|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1613 fasta sequence
[TTTCTCAAGCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG-AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT-GGGGCATCTGG-TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGAT-GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC-TGGAAGTGTA-TGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGG-AGGTTGTCAAGATGAAGATTGA-GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT-GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT-CCAGCTTCAGTGGGTCGACATC-CCAGG-TTCT-AAGGGTGTATGAA--CT-C-TGTA-CTC-TG-CCTATTGCTTA-CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA-GTGGACAATCA-AATAAGCAACAGC-TTATATTGAT-GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT-GGCTGTAAAATCATTCTTATGTT-GACACAGCAAGTGTCTCGAAGATCCCCCACTA-GGTGTTT-GGGCAGAGCAAAGTTGTAC-AATATGTCTGCAAAGTATAGTTTGGTGTTA-CCCTGTCTGTAGAAAAATAATCAGT-GG-CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAATTTTGCCAAAAAAAATGTCATGTTATGTGGAGAACATGTTAGTGCTATTGGTCTCAGCATTGGAATAACTGCAGTCAAGATACACTACAGGACGACCATTTTACTAGTGGTAAATTTAGAGTTTTGAACTAGGAACATCCGAACAGACGAGTATAAGACAGTATGACACCTAACTACTGCAGACACCCTTCACAATATCAAACCCGGGTCAACACATGAGACGGCAGGACAATAAAATCAGTGGTAATACTTAGAAAGTTACCTTCTGTTTCATACGTATCAAATCATACAAATTTTAAGACTGGCCAAATTGTATAAAAAGTTAGTAAATATCTATAACAAACGGTGGCGCTAATTAGCGCGTTGGGAGCAAAAA]
[+] EMBL C28303 [TTTCTCAAGCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCAAGANCANG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTTNGGGGCATCTGGTTTGGGCTNGTGAAGGTNCGGGTTGTGAGGGGCGTCAACCTTGCCGTCCGGGACCTCCGTTCCAGCGACC ]
[+] EMBL CK085058 [ TCAAGCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACC ]
[+] EMBL AK073631 [ AGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGAT GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCG ]
[+] EMBL AK104165 [ CAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGAT GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCT ]
[+] EMBL CF320177 [ CCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGAT GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGGNAGGTTGTCAAGATGAAGATTGAGGGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCTNGAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACT AGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGG TTCTAAAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AAT ]
[+] EMBL CA755521 [ ACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGAT GAACTCAGCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGGNNTCT AGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAG ]
[+] EMBL AU063869 [ AGATTCTTTCTGGAGATCCATCATCCAGCGAGAG GNGAGCNNGNAGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGGT GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATGG ]
[+] EMBL AU063887 [ AGATTCTTTCTGGAGATCCATCATCCAGCGAGAG GAGAGCGNG AGGGAGAGGAAGAGGGAAAGCCGCCACCGCCATGTT GGGGCATCTGG TTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGG ACGGT GAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGACTTGGAAGTGTATTGACAAAGACACATTCATCG ]
[+] EMBL AU032213 [ TGGAACGNTNGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGAC TGGAAGTGTA TGACAAAGACACATTCATCGATGATGCAATNGGCAATGCGGAG TGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT CTTGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGAAAGTNCCACTCTAAG TTATCA GTGG CCATC AATAAGC ACAG TTATATTGAT GGGA TCTTTa ]
[+] EMBL AU092866 [ tcCCTGTTAGAC TGGAAGTGTA TNACAAAGACACATTCATCGATGATNCAATGGGCAATGCGGAGCTGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTNCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCTCCCAGCTTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAAaaa ]
[+] EMBL AU031549 [ ATGATGCAATGGGCAATGCGGA CTGGACATCCGCCCATTGGTGG AGGTTGTCAAGATGAAGATTGA GGGTGTTGCTGACAACACGGTTGTGAAGAAAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCT GAGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAAGCAACAGC TTATATTGATGGAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAATGGGCTGTAAAATCATTCTTATGTTGGACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTTGGGGCAGAGCAAAGTTGTACAAATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGTGGG CAGGGGTTGTAACTATTGANAC ]
[-] EMBL CF320178 [ AGGGGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATCNCCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAAGCAACAGCNTTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTTTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAACTTTGCCAAAAAAA ]
[+] EMBL AA752017 [ acgagGAAGCAAGAC TGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGCT CCAGCTTCAGTGGGTCGACATC CCANG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA AATAANCAACAGC TTATATTGAT GANATTCTTTTACTGTCCTTGANGANGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCNAAAAT CCCCACTA AGTGTTT GGGCAGAACAAAGTTGTAC AATATGTCTGCAAAGTATANTTTGGTGTTA CCCTGTCTGTAAAAAAATAATCAGT GG CANGGGTTG ]
[+] EMBL AU184723 [ TTCAGTGGGTCGACATC CCAGG TTCT AAGGGTGTATGAA CT C TGTA CTC TG CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTNTAAGTTTATCA GTGGACAATCA AATAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAAaa ]
[+] EMBL AU101583 [ AAGGGTGTATGAA CT C TGTA CTC TN CCTATTGCTTA CAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCA GTGGACAATCA ANTAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATNCCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAATTTTGCCAAAAAA ]
[+] EMBL BQ906164 [ tgGTATGAAACCTCC TGTATCTCGTGCCCTATTGCTTACCAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTACCACGTGGACAATCAGAATAAGCAACAGC TTATATTGAT GAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCGCTACGGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTACCCCTGTCTGTAGAAAAATAATCAGT GGCCAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCC AAGACC ATGCTATCTGCGATTAATCTTCCTAaaaaaaaaa ]
[+] EMBL AU164537 [ TTACTGTCCTTGAGGAGGCAGATACCTCCCAGTGCCTCCTCAAT GGCTGTAAAATCATTCTTATGTT GACACAGCAAGTGTCTCGAAGATCCCCCACTA GGTGTTT GGGCAGAGCAAAGTTGTAC AATATGTCTGCAAAGTATAGTTTGGTGTTA CCCTGTCTGTAGAAAAATAATCAGT GG CAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAaaaaa ]
[+] EMBL AU182292 [ TATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAATTTTGCCAGCAATCATGTCATGTTATGTGGAGAACATGTTAGTGCTATTGGTCTCAGCATTGGAATAACTGCAGTCAAGATACACTACAGGACGACCATTTTACTAGTGGTAAATTTAGAGTTTTGAACTAGGAACATCCGAACAGACGAGTATAAGACAGTATGACACCTAACTACTGCAGACACCCTTCACAATATCAAACCCGGGTCAACACATGAGACGGCAGGACAATAAAATCAGTGGTAATACTTAGAAAGTTACCTTCTGTTTCATACGTATCAAATCATACAAATTTTAAGACTGGCCAAATTGTATAAAAAGTTAGTAAATATCTATAACAAACGGTGGCGCTAATTAGCGCGTTGGGAGCAAAAA]
consensusID : consensus_15932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 532 fasta sequence
[GCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGA-CGAGCAGCAAGGGGGCAGTTGGATTGGA-TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTAACAAGCTATTCC]
[-] EMBL CB965646 [GCGCTAATCTGATCTACTTGGGCCAGTGGTTACAGGGGGAGTCCTACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGTCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTAACAAGCTA ]
[-] EMBL BU673546 [ CGCGAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTATAGC AGCTATTCC]
[-] EMBL CB964974 [ CGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTG ]
[-] EMBL CB966692 [ CGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCTATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTT ]
[-] EMBL CB967347 [ CGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGTCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTT ]
[-] EMBL CB965781 [ CGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGCCGGTCGCTGTTGCTGACTTGACCAGAGA CGAGCAGCAAGGGGGCAGTTGGATTGGA TTAGAGGGTGCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCATCTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGAGAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGCGGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCATCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGGAGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGT ]
[+] EMBL D42880 [ GGGAGGCCAACGCGGGGGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGTCCGGGCGGTCGNTGTTGCTGACTTGACCAGAGATGGTGCTGCAAGGGGGCAGTTGGATTGGATTTAGAGGGTGCTTTTATATAGAGG ]
consensusID : consensus_15932#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence
[CTGTAGAAAAATAATCAGTGGCAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF331629 [CTGTAGAAAAATAATCAGTGGCAGGGGTTGTAACTATTGAAACTTTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15932#0 TTTCTCAAGCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGG 60
consensus_15932#1 --------GCGCTAATCTAATCTACTTGGGGCAGTGGTAACAGGGGGAGGCCAACGCGGG 52
consensus_15932#2 -----------------------CTGTAGAAAAATAATCAGTGGCAGGGGTTGTAACTAT 37
* * * * * * ** * ** *
consensus_15932#0 GGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGC 120
