These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15935#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 620 fasta sequence [TGGACTGAGGAGTGAAAGCTTGTCGCAACTCGCAACCCAATCATCCAATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGTGGACATGGATCGTCATTTCTGTTTTGGCATGTAATCGACCAGCATCGAGAAAAGAAAGAAAACTGTTCCAAGCATTTCTT] [+] EMBL CF329631 [TGGACTGAGGAGTGAAAGCTTGTCGCAACTCGCAACCCTAT ATCC ATTCCC CACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGANTTATTCGGTCaaaaaaa ] [+] EMBL OSC26871 [ ctAATCATCCAATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAG CCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTNCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCG ACTTGAAACTGAATGAGTTAATTGTGTCTATTGTG ] [+] EMBL C98146 [ AATCATCCAATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCAAAAAAAAaaaa ] [+] EMBL OS0794A [ AATCATCCAATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAG CCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGNTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAA ] [+] EMBL CF308306 [ ACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAA ATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGTGGACATGGATCGTCATTTCTGTTTTGGCATGTAATCGACCAGCATCGAGAAAAGAAAGAAAACTGTTC ] [+] EMBL BE039635 [ GAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGTGGACATGGATCGTCATTT ] [+] EMBL BE530978 [ CGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGTGGACATGGATCGTCATTTCTGTTTTGGCATGTAATCGACCAGCATCGAGAAAAGAAAGAAAACTGTTCCAAGCATTTCTT] [-] EMBL CF308305 [ CGCCATGGCGGATGAAGAACCTGTTGATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAA ATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGTGGACATGGATCGTCATTTCTGTTTTGGCATGTAATCGACCAGCATCGAGAAAAGAAAGAAAACTGTTCCAAGCAaaaaa ] [+] EMBL AU225749 [ gccGCTCCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCT AGCgg ] consensusID : consensus_15935#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 555 fasta sequence [AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAA-AATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT-CCGTCGATCG-CCAT----GGCGGATGAAGAACCTGTTGAT-CCAAAGAAGTACCTTGAGGAG-CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT-ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT-GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT-CGCACTTGAAACTGAATGAGTTAAT-TGTGTCTATTGTGACTG-TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF281956 [AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAA AATTCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGC ] [+] EMBL CF317097 [ gaGACCTGACTGGACTG AGGAGT GAAACAATT CCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGAT ] [-] EMBL CF329630 [ TCCCACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCAAAAAAAA ] [+] EMBL CF318680 [ CACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAATAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCC ] [+] EMBL AU058237 [ ACACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCAT ] [+] EMBL AK060396 [ ACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGAT ] [+] EMBL CF316160 [ ACGGACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTGTTTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCA ] [+] EMBL AU065588 [ ACTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACNCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAA NCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCNAATGATGACCGGCTGNTACTTTTGGATCAGTGACTTGTTCTATTTGCGT ACCTTGGT CGCACTTG AACTGAATGAG TAATGTG GCCAATTGTGACTG GTTGGG ] [+] EMBL AU089712 [ CGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATAAAAAAaaaa ] [+] EMBL CF309213 [ CAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTT ] [+] EMBL AU173058 [ TCCTCCTCCCATTCTCGATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAGCCGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCA ] [+] EMBL AU065592 [ GATCGCGAGGAGGAGGAGACCCCGCCCGCCAGCCACCCCGGAT CCGTCGATCG CCATGTGGGGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAA CCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTTCCGCACTTG AACTGNATGAGTT ] [+] EMBL AU029962 [ gaATCGCGAGGAGGAGGANACCCCGCCCGCCAGCCACCCCGGATCCCGTCNATCGCCCATGTGGGGCGGATGAAGAACCTGTTGATCCCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAAAAAA ] [-] EMBL CF280163 [ CACCCCGGAT CCGTCGATCG CCAT GGCGGATGAAGAACCTGTTGAT CCAAAGAAGTACCTTGAGGAG CGCTGCAAGCCCCAGTGCGTAAAGCCACTCT ATGAGTATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCAAAAAAAA ] [+] EMBL AU029943 [ AGTNCCTTGAGGAG CGCTGCAAGCCCCAGTGCGTTAAGCCACTNTAATGGGTTTGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATNCT GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCNCCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTANTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCNCCATTTCCCATATCAAAGNATGTGGNTTTATTCGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BE228798 [ GAGGATA T GGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGCTCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGTT CGCACTTGAAACTGAATGAGTTAAT TGTGTCTATTGTGACTG TTTGGGTTTCATGACTTGTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCccca ] consensusID : consensus_15935#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [AAAAACCTTGTTGATCCAAAAAAGTCCCTTGAGGAGCGTTGCAAGCCCCAGTGGGTAAACCCCTTTTATGAGTATAAAAAGTGCGTCAAAAAAGTGAAAAAGAATAATATTGGGCATAAACATTGCATTGGGCAATATTTCGATTATTGGTCAGGCATTGACAAATGTGTAGCCCCGAAACCCCTTAAAAAGCTCAAATAATGCCCGGCTGCTACTTTTGGATCAGTGACTTGTTTTATTTGGGTACCCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTGGGGTTTCATGACTTGTAATAAAACCCCCCTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF281957 [AAAAACCTTGTTGATCCAAAAAAGTCCCTTGAGGAGCGTTGCAAGCCCCAGTGGGTAAACCCCTTTTATGAGTATAAAAAGTGCGTCAAAAAAGTGAAAAAGAATAATATTGGGCATAAACATTGCATTGGGCAATATTTCGATTATTGGTCAGGCATTGACAAATGTGTAGCCCCGAAACCCCTTAAAAAGCTCAAATAATGCCCGGCTGCTACTTTTGGATCAGTGACTTGTTTTATTTGGGTACCCTTGTTCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTGGGGTTTCATGACTTGTAATAAAACCCCCCTTTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15935#1 ---------AATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAATTCCCACACGGA 51 consensus_15935#2 ------------------------------------------------------------ consensus_15935#0 TGGACTGAGGAGTGAAAGCTTGTCGCAACTCGCAACCCAATCATCCAATTCCCACACGGA 60 consensus_15935#1 CTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGA 111 consensus_15935#2 ------------------------------------------------------------ consensus_15935#0 CTCTGCTACCATCGGAGTCAGATCCATTCCTCCTCCCATTCTCGATCGCGAGGAGGAGGA 120 consensus_15935#1 GACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTG 171 consensus_15935#2 -----------------------------------------------AAAAACCTTGTTG 13 consensus_15935#0 GACCCCGCCCGCCAGCCACCCCGGATCCGTCGATCGCCATGGCGGATGAAGAACCTGTTG 180 ** * * ***** consensus_15935#1 ATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGT 231 consensus_15935#2 ATCCAAAAAAGTCCCTTGAGGAGCGTTGCAAGCCCCAGTGGGTAAACCCCTTTTATGAGT 73 consensus_15935#0 ATCCAAAGAAGTACCTTGAGGAGCGCTGCAAGCCCCAGTGCGTAAAGCCACTCTATGAGT 240 ******* **** ************ ************** ***** ** * ******* consensus_15935#1 ATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGC 291 consensus_15935#2 ATAAAAAGTGCGTCAAAAAAGTGAAAAAGAATAATATTGGGCATAAACATTGCATTGGGC 133 consensus_15935#0 ATGAGAAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGC 300 ** * *********** * **** * *** ** *** ************ **** ***** consensus_15935#1 AATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGC 351 consensus_15935#2 AATATTTCGATTATTGGTCAGGCATTGACAAATGTGTAGCCCCGAAACCCCTTAAAAAGC 193 consensus_15935#0 AATATTTCGACTATTGGTCATGCATTGACAAATGTGTAGCACCGAAACTCCTTGAGAAGC 360 ********** ********* ******************* ******* **** * **** consensus_15935#1 TCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGT 411 consensus_15935#2 TCAAATAATGCCCGGCTGCTACTTTTGGATCAGTGACTTGTTTTATTTGGGTACCCTTGT 253 consensus_15935#0 TCAAATGATGACCGGCTGCTACTTTTGGATCAGTGACTTGTTCTATTTGCGTAACCTTGT 420 ****** *** ******************************* ****** *** ****** consensus_15935#1 TCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTT 471 consensus_15935#2 TCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTGGGGTTTCATGACTT 313 consensus_15935#0 TCGCACTTGAAACTGAATGAGTTAATTGTGTCTATTGTGACTGTTTGGGTTTCATGACTT 480 ********************************************* ************** consensus_15935#1 GTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCAAAAAAAAAA 531 consensus_15935#2 GTAATAAAACCCCCCTTTTCCCA---------------------------AAAAAAAAAA 346 consensus_15935#0 GTAATAAAAGCCACCATTTCCCATATCAAAGCATGTGGATTTATTCGGTCTGAGCATTGT 540 ********* ** ** ******* * * consensus_15935#1 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 555 consensus_15935#2 AAAAAAAAAAAAAAAAAA------------------------------------------ 364 consensus_15935#0 GGACATGGATCGTCATTTCTGTTTTGGCATGTAATCGACCAGCATCGAGAAAAGAAAGAA 600 * * * * consensus_15935#1 -------------------- consensus_15935#2 -------------------- consensus_15935#0 AACTGTTCCAAGCATTTCTT 620 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||