These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15896#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 1201 fasta sequence [TTTGCTTCTCCCGTTCCGTTTCTCCTCCTCTCCTCTTCTTCTCCCCTCTCCTCTCTCCACTTCTACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT-GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT-GC-TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT-AGAAATT-GGATCCGCAACATAGAACAACATGCATCTGATAATGTCAACAAGATTTTGGTGGG-CAACAAGGTTGATATGGAT-ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT-CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT-GCAAGGGACATAAAGCAAAGATTGACCGAAACT-GTTGCTGCAGCAGCTGAGCCCCCA-ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC-CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGATTTGTCCTATTTCAAAAAAAAA] [+] EMBL CF279031 [TTTGCTTCTCCCGTTCCGTTTCTCCTCCTCTCCTCTTCTTCTCCCCTCTCCTCTCTCCACTTCTACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGTTGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAG ] [+] EMBL AK111552 [ CGTTCCGTCTCTTCTCCTCTCCTCTTCTTCTCCCCTCTCCTCTCTCCACTTCTACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GC TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT AGAAATT GGATCCGCAACATAGAACAACATGCATCTGATAATGTCAACAAGATTTTGGTGGG CAACAAGGTTGATATGGAT ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGATTTGTCCT ] [+] EMBL AU070029 [ ACTTCTACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAG GGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GC TTGTTTATGATG ] [+] EMBL CF333891 [ TACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCAAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCGNTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GC TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT AGAAATT GGATCCGCAACATAGAACAACATGCATCTGATAA ] [+] EMBL AK104473 [ TACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GC TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT AGAAATT GGATCCGCAACATAGAACAACATGCATCTGATAATGTCAACAAGATTTTGGTGGG CAACAAGGTTGATATGGAT ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTACCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATC ] [+] EMBL AK104346 [ TACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GC TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT AGAAATT GGATCCGCAACATAGAACAACATGCATCTGATAATGTCAACAAGATTTTGGTGGG CAACAAGGTTGATATGGAT ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTACCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATC ] [+] EMBL AU162773 [ CACACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACA CGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCTGGC TTGTTTATGATGTTACAGACGAGTCATCCTTCAACAACATT AGAAATTGGGATCCGCAACATAGAACAACATGCATCTGATAATGTCAACAAGATTTTGGTGGG CAACAAGGTTGATATGGAT ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCNGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGNCATAAAGCGAAG ] [+] EMBL OSC111511 [ ACGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACA NGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGNATTGATTTCAAGGTTCGGACAGTTGAGCTTGATGGGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGA ] [+] EMBL AU069375 [ CGCAGCCGAGATCGAGAGCGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGA ] [+] EMBL AU070228 [ CGAGCTACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATGGCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACA CGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT GGAAAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACAACTGCCTACTATAGAGGTGCTATGGGCATTCT GCTTTGTTTATGATGTTACAGACGNGTCATCCTTCAACAACATTAAGAAATT GGATCCGC ACATAAGACAACATGCATNTGATAATGTC ACAA ATTTTGGGGGG C ] [+] EMBL CF326159 [ TCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATCGGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACTACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGAT ] [+] EMBL AU057712 [ TT GNATCCGCAAC TNGGACCACATGCATCTGATAATGTC ACAAGATTTTGGTGGGCCAACAAGGTTNATATGGATNCCAAACCGGGTGGTGTCCACAGCTCAAGGACAAAAGCTCCGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAANACAAATCAGAACGTGGAGCAGGTATTCTTTACCATTGGCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAG TGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGATTTGTCCTAAAAAAAAAAAAAA] [-] EMBL CF333890 [ GTGGG CAACAAGGTTGATATGGAT ACAAAGCGGGTGGTGTCCACAGCTCAAGGACAAAAGCT CGCAGATGAGTATGGAATGAAATTTTNTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTTTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAaaaa ] [-] EMBL CF279030 [ AGCT CGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACTGGTTGCTGCAGCAGCTGAGCCCCCACACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGGTGTATATTTCGCCCAGTTGATATTTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTTTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAaaaaa ] [+] EMBL CA766708 [ AAATTTTTTGAGACGAGTGCAAAAACAAATCAGAACGTGGAGCAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTAC ] [+] EMBL AU166150 [ CAGGTATTCTTTACCATT GCAAGGGACATAAAGCAAAGATTGACCGAAACT GTTGCTGCAGCAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAaa ] [+] EMBL BI799653 [ TTACCATC CCAAGGAACATAAACCAAAGATTGACCGAAACT GTTGCT CA CAGCTGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCA GCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACCAACCTTCTAAGAGACA CAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGATTTGTCCTATTTCAAAA ] [+] EMBL AU181873 [ TGAGCCCCCA ACTATTCAAATCAGTAGGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTAaaaaaaaa ] [-] EMBL AU165004 [ GGCAAGAACCAGATCAGGCAGCTGCCTCGTCAAGATGGTCAGCCTGCTGTAACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGATTTGTCCTATTTCCCAAAAA ] [+] EMBL CF311977 [ ACACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTAaaa ] [-] EMBL CF311978 [ CACCTGATCAACGCTGCGGCGCACTGCACGGCTTGTCCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACTCNCCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGGTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTAaaaa ] [+] EMBL BE607469 [ TCGCAGCTTGCCTATGACAGCAAATTTACCACTC CCATCTTCCGTGTATTCAATGCCAAGATGTATATTTCGCCCAGTTGATATCTAGGTCAAAAGATCTTTTACCTGACCATTCTGGTGTTGTGATTCCTCAATGAGTTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAGAT ] consensusID : consensus_15896#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [CCCACGGTTANTTTCCATTGTGACCCCACTGTTGGCCACAGGGGGGAACAACTGAGAGATGCCACAAAGGAATTTGANCCCCGGAATACCTTGTTGTCTGCCTAGNCAAGCCTTGGAGNCTCCCCCCCTACGTAGTTCCAAACTCACAGTAGCGCATAGATGACCCAGATCAAGGCAAGACGTGCACNTCTGTCAAGATGGTCAGCCTGCTGTAACACCTGGATCAACGCTGCAGGCGCACTGGCACAGGCTTGTGCACTGGTTCNCAAGCTTGCCTAATGGACAAGCCAAATTNTACCACTGCCCATGCTTCCAGTGTGATTGCAAATGGCCACAGATGTATATTTCGCCCCGTTGATATCTAGGTCCAAAGATCTNTGTACCTGACCACTTCTGGTGTTGTGATTCCTCACATGAGGTGTAAGGGTGGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCCAAACTCTTCNTGTTTTAGCTCTGGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACACAACCTTCTAAGAGACACCGTATCTGATNCCTCTGAAAAAAAAAA] [+] EMBL BM420619 [CCCACGGTTANTTTCCATTGTGACCCCACTGTTGGCCACAGGGGGGAACAACTGAGAGATGCCACAAAGGAATTTGANCCCCGGAATACCTTGTTGTCTGCCTAGNCAAGCCTTGGAGNCTCCCCCCCTACGTAGTTCCAAACTCACAGTAGCGCATAGATGACCCAGATCAAGGCAAGACGTGCACNTCTGTCAAGATGGTCAGCCTGCTGTAACACCTGGATCAACGCTGCAGGCGCACTGGCACAGGCTTGTGCACTGGTTCNCAAGCTTGCCTAATGGACAAGCCAAATTNTACCACTGCCCATGCTTCCAGTGTGATTGCAAATGGCCACAGATGTATATTTCGCCCCGTTGATATCTAGGTCCAAAGATCTNTGTACCTGACCACTTCTGGTGTTGTGATTCCTCACATGAGGTGTAAGGGTGGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCCAAACTCTTCNTGTTTTAGCTCTGGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACACAACCTTCTAAGAGACACCGTATCTGATNCCTCTGAAAAAAAAAA] consensusID : consensus_15896#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [TTCTGGTGTTGTGATTCCTCAATGAGTTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAAAAAAAAAAAAAAAAAAAAAACTCAGACTA] [-] EMBL CA758599 [TTCTGGTGTTGTGATTCCTCAATGAGTTGTAAGGGTGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAAAACTCTTCTTTTTTAGCTCTGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCATGTAAACAAACCTTCTAAGAGACAGCAGTATCTGATTGTCTGAATTCATGATTGTGCATTACTGAAAAAAAAAAAAAAAAAAAAAAACTCAGACTA] consensusID : consensus_15896#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 95 fasta sequence [AGATACTGCTGTCTCTTAGAAGGTTGTTTACATGACAGGAGCAAATCCATCAGCTTATCTGACGAACACAGAGCTAAAAAAAAAAAAACAGAGCG] [+] EMBL CB966748 [AGATACTGCTGTCTCTTAGAAGGTTGTTTACATGACAGGAGCAAATCCATCAGCTTATCTGACGAACACAGAGCTAAAAAAAAAAAAACAGAGCG] [+] EMBL BU672934 [AGATACTGCTGTCTCTTAGAAGGTTGTTTACATGACAGGAGCAAATCCATCAGCTTATCTGACGAACACAGAGCTAAAAAAAAAAAAACAGAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15896#0 TTTGCTTCTCCCGTTCCGTTTCTCCTCCTCTCCTCTTCTTCTCCCCTCTCCTCTCTCCAC 60 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 ------------------------------------------------------------ consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 TTCTACTCTCACCTCTCGCTACCAAACACGCGCACACGCAGCCGAGATCGAGAGCGAGCT 120 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 ------------------------------------------------------------ consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 ACTTGCCCTAGCAGCAGCAGCAGCGAGGAGCGCGAGGGGGCGGCGGCGGCGGCGTGCATG 180 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 ------------------------------------------------------------ consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 GCGGGGGCTCCGTCGAGGTCGCGCGGCGACTTCGACCACCTCATCAAGCTCCTCCTCATC 240 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 ------------------------------------------------------------ consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 GGCGACAGCGGAGTAGGAAAGAGTTGCTTGCTTCTGAGGTTCTCAGATGACACTTTCACT 300 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 ------------------------------------------------------------ consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 ACAAGTTTTATCACCACCATTGGCATTGATTTCAAGGTTCGGACAGTTGAGCTTGATGGA 360 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 ------------------------------------------------------------ consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 AAGCGTGTAAAATTGCAGATTTGGGATACTGCTGGTCAAGAACGTTTCCGGACAATTACA 420 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 ------------------------------------------------------------ consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 ACTGCCTACTATAGAGGTGCTATGGGCATTCTGCTTGTTTATGATGTTACAGACGAGTCA 480 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 ------------------------------------------------------------ consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 TCCTTCAACAACATTAGAAATTGGATCCGCAACATAGAACAACATGCATCTGATAATGTC 540 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 ------------------------------------------------------------ consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 AACAAGATTTTGGTGGGCAACAAGGTTGATATGGATACAAAGCGGGTGGTGTCCACAGCT 600 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 ------------------------------------------------------------ consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 CAAGGACAAAAGCTCGCAGATGAGTATGGAATGAAATTTTTTGAGACGAGTGCAAAAACA 660 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 --CCCACGGTTANTTTCCATTGTGACCCCACTGTTGGCCACAGGGGGGAACA-ACTGAGA 57 consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 AATCAGAACGTGGAGCAGGTATTCTTTACCATTGCAAGGGACATAAAGCAAAGATTGACC 720 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 GATGCCACAAAGGAATTTGANCCCCGGAATACCTTGTTGTCTGCCTAGNCAAGCCTTGGA 117 consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 GAAACTGTTGCTGCAGCAGCTGAGCCCCCAACTATTCAAATCAGTAGGCAAGAACCAGAT 780 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 GNCTCCCCCCCTAC-GTAGTTCCAAACTCACAGTAGCGCATAGATGACCCAGATCAAGGC 176 consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 CAGGCAGCTGCCTC-GTCAAGATGGTCAGCCTGCTGTAACACCTG-ATCAACGCTGC-GG 837 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 AAGACGTGCACNTCTGTCAAGATGGTCAGCCTGCTGTAACACCTGGATCAACGCTGCAGG 236 consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 CGCACTG-CAC-GGCTTGT---CCTGTTCGCAGCTTGCCTATGACAGCAAATTTACCACT 892 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 CGCACTGGCACAGGCTTGTGCACTGGTTCNCAAGCTTGCCTAATGGACAAGCCAAATTNT 296 consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 CCCATCTTCCGTGTATTCAATGCCA--------------AGATGTATATTTCGCCCAGTT 938 consensus_15896#2 ------------------------------------------------------------ consensus_15896#1 ACCACTGCCCATGCTTCCAGTGTGATTGCAAATGGCCACAGATGTATATTTCGCCCCGTT 356 consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 GATATCTAGGTCAAAAGATCTTT-TACCTGACCA-TTCTGGTGTTGTGATTCCTCA-ATG 995 consensus_15896#2 -----------------------------------TTCTGGTGTTGTGATTCCTCA-ATG 24 consensus_15896#1 GATATCTAGGTCCAAAGATCTNTGTACCTGACCACTTCTGGTGTTGTGATTCCTCACATG 416 consensus_15896#3 ------------------------------------------------------------ consensus_15896#0 AGGTGTAAGGGTG-TTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAA 1054 consensus_15896#2 AGTTGTAAGGGTG-TTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCAA 83 consensus_15896#1 AGGTGTAAGGGTGGTTTGCCTGTGTTCTAGCTCTGTTGTTAGTTCTGAATTATGCTTCCA 476 consensus_15896#3 ---------------------------------------------------------AGA 3 * consensus_15896#0 AACTCTTCTT-TTTTAGCTCTG-TGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCAT 1112 consensus_15896#2 AACTCTTCTT-TTTTAGCTCTG-TGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCAT 141 consensus_15896#1 AACTCTTCNTGTTTTAGCTCTGGTGTTCGTCAGATAAGCTGATGGATTTGCTCCTGTCAT 536 consensus_15896#3 TACTGCTGTCTCTTAGAAGGTTGTTTACATGACAGGAGCAAATCCATCAGCTTATCTGAC 63 *** * ** * * * * * * * *** ** ** *** * * * consensus_15896#0 GTAAACA-AACCTTCTAAGAGACAGCAGTATCTGATTG-TCTGAATTCATGATTGTGCAT 1170 consensus_15896#2 GTAAACA-AACCTTCTAAGAGACAGCAGTATCTGATTG-TCTGAATTCATGATTGTGCAT 199 consensus_15896#1 GTAAACACAACCTTCTAAGAGACA-CCGTATCTGATNCCTCTGAAAAAAAAAA------- 588 consensus_15896#3 GAACACAGAGCTAAAAAAAAAAAAACAGAGCG---------------------------- 95 * * *** * * ** * * * * * consensus_15896#0 TACTGAAGATTTGTCCTATTTCAAAAAAAAA--------- 1201 consensus_15896#2 TACTGAAAA---AAAAAAAAAAAAAAAAAAACTCAGACTA 236 consensus_15896#1 ---------------------------------------- consensus_15896#3 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||