These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 988 fasta sequence [TGCAAATTTGTCTATATACAAAATTTGTCTCCACGTTTTCTTGGATAGTTAGTTGCTCACCCGATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC-TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC-CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG-AGGGTGACGATGATCCT-GCCGCTCACCGGCG-AGCAGT-ACTC-GG-AC-AAGGTGACGG-AGAACTGCGT-CGCGG-CGT-GG-AA-GGCCG-CCGGCGTGTACACGGACGCCGAGGGCGCGGCCGCGGACAAGTTCAAGGAGGCCTTCAAGCCCCACAGCTTCCCTCCGGGCGCGTCCATCCTCTTCACCCACTCCCCGCCCGG-CGTCCTCACCGTCGCGTTCTCCAAGGACTCGTCGGTGCCAGAGGGCGCCGTGGCGGCGGCGGCGATCGAGAACAGGGCGCTCTGCGAGGCGGTGCTGGATTCCATCATCGGCGAGCACGGGGT-CTCGCCGGCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAAAGGAGAAATCGCGGCTGTTCTTCCGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAGGGGCCGCCTGATGTTAGAGGGGCCGTT] [+] EMBL AU164550 [TGCAAATTTGTCTATATACAAAATTTGTCTCCACGTTTTCTTGGATAGTTAGTTGCTCACCCGATCCTGTATCCATGGCGGCCGTGTCGNAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCT GCCGCTCACCGGCG AGCAGT ACTC GG AC AAGGTGACGG AGAACTGCGT CGCGG CGT GG AA GGCCG CCGGCGTGTACACGGA ] [+] EMBL AK061390 [ GTCTCCACGTTTTCTTGGATAGTTAGTTGCTCACCCGATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCT GCCGCTCACCGGCG AGCAGT ACTC GG AC AAGGTGACGG AGAACTGCGT CGCGG CGT GG AA GGCCG CCGGCGTGTACACGGACGCCGAGGGCGCGGCCGCGGACAAGTTCAAGGAGGCCTTCAAGCCCCACAGCTTCCCTCCGGGCGCGTCCATCCTCTTCACCCACTCCCCGCCCGG CGTCCTCACCGTCGCGTTCTCCAAGGACTCGTCGGTGCCAGAGGGCGCCGTGGCGGCGGCGGCGATCGAGAACAGGGCGCTCTGCGAGGCGGTGCTGGATTCCATCATCGGCGAGCACGGGGT CTCGCCGGCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAAAGGAGAAATCGCG ] [+] EMBL AU070693 [ TCTCCACGTTTTCTTGGATAGTTAGTTGCTCACCCGATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGANGANGGCGCGGCCGTGCCGGCGC TGGCCAACAANTGGGCCGGCAANTCCGCCGACGAGCTCGCCGCCGACGCCGCGCTTCTTCCGCGACGTCGTCACCGGCGATTTCCAGAAGTTCACGCANGGTGACGATGATCCT NCCGATCACCGGCGCACCAGTAACTC GGCACAAACGTGANGGCACAACTNCGTACGCGGCCGT GGCAACGCCCGACCGGacatg ] [+] EMBL AU070940 [ TGGATAGTTAGTTGCTCACCCGATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCTGGCCGCTCACCGGCG AGCAGT ACTCGGG AC AAGGTGACGG AGAACTGCGT CGCGG CGTGGG AA GGCCG CCGGCGTGTACACGGga ] [+] EMBL AK104791 [ TCACCCGATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCT GCCGCTCACCGGCG AGCAGT ACTC GG AC AAGGTGACGG AGAACTGCGT CGCGG CGT GG AA GGCCG CCGGCGTGTACACGGACGCCGAGGGCGCGGCCGCGGACAAGTTCAAGGAGGCCTTCAAGCCCCACAGCTTCCCTCCGGGCGCGTCCATCCTCTTCACCCACTCCCCGCCCGG CGTCCTCACCGTCGCGTTCTCCAAGGACTCGTCGGTGCCAGAGGGCGCCGTGGCGGCGGCGGCGATCGAGAACAGGGCGCTCTGCGAGGCGGTGCTGGATTCCATCATCGGCGAGCACGGGGT CTCGCCGGCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAA ] [+] EMBL AU064060 [ ATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGT NTGTTCCCGCCGGTGGCCCGCCCGCNGGGGTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTNTNAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCNTG CGGCGCTTGGCCAANAAGTGGGCCGGCAAGTCCGCCGACNAGCTCGCCGCCNACGCCGC