTGTGGTTTTTTTCGTNNNCTNTCTTTCTTGCGCGCGGGGGTCCGTGGTTCTCTTTGTCCTTTGCGCGTCTTTTGTTTTTTGCCTCTCCTTNCGGCGGTGTNTTTGTTTGGCTGCTGTGGNTGCCTCTCTTTGCTCCTCGNCCGCGGNGGGTNGCCTCNCCTCGCTGGCTCCCCTGGCTTTGGCTCCCTGGTGCGCNGCGCCNCCTCTGTTGCNTGCTTGCTGCGCCTGGGNGGNTTGNTGGCCNGCGNCGTGTCCNGCGGGGGTTGCGTTGGTGGGTTGGTGG]

[+] EMBL CA757461             [CCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGGNGACTTTCTGTGTNTGGGCGGGTGGGGNCTTTGGCTGTTTNTGTGGGCGCTTCGCTGGTGTTGGTGCGTGCNCCTCTGAAGGGGGTTTCNTGGTGGTTGCTTCTTGGTCTCCCCTGTGGTTTTTTTCGTNNNCTNTCTTTCTTGCGCGCGGGGGTCCGTGGTTCTCTTTGTCCTTTGCGCGTCTTTTGTTTTTTGCCTCTCCTTNCGGCGGTGTNTTTGTTTGGCTGCTGTGGNTGCCTCTCTTTGCTCCTCGNCCGCGGNGGGTNGCCTCNCCTCGCTGGCTCCCCTGGCTTTGGCTCCCTGGTGCGCNGCGCCNCCTCTGTTGCNTGCTTGCTGCGCCTGGGNGGNTTGNTGGCCNGCGNCGTGTCCNGCGGGGGTTGCGTTGGTGGGTTGGTGG]
[+] EMBL BU673042             [                                agcttggCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]


>consensus_15873#2 CCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCG CGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCG CTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGT ACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGT GTGGNGACTTTCTGTGTNTGGGCGGGTGGGGNCTTTGGCTGTTTNTGTGGGCGCTTCGCT GGTGTTGGTGCGTGCNCCTCTGAAGGGGGTTTCNTGGTGGTTGCTTCTTGGTCTCCCCTG TGGTTTTTTTCGTNNNCTNTCTTTCTTGCGCGCGGGGGTCCGTGGTTCTCTTTGTCCTTT GCGCGTCTTTTGTTTTTTGCCTCTCCTTNCGGCGGTGTNTTTGTTTGGCTGCTGTGGNTG CCTCTCTTTGCTCCTCGNCCGCGGNGGGTNGCCTCNCCTCGCTGGCTCCCCTGGCTTTGG CTCCCTGGTGCGCNGCGCCNCCTCTGTTGCNTGCTTGCTGCGCCTGGGNGGNTTGNTGGC CNGCGNCGTGTCCNGCGGGGGTTGCGTTGGTGGGTTGGTGG



consensusID : consensus_15873#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 620
fasta sequence
                              [TCTTGCTGGTGATTAGTCCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT-GGCCATAGCTCACAAGGGTGGCAGCGCGGGCGCCGCCGCGGCCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGCTGATGATCACTGAATTCGTGTGCTGTGTGTCCAGTTCGTCAGAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTGATTC]

[+] EMBL AK062738             [TCTTGCTGGTGATTAGTCCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGCGGGCGCCGCCGCGGCCGCCGGCGCAGGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGCTGATGATCACTGAATTCGTGTGCTGTGTGTCCAGTTCGTCAGAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTG    ]
[+] EMBL AU165987             [             TAGTCCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU064710             [                 CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAATGGGCCATAGCTCACAAAGGg                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU064712             [                 CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAATGGGCCATAGCTCACAAGGGTGGCAGCGC                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU163683             [                 CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU064686             [                 CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGNTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C93679               [                 CCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTNCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGTTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTNAGGCCTCATCTCCATGTAGAAGANTTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGNTGG                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU094250             [                   ATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCGC                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU064088             [                   ATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGATGTGCTGCTGCTGCTGACAGAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAAT GGCCATAGCTCACAAGGGTGGCAGCG                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL BU673866             [                                                                                                                                                                                                                                                                                                                                    CGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGGTGATGATCA                                                                                          ]
[+] EMBL C98985               [                                                                                                                                                                                                                                                                                                                                        AAAAACGGCGCGGCGACGCTGCCGGCTCCGGCGACGACGTCCANCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCANCTTTCAGCTTCTGANCAGATGTGTCGGTGGTGTTCTTGCAAAAAAGGTACTAGTAGAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGCTGATGATCACTGAANTCGTGTGCTGTGTGTCCAGTTCGTCANAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTGATTC]


>consensus_15873#3 TCTTGCTGGTGATTAGTCCATCTCAAGATGATGAAAAGCTTTCTTGCTCTCTTCCTCCTC CTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACAGAAGCCACAGG ATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCATGGCAAGAAGCTC ATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGGTTCCCAAGAGAATGGCC ATAGCTCACAAGGGTGGCAGCGCGGGCGCCGCCGCGGCCGCCGGCGCAGGCGGCGGAGGA GTGTCCGAGTCGCGGCCGCGCAACGGGAAGAACGGCGCGGCGACGCTGCCGGCTCCGGCG ACGACGTCCATCCTGGCACTGGCTATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTC TGATCAGATGTGTCGGTGGTGTTCTTGCAAGAAAGGTACTAGTAGAGTGTGTGTGTGTGT TTTCTTTTGAGATGATAGTATGATGTGTGTCGGTGGTGTGCTGATGATCACTGAATTCGT GTGCTGTGTGTCCAGTTCGTCAGAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGC ATGCATCTTATTGTTGATTC



consensusID : consensus_15873#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 347
fasta sequence
                              [GACNGGNACGCGTGGGTCANGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTTTGACAGGCGGCACCACAAGGCGGCGGCCACAAATNTNAAACAAGTTGGACCNGCCCGAAAAGGG]

[+] EMBL C91609               [GACNGGNACGCGTGGGTCANGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTTTGACAGGCGGCACCACAAGGCGGCGGCCACAAATNTNAAACAAGTTGGACCNGCCCGAAAAGGG]


>consensus_15873#4 GACNGGNACGCGTGGGTCANGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTGTCTTCC TCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTGAGAGAAGCCACAGGA TTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATATCACTGAAGGCA AGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGGTGAAGTTTCCCAAGA GAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTTTGACAGGCGGCACCACA AGGCGGCGGCCACAAATNTNAAACAAGTTGGACCNGCCCGAAAAGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15873#0      CGGGAAGACTCCCAGGCCTCTCTACAGAAGTTATAAGAGGAAAGAGCCTCCACACACACT 60
consensus_15873#4      ------------------------------------------------------------
consensus_15873#1      -------------------------------------------------------GAGTA 5
consensus_15873#3      ------------------------------------------------------------
consensus_15873#2      --------------------------------------------------CCGCCGGCGC 10
                                                                                   

consensus_15873#0      CCACATAATAGCTTCTTGTTGATCAG-TCCATCTCAAGATGAAGAAAAGCTCTCTTGCTG 119
consensus_15873#4      ------GACNGGNACGCGTGGGTCANGTCCATCTCAAGATGAAGAAAAGCTCTCTTGCTG 54
consensus_15873#1      GAAATTTTTAGCTTCTTGTTGATCAG-TCCATCTCAAGATGAAGAAAAGCTCTCTTGCTG 64
consensus_15873#3      ----------TCTTGCTGGTGATTAG-TCCATCTCAAGATGATGAAAAGCTTTCTTGCTC 49
consensus_15873#2      AGGCGGCGGAGGAGTGTCCGAGTCGCGGCCG-CGCAACGGGAAGAACGGCGCGGCGAC-- 67
                                             *     **  * ***   ** ***  **       *  

consensus_15873#0      TCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTG------AGA 173
consensus_15873#4      TCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTG------AGA 108
consensus_15873#1      TCTTCCTCCTCCTACTCACCCTTGCTTCCCAGGGCACATGGTGTGCTGCTG------AGA 118
consensus_15873#3      TCTTCCTCCTCCTACTCACCTTTGCCTCCCATGGCACATGGTGTGCTGCTGCTGCTGACA 109
consensus_15873#2      GCTGCCGGCTCCGGCGACGACGTCCATCCT--GGCAC-TGGCTATCACCTG--------- 115
                        ** **  ****  *       * * ***   ***** ***    *  ***         

consensus_15873#0      GAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATA 233
consensus_15873#4      GAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGGAAGAATCGCATA 168
consensus_15873#1      GAAGCCACAGGATTAATGGAGCTCATCTGAGACCTCATGTCCAGGTGTTTTAATCGCATA 178
consensus_15873#3      GAAGCCACAGGATTACTACAGCTCATCTGAGGCCTCATCTCCATGTAGAAGAATTGCAT- 168
consensus_15873#2      --TGCCGCTGTTCT-------CTCATCTTTCAGCTTCTGATCAGATGTGTCGGTGGTGTT 166
                          *** * *   *       *******     **  *   **  *       * *  * 

consensus_15873#0      TCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 290
consensus_15873#4      TCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 225
consensus_15873#1      TCACTGAAGGCAAGAAGCTCCTGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 235
consensus_15873#3      --------GGCAAGAAGCTCATGGAGATTCAGGTCCCCAGGAAGCTTGGCCATGAGG--- 217
consensus_15873#2      C--TTGCAAGAAAGGTACTAGTAGAG-TGTGTGTGTGTGTTTTCTTTTGAGATGATAGTA 223
                                * ***   **  * *** *    **           ** *  ****     

consensus_15873#0      TGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTC-G 349
consensus_15873#4      TGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTTTG 285
consensus_15873#1      TGAAGTTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCACGGGCGGCGGCTC-G 294
consensus_15873#3      TGAAGGTTCCCAAGAGAATGGCCATAGCTCACAAGGGTGGCAGCGCGGGCGCCGCC---- 273
consensus_15873#2      TGATGTGTGTCGGTGGTGTGGNGACTTTCTGTGTNTGGGCGGGTGGGGNCTTTGGCTGTT 283
                       *** *  *  *    *  ***  *            * *   *   ** *   * *    

consensus_15873#0      ACAGGCGGCACCACA-GGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCC 408
consensus_15873#4      ACAGGCGGCACCACAAGGCGGCGGCCACAAATNTNAAACAAGTTGGACCNGCCCGAAAAG 345
consensus_15873#1      ACAGGCGGCACCACA-GGCGGCGCCAGCAATGTCAACAGTGGACCGGCCGACACGCGGCC 353
consensus_15873#3      GCGGCCGCCGGCGCA-GGCGGCGGAGGAGTGTCCGAGTCGCGGCCGCGCAACGGGAAGAA 332
consensus_15873#2      TNTGTGGGCGCTTCG--CTGGTGTTGGTGCGTGCNCCTCTGAAGGGGGTTTCNTGGTGGT 341
                          *  * *    *     ** *                      *     *  *     

consensus_15873#0      GAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGC 468
consensus_15873#4      GG---------------------------------------------------------- 347
consensus_15873#1      GAGGAAAAACGCGGCGGCGATGCCAGCTCCGGCGACGACGACGTCCATCCTGGCACTGGC 413
consensus_15873#3      CGG------CGCGGCGACGCTGCCGGCTCCGGCGACGAC---GTCCATCCTGGCACTGGC 383
consensus_15873#2      TGCTTCTTGGTCTCCCCTGTGGTTTTTTTCGTNNNCTNTC-TTTCTTGCGCGCGGGGGTC 400
                                                                                   

consensus_15873#0      CTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGT 528
consensus_15873#4      ------------------------------------------------------------
consensus_15873#1      CTTCTCCTTCGCCATTGCTGTCTCAGCTTTCAGCTTCTGAAGCTGTGTGAGTGGTGGTGT 473
consensus_15873#3      TATCACCTGTGCCGCTGTTCTCTCATCTTTCAGCTTCTGATCAGATGTGT-CGGTGGTGT 442
consensus_15873#2      CGTGGTTCTCTTTGTCCTTTGCGCGTCTTTTGTTTTTTGCCTCTCCTTN--CGGCGGTGT 458
                                                                                   

consensus_15873#0      TCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAAT 588
consensus_15873#4      ------------------------------------------------------------
consensus_15873#1      TCTTGCAAGAAAGGTATTAGTATGTGTGTTAGTGGTGTGGTAATCTCTGAATGACTGAAT 533
consensus_15873#3      TCTTGCAAGAAAGGTACTAGTA-GAGTGTGTGTGTGTGTTTTCTTTTGAGATGATAGTAT 501
consensus_15873#2      NTTTGTTTGGCTGCTGTGGNTGCCTCTCTTTGCTCCTCGNCCG-CGGNGGGTNGCCTCNC 517
                                                                                   

consensus_15873#0      TTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATA 648
consensus_15873#4      ------------------------------------------------------------
consensus_15873#1      TTGTGTATCCAGTTTATCAGTAGTGCACACTGAAATTGTTTCATCTTCCTGTATCTTATA 593
consensus_15873#3      GATGTGTGTCGGTGGTGTGCTGATGATCACTGAATTCGTGTGCTGTGTGTCCAGTTCGTC 561
consensus_15873#2      CTCGCTGGCTCCCCTGGCTTTGGCTCCCTGGTGCGCNGCGCCNCCTCTGTTGCNTGCTTG 577
                                                                                   

consensus_15873#0      TTCAATATTCTTGATTTATCGTCTGCACAATGATGTCCCAGACATTGTTCTTGCAGTTCC 708
consensus_15873#4      ------------------------------------------------------------
consensus_15873#1      TTCAATATTCTTGATTTATCGTCTGCACAAAAAAAAAAAAAAAAAAACAC---------- 643
consensus_15873#3      AGAAGTACACTGAAATTGTTTTCATGGCTAATTATCAGCATGCATCTTATTGTTGATTC- 620
consensus_15873#2      CTGCGCCTGGGNGGNTTGNTGGCCNGCGNCGTGTCCNGCGGGGGTTGCGTTGGTGGGTTG 637
                                                                                   

consensus_15873#0      AGGTTCT 715
consensus_15873#4      -------
consensus_15873#1      -------
consensus_15873#3      -------
consensus_15873#2      GTGG--- 641
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)