consensus_15932#1 GGAAACAGCTGACGCGCTCCGCTCCGTTCCGCTGCCGCCGTTGGCCGGCCGGGCGGTCGC 112
consensus_15932#2 TGAAACT-TTGTCTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTG--CGATTAA 94
***** ** * ** ** * *** * * ** * * ** *
consensus_15932#0 TGTTGCTGACTT--GACCAGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGT 178
consensus_15932#1 TGTTGCTGACTT--GACCAGAGACGAGCAGCAAGGGGGCAGTTGGATTGGATTAGAGGGT 170
consensus_15932#2 TCTTCCTAGCTTTCATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAAAAAA 154
* ** ** *** ** * * ** *** * ** ** *
consensus_15932#0 GCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGG---GCCATCAAGCATATCCAT 235
consensus_15932#1 GCTTTTATATAGAGGAGCACGAGGAGGAGGAGGAGGAGGAGGGCCATCAAGCATATCCAT 230
consensus_15932#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------- 197
* * * * * * * * * * * *
consensus_15932#0 CTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGA 295
consensus_15932#1 CTCCGATTCACAGATTCTTTCTGGAGATCCATCATCCAGCGAGAGCGAGAGCGAGAGGGA 290
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 GAGGAAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGC 355
consensus_15932#1 GAGGGAGAGGGAAAGCCGCCACCGCCATGTTGGGGCATCTGGTTGGGCTGGTGAAGGTGC 350
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 GGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCA 415
consensus_15932#1 GGGTGGTGAGGGGCGTCAACCTCGCCGTCCGCGACCTCCGCTCCAGCGACCCCTACGTCA 410
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 TCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGG 475
consensus_15932#1 TCGTCCGCATGGGCAAGCAGAAGTTGAAGACACGAGTCATAAAAAAGACTACCAATCCGG 470
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 AGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGTTAGACTGGAAG 535
consensus_15932#1 AGTGGAACGATGAACTCACCCTCTCGATTGAAGATCCAGCAGTTCCTGT--AACAAGCTA 528
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 TGTATGACAAAGACACATTCATCGATGATGCAATGGGCAATGCGGAGCTGGACATCCGCC 595
consensus_15932#1 TTCC-------------------------------------------------------- 532
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 CATTGGTGGAGGTTGTCAAGATGAAGATTGAGGGTGTTGCTGACAACACGGTTGTGAAGA 655
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 AAGTGGTACCCAATAGACAGAACTGCCTAGCTGAAGAGAGCACGATATATATCTCTGAGG 715
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 GGAAGGTGAAGCAAGACGTGGTTCTCAGACTAAGGGATGTGGAATGCGGGGAAATTGAGC 775
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 TCCAGCTTCAGTGGGTCGACATCCCAGGTTCTAAGGGTGTATGAACTCTGTACTCTGCCT 835
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 ATTGCTTACAGTCTTGCATAGCTCGCAAGTCCAACTCTAAGTTTATCAGTGGACAATCAA 895
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 ATAAGCAACAGCTTATATTGATGAGATTCTTTTACTGTCCTTGAGGAGGCAGATACCTCC 955
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 CAGTGCCTCCTCAATGGCTGTAAAATCATTCTTATGTTGACACAGCAAGTGTCTCGAAGA 1015
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 TCCCCCACTAGGTGTTTGGGCAGAGCAAAGTTGTACAATATGTCTGCAAAGTATAGTTTG 1075
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 GTGTTACCCTGTCTGTAGAAAAATAATCAGTGGCAGGGGTTGTAACTATTGAAACTTTGT 1135
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 CTGTCTTTCTTCTTGTACGCCAAAGACCAATGCTATCTGCGATTAATCTTCCTAGCTTTC 1195
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 ATGCAAAATTTGATTGTGGATGGTCAGCCAGTTTACATGCAATTTTGCCAAAAAAAATGT 1255
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 CATGTTATGTGGAGAACATGTTAGTGCTATTGGTCTCAGCATTGGAATAACTGCAGTCAA 1315
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 GATACACTACAGGACGACCATTTTACTAGTGGTAAATTTAGAGTTTTGAACTAGGAACAT 1375
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 CCGAACAGACGAGTATAAGACAGTATGACACCTAACTACTGCAGACACCCTTCACAATAT 1435
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 CAAACCCGGGTCAACACATGAGACGGCAGGACAATAAAATCAGTGGTAATACTTAGAAAG 1495
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 TTACCTTCTGTTTCATACGTATCAAATCATACAAATTTTAAGACTGGCCAAATTGTATAA 1555
consensus_15932#1 ------------------------------------------------------------
consensus_15932#2 ------------------------------------------------------------
consensus_15932#0 AAAGTTAGTAAATATCTATAACAAACGGTGGCGCTAATTAGCGCGTTGGGAGCAAAAA 1613
consensus_15932#1 ----------------------------------------------------------
consensus_15932#2 ----------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||