CTTCTTCCGCAACGTCGTCACCGGCAATTTCAAGAAGTTCACG AGGGTNACGATGATCCT NCCGCTCACCGGCN AGCAGT ACTC GG AC AAGNTG ] [+] EMBL AU094193 [ ATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCT GCCGCTCACCGGCG AGCAGT ACTC GG AC AAGGTGACGG AGAACTGCGT CGCGG CGT GG AA GGCCG CCGGCGTGTACACGGA ] [+] EMBL AU182969 [ ATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCT GCCGCTCACCGGCG AGCAGT ACTC GG AC AAGGTGACGG AGAACTGCGT CGCGG CGT GG AA GGCCG CCGGCGTGTACACGGACGCCGAGGGCGCGGCCGCc ] [+] EMBL AU065055 [ ATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGNCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCT GCCGNTCACCGGCG AGCAGT ACTN GG ACAAAGGTGACGG AGAACTNCGT CGCGG CGTNGG AA GGCCG ] [+] EMBL CB656535 [ TATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCT GCCGCTCACCGGCG AGCAGT ACTC GG AC AAGGTGACGG AGAACTGCGT CGCGG CGT GG AA GGCCG CCGGCGTGTACACGGACGCCGAGGGCGCGGCCGCGGACAAGTTCAAGGAGGCCTTCAAGCCCCACAGCTTCCCTCCGGGCGCGTCCATCCTCTTCACCCACTCCCCGCCCGG CGTCCTCACCGTCGCGTTCTCCAAGGACTCGTCGGTGCCAGAGGGCGCCGTGGCGGCGGCGGCGATCGAGAACAGGGCGCTCTGCGAGGCGGTGCTGGATTCCATCATCGGCGAGCACGGGGT CTCGCCGGCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACA ] [+] EMBL CB679371 [ ATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCATGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCT GCCGCTCACCGGCG AGCAGT ACTC GG AC AAGGTGACGG AGAACTGCGT CGCGG CGT GG AA GGCCG CCGGCGTGTACACGGACGCCGAGGGCGCGGCCGCGGACAAGTTCAAGGAGGCCTTCAAGCCCCACAGCTTCCCTCCGGGCGCGTCCATCCTCTTCACCCACTCCCCGCCCGG CGTCCTCACCGTCGCGTTCTCCAAGGACTCGTCGGTGCCAGAGGGCGCCGTGGCGGCGGCGGCGATCGAGAACAGGGCGCTCTGCGAGGCGGTGCTGGATTCCATCATCGGCGAGCACGGGGT CTCGCCGGCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCGTCCTACACTTCTTGTACAC ] [-] EMBL CB656536 [ TGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCT GCCGCTCACCGGCG AGCAGT ACTC GG AC AAGGTGACGG AGAACTGCGT CGCGG CGT GG AA GGCCG CCGGCGTGTACACGGACGCCGAGGGCGCGGCCGCGGACAAGTTCAAGGAGGCCTTCAAGCCCCACAGCTTCCCTCCGGGCGCGTCCATCCTCTTCACCCACTCCCCGCCCGG CGTCCTCACCGTCGCGTTCTCCAAGGACTCGTCGGTGCCAGAGGGCGCCGTGGCGGCGGCGGCGATCGAGAACAGGGCGCTCTGCGAGGCGGTGCTGGATTCCATCATCGGCGAGCACGGGGT CTCGCCGGCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAAAGGAGAAATCGCGGCTGTTCTTCCGTTCAAAACAAAAAAga ] [-] EMBL CB679372 [ TGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCT GCCGCTCACCGGCG AGCAGT ACTC GG AC AAGGTGACGG AGAACTGCGT CGCGG CGT GG AA GGCCG CCGGCGTGTACACGGACGCCGAGGGCGCGGCCGCGGACAAGTTCAAGGAGGCCTTCAAGCCCCACAGCTTCCCTCCGGGCGCGTCCATCCTCTTCACCCACTCCCCGCCCGG CGTCCTCACCGTCGCGTTCTCCAAGGACTCGTCGGTGCCAGAGGGCGCCGTGGCGGCGGCGGCGATCGAGAACAGGGCGCTCTGCGAGGCGGTGCTGGATTCCATCATCGGCGAGCACGGGGT CTCGCCGGCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAGAGGAGAAATCGCGGCTGTT ] [+] EMBL AU095592 [ TGGCCAAGAAGTGGGCCGGNAAGTCCGCCGACGAGCTCGCCGCCGACGCCGC CTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACG AGGGTGACGATGATCCT GCCGCTCACCGGCG AGCNGT ACTC GG AC AAGGTGACGG AGAACTGCGT CGCGG CGT GG AA NTCCG CCGGCGTGTACACGGACGCCGAa ] [+] EMBL AU089819 [ CAAGGAGGCCTTCAAGCCCCACAGCTTCCCTCCGGGCGCGTCCATCCTCTTCACCCACTCCCCGCCCGG CGTCCTCACCGTCGCGTTCTCCAAGGACTCGTCGGTGCCAGAGGGCGCCGTGGCGGCGGCGGCGATCGAGAACAGGGCGCTCTGCGAGGCGGTGCTGGATTCCATCATCGGCGAGCACGGGGT CTCGCCGGCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAAAGGAGAAATCGCGGCTGTTCTTCCGTTCAAAAAAAAAAAAAAAANAAAAAAAAA ] [+] EMBL CB965041 [ CAAGGAGGCCTTCAAGCCCCACAGCTTCCCTCCGGGCGCGTCCATCCTCTTCACCCACTCCCCGCCCGG CGTCCTCACCGTCGCGTTCTCCAAGGACTCGTCGGTGCCAGAGGGCGCCGTGGCGGCGGCGGCGATCGAGAACAGGGCGCTCTGCGAGGCGGTGCTGGATTCCATCATCGGCGAGCACGGGGT CTCGCCGGCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAAAGGAGAAATCGCGGCTGTTCTTCCGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAGAGGGGCCGCCTGATGTTAGAGGGGCCGTT] [-] EMBL OSS16359A [ CGGGCGCGTCAATCCTCTTAACCAACTCCCCGCCCGGCCGTCCTNACCGTCGCGTTCTCCAAGGACTCGTCGGTGCCAGAGGGC CCGTGGCGGCGGCGGCGATCGAGAACAGGGCG TCTGCGAGGCGGTGCTGGATTCCATCATCGGCGAGCACGGGGT CT NCCGGCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGGCGGAGCCCGCGCCGGTGTCCGCGTNAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAAAGGAGAAATCGCGGCTGTTCTT ] [+] EMBL AU032923 [ CGGTGCTGGATTCCANCATCGGCGAACACGGGGTCCTC CCGGCGGCGAANCGGAACATAGCGGCCCGCGTCTCGCANCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGGCGGANCCCGCGCCGGTGTCCNCGTGAAAATCGAGCTNCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAAAGGAGAAATCGCGGCTGTTCTTCCGTTCAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU033222 [ ATTCCATCATCGGCGAGCACGGGGTCCTC CCGNCGGCGAAGCGGAGCATAGCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGC GCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAAAGGAGAAATCGCGGCTGTTCTTCCGTTCCATCTCTGAAAAAAA ] [+] EMBL CB683443 [ CGGCGGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAAAGGAGAAATCGCGGCTGT ] consensusID : consensus_15945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [CCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGCTGTCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGGCTTCTTCCGCGACGTCTGTCCCGGGTATTTCCAGAGGTCTCGAGGGGTGGACGGTGATCCTTGCCGCTCCACCGGCTAGGAGTACTCGGGCTAGGTGCTGTAGAACTGTGTCGCTTCCCGTATAGTCGCCCTGCGTGTTCTCTCACTCCGCTAGTTCCGCTCCCCGCGTACTGTTAGGATGCGGTTCATTCCTCCACTCGGCTGCCGAGAGTGGGGTCTCTGGTCTTGCGCATCGACCGTGCCCTGTGTCGCTCCCCCCCTTTGCCCCTCATGTCGCTGTCCGCGCCACCTCTTTCTCCTCTGTCGACCCGTTATTAATCTGACTCGCCACGCTCGCGCGGATGCATCCCGCGCTGGTAACCTGGCACCTTCGCTCCG] [+] EMBL CA755706 [CCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGCTGTCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGGCTTCTTCCGCGACGTCTGTCCCGGGTATTTCCAGAGGTCTCGAGGGGTGGACGGTGATCCTTGCCGCTCCACCGGCTAGGAGTACTCGGGCTAGGTGCTGTAGAACTGTGTCGCTTCCCGTATAGTCGCCCTGCGTGTTCTCTCACTCCGCTAGTTCCGCTCCCCGCGTACTGTTAGGATGCGGTTCATTCCTCCACTCGGCTGCCGAGAGTGGGGTCTCTGGTCTTGCGCATCGACCGTGCCCTGTGTCGCTCCCCCCCTTTGCCCCTCATGTCGCTGTCCGCGCCACCTCTTTCTCCTCTGTCGACCCGTTATTAATCTGACTCGCCACGCTCGCGCGGATGCATCCCGCGCTGGTAACCTGGCACCTTCGCTCCG] consensusID : consensus_15945#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 446 fasta sequence [ATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGCTTGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGCCTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACGAGGGTGACGATGATCCTGCCGTTNACCGGCGAGCAGTACTTCGGACAAAGGTGACGGAGAACTNCGTCGCGGCGTTGAAGGCCGCC-GCGTGTANAAGGACGCCGAAGGCGCGGCGCAACGNGTTGGAGTTCAGTTTTTTTNCCTTAAGTGAGGTT] [+] EMBL AU065056 [ATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGCTTGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGCCTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACGAGGGTGACGATGATCCTGCCGTTNACCGGCGAGCAGTACTTCGGACAAAGGTGACGGAGAACTNCGTCGCGGCGTTGAAGGCCGCC GCGTGTANAAGGACGCCGAAGGCGCGGCGCAACGNGTTGGAGTTCAGTTTTTTTNCCTTAAGTGAGGTT] [+] EMBL AU181161 [ATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGT GTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGC TGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGCCTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACGAGGGTGACGATGATCCTGCCGTTCACCGGCGAGCAGTAC TCGGACAAAGGTGACGGAGAACTTCGTCGCGGCGTTGAAGGCCGCCGGCGTGTANAAGAAC ] consensusID : consensus_15945#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [GNCTGACGNGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCANGNCCACTTCCTCGCCGGCGCAGGTTTGTTTGTGTTTGCGTTGTGTGTTCCGTGTCAGTGGAGAAGTGGAAATGCCGTGCAAGCGAACTTGCTTGCTGGTTTGATCGATCCGTCGTGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGCTGGCCAAGAAGTGGGCCGGCAAGTCCGNCGAC] [+] EMBL OSS15410A [GNCTGACGNGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGCTCCGGCCANGNCCACTTCCTCGCCGGCGCAGGTTTGTTTGTGTTTGCGTTGTGTGTTCCGTGTCAGTGGAGAAGTGGAAATGCCGTGCAAGCGAACTTGCTTGCTGGTTTGATCGATCCGTCGTGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGGCCGTGCCGGCGCTGGCCAAGAAGTGGGCCGGCAAGTCCGNCGAC] consensusID : consensus_15945#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [GCCCAAGAAGTGGNCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGCCTTCTTCCGCGACGTCGTCACCGGTAACTCATCTCGCTAAATTTGTTGCTCGTGTCGACGGGCGGCGCGACATGACATGGGCGTCGTCTCGCGTTGCAGGCGATTTCGAGAAGTTCACGAGGGTGACGATGATCCTGCCGCTCACCGGCGAGCAGTACTCGGACAAGGTGACGGAGAACTGCGTCGCGGCGTGGAAGGCCGCCGGCGTGTACACGGACGCCGAGG] [+] EMBL AU098353 [GCCCAAGAAGTGGNCCGGCAAGTCCGCCGACGAGCTCGCCGCCGACGCCGCCTTCTTCCGCGACGTCGTCACCGGTAACTCATCTCGCTAAATTTGTTGCTCGTGTCGACGGGCGGCGCGACATGACATGGGCGTCGTCTCGCGTTGCAGGCGATTTCGAGAAGTTCACGAGGGTGACGATGATCCTGCCGCTCACCGGCGAGCAGTACTCGGACAAGGTGACGGAGAACTGCGTCGCGGCGTGGAAGGCCGCCGGCGTGTACACGGACGCCGAGG] consensusID : consensus_15945#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 275 fasta sequence [ACAGGGCGCTCTNCGAGNCGGTGCTGGATTCCATCATCGGCGAGCACGGGGTCTCCCGACGGCGAAGCGGAGCATANCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAAAGGAGAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096771 [ACAGGGCGