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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1592#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 882 fasta sequence
[CCTGCTTCTTTCCCCCACTCCATTAATCCACCACCATTAATATTTCTTGCGCTAGCTGCTTGCGATCTGCTAGCACTCGCACTCGCAGCTGCTGCAACAAAAGAAGAAGACGGGGAGGGAGGGAGGATGCTGGAGATCTGGAGCAGCTTCGGCCTCTGGATGCTGCTGCTGATGCTGGAAGCTGTTTCCCCTGCATAGATCCACGGGAACCCCGCGAACGACCTGGTGGCGCTGGTGAACGCCAACCGGACGGCGACCAAGCTGCCTCATCTGCGCACCAGCGCTGGCCTTGGCTGCATGGCGCTGCAGTACATCTCCGACTGCATTGGCATTGGCATTGGGTGCGCCGGTGACAACACGGTGGCGTGCCAGCCCCCCGAGGCCCACATCACCGATGTGTACGCCGACAACTGCGGCGTCGAGCTCCCCACGGTGGACGTCATCGCGGGCCGCCTCATAGCCGTCCACCAGGAGAGTTGCCCATCGGAGGCCGCGTGAACGGCCGTGATCTCTGGCTCCGGCAGGAGCACTACAGCTATAAAGGTCATCCGCGGAAAGAAGCACACACAGATAGCTGCCGGGTTAGACCGCGCGCACCTCCGCAGGCCGTTATTCAAGAGCCTCCTATTCACCAGCGGTAGGGCCATGTCCACTTTCCTGGTCGAGGCGGGCGTCAAGGGCGTCCACCAGTCTCTTGAGGGGTTCAGAGAGCGTGAGACCATTAGTCTCTCTGTCTCCGGCAGCAGTGCCAAGGCCGATGGTGTGCGTCTTCTCCTCTTCATCGACATCCTCCTAACAGTGGATCAAGTTTATTATTAGTAATTAGCGGTGATCACAGTGCCCCAGGTCTAGTCGTTTTCTGAGCCCAGTAAGATGCATATT]
[+] EMBL AK073658 [CCTGCTTCTTTCCCCCACTCCATTAATCCACCACCATTAATATTTCTTGCGCTAGCTGCTTGCGATCTGCTAGCACTCGCACTCGCAGCTGCTGCAACAAAAGAAGAAGACGGGGAGGGAGGGAGGATGCTGGAGATCTGGAGCAGCTTCGGCCTCTGGATGCTGCTGCTGATGCTGGAAGCTGTTTCCCCTGCATAGATCCACGGGAACCCCGCGAACGACCTGGTGGCGCTGGTGAACGCCAACCGGACGGCGACCAAGCTGCCTCATCTGCGCACCAGCGCTGGCCTTGGCTGCATGGCGCTGCAGTACATCTCCGACTGCATTGGCATTGGCATTGGGTGCGCCGGTGACAACACGGTGGCGTGCCAGCCCCCCGAGGCCCACATCACCGATGTGTACGCCGACAACTGCGGCGTCGAGCTCCCCACGGTGGACGTCATCGCGGGCCGCCTCATAGCCGTCCACCAGGAGAGTTGCCCATCGGAGGCCGCGTGAACGGCCGTGATCTCTGGCTCCGGCAGGAGCACTACAGCTATAAAGGTCATCCGCGGAAAGAAGCACACACAGATAGCTGCCGGGTTAGACCGCGCGCACCTCCGCAGGCCGTTATTCAAGAGCCTCCTATTCACCAGCGGTAGGGCCATGTCCACTTTCCTGGTCGAGGCGGGCGTCAAGGGCGTCCACCAGTCTCTTGAGGGGTTCAGAGAGCGTGAGACCATTAGTCTCTCTGTCTCCGGCAGCAGTGCCAAGGCCGATGGTGTGCGTCTTCTCCTCTTCATCGACATCCTCCTAACAGTGGATCAAGTTTATTATTAGTAATTAGCGGTGATCACAGTGCCCCAGGTCTAGTCGTTTTCTGAGCCCAGTAAGATGCATATT]
consensusID : consensus_1592#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[CCACCACCATTAATATTTCTTGCGCTAGCTGCTTGCGATCTGCGAGCACTCGCACTCGCAGCTGCTGCAACAAAAGAAGAAGACGGGGAGGGAGGGAGGATGCGGGAGATCTGGAGCAGCTTCGGCCTCTGGATGCTGCTGCTGATGCTGGAAGCTGTTTCCCCTGCAAAGATCCACGGGAACCCCGCGAACGACCTGGTGGCGCTGGTGAACGCCAACCGGACGGCGACCAAGCTGCCTCATCTGCGCACCAGCGCTGGCCTTGGCTGCATGGCGCTGCAGTACATCTCCGACTGCATTGGCATTGGCATTGGGTGCGCCGGTGACAACACGGTGGCGTGCCAGCCCCCCGAGGCCCACATCACCGAGGTGTACGCCGCCAACTGCGGCGTCGAGCTCCCCACGGTGGACGTCATCACGGGCCGCCTCCTCGGCTGCCACCGCCAGCGCTCCGACGCGGAGGCCGCGCTGGAGGCCGTGCTCTCCGGCTCCGGCAACAGCACCGCCGCTAGAGCGGTCATCCGCGGCAAGGAGCACACCCAGGTGGGCGCCGGGTTCGACCGCGCGCACCGCCGCGGGCCCTTCTTCTGGTGCCTCCTCTTCAGCAGCGGCAGCGCCAACTCCACCTTCCTGCTCGAGGCCGCCGGCAAGGGCGTCCACCAGTCTCACGGCTGCTTCAGCGTCCCTGACAACACTAGTCTCT]
[+] EMBL AK119712 [CCACCACCATTAATATTTCTTGCGCTAGCTGCTTGCGATCTGCGAGCACTCGCACTCGCAGCTGCTGCAACAAAAGAAGAAGACGGGGAGGGAGGGAGGATGCGGGAGATCTGGAGCAGCTTCGGCCTCTGGATGCTGCTGCTGATGCTGGAAGCTGTTTCCCCTGCAAAGATCCACGGGAACCCCGCGAACGACCTGGTGGCGCTGGTGAACGCCAACCGGACGGCGACCAAGCTGCCTCATCTGCGCACCAGCGCTGGCCTTGGCTGCATGGCGCTGCAGTACATCTCCGACTGCATTGGCATTGGCATTGGGTGCGCCGGTGACAACACGGTGGCGTGCCAGCCCCCCGAGGCCCACATCACCGAGGTGTACGCCGCCAACTGCGGCGTCGAGCTCCCCACGGTGGACGTCATCACGGGCCGCCTCCTCGGCTGCCACCGCCAGCGCTCCGACGCGGAGGCCGCGCTGGAGGCCGTGCTCTCCGGCTCCGGCAACAGCACCGCCGCTAGAGCGGTCATCCGCGGCAAGGAGCACACCCAGGTGGGCGCCGGGTTCGACCGCGCGCACCGCCGCGGGCCCTTCTTCTGGTGCCTCCTCTTCAGCAGCGGCAGCGCCAACTCCACCTTCCTGCTCGAGGCCGCCGGCAAGGGCGTCCACCAGTCTCACGGCTGCTTCAGCGTCCCTGACAACACTAGTCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1592#0 CCTGCTTCTTTCCCCCACTCCATTAATCCACCACCATTAATATTTCTTGCGCTAGCTGCT 60
consensus_1592#1 ---------------------------CCACCACCATTAATATTTCTTGCGCTAGCTGCT 33
*********************************
consensus_1592#0 TGCGATCTGCTAGCACTCGCACTCGCAGCTGCTGCAACAAAAGAAGAAGACGGGGAGGGA 120
consensus_1592#1 TGCGATCTGCGAGCACTCGCACTCGCAGCTGCTGCAACAAAAGAAGAAGACGGGGAGGGA 93
********** *************************************************
consensus_1592#0 GGGAGGATGCTGGAGATCTGGAGCAGCTTCGGCCTCTGGATGCTGCTGCTGATGCTGGAA 180
consensus_1592#1 GGGAGGATGCGGGAGATCTGGAGCAGCTTCGGCCTCTGGATGCTGCTGCTGATGCTGGAA 153
********** *************************************************
consensus_1592#0 GCTGTTTCCCCTGCATAGATCCACGGGAACCCCGCGAACGACCTGGTGGCGCTGGTGAAC 240
consensus_1592#1 GCTGTTTCCCCTGCAAAGATCCACGGGAACCCCGCGAACGACCTGGTGGCGCTGGTGAAC 213
*************** ********************************************
consensus_1592#0 GCCAACCGGACGGCGACCAAGCTGCCTCATCTGCGCACCAGCGCTGGCCTTGGCTGCATG 300
consensus_1592#1 GCCAACCGGACGGCGACCAAGCTGCCTCATCTGCGCACCAGCGCTGGCCTTGGCTGCATG 273
************************************************************
consensus_1592#0 GCGCTGCAGTACATCTCCGACTGCATTGGCATTGGCATTGGGTGCGCCGGTGACAACACG 360
consensus_1592#1 GCGCTGCAGTACATCTCCGACTGCATTGGCATTGGCATTGGGTGCGCCGGTGACAACACG 333
************************************************************
consensus_1592#0 GTGGCGTGCCAGCCCCCCGAGGCCCACATCACCGATGTGTACGCCGACAACTGCGGCGTC 420
consensus_1592#1 GTGGCGTGCCAGCCCCCCGAGGCCCACATCACCGAGGTGTACGCCGCCAACTGCGGCGTC 393
*********************************** ********** *************
consensus_1592#0 GAGCTCCCCACGGTGGACGTCATCGCGGGCCGCCTCATAGCCGTCCACCAGGAGAGTTGC 480
consensus_1592#1 GAGCTCCCCACGGTGGACGTCATCACGGGCCGCCTCCTCGGCTGCCACCGCCAGCGCTCC 453
************************ *********** * * * ***** ** * * *
consensus_1592#0 CCATCGGAGGCCGCGTGAACGGCCGTGATCTCTGGCTCCGGCAGGAGCACTACAGCTATA 540
consensus_1592#1 GACGCGGAGGCCGCGCTGGAGGCCGTGCTCTCCGGCTCCGGCAACAGCACCGCCGCTAGA 513
*********** ******* **** ********** ***** * **** *
consensus_1592#0 AAGGTCATCCGCGGAAAGAAGCACACACAGATAGCTGCCGGGTTAGACCGCGCGCACCTC 600
consensus_1592#1 GCGGTCATCCGCGGCAAGGAGCACACCCAGGTGGGCGCCGGGTTCGACCGCGCGCACCGC 573
************ *** ******* *** * * ******** ************* *
consensus_1592#0 CGCAGGCCGTTATTCAAGAGCCTCCTATTCACCAGCGGTAGGGCCATGTCCACTTTCCTG 660
consensus_1592#1 CGCGGGCCCTTCTTCTGGTGCCTCCTCTTCAGCAGCGGCAGCGCCAACTCCACCTTCCTG 633
*** **** ** *** * ******* **** ****** ** **** ***** ******
consensus_1592#0 GTCGAGGCGGGCGTCAAGGGCGTCCACCAGTCTCTTGAGGGGTTCAGAGAGCGTGAGACC 720
consensus_1592#1 CTCGAGGCCGCCGGCAAGGGCGTCCACCAGTCTCACGGCTGCTTCAGCGTCCCTGACAAC 693
******* * ** ******************** * * ***** * * *** * *
consensus_1592#0 ATTAGTCTCTCTGTCTCCGGCAGCAGTGCCAAGGCCGATGGTGTGCGTCTTCTCCTCTTC 780
consensus_1592#1 ACTAGTCTCT-------------------------------------------------- 703
* ********
consensus_1592#0 ATCGACATCCTCCTAACAGTGGATCAAGTTTATTATTAGTAATTAGCGGTGATCACAGTG 840
consensus_1592#1 ------------------------------------------------------------
consensus_1592#0 CCCCAGGTCTAGTCGTTTTCTGAGCCCAGTAAGATGCATATT 882
consensus_1592#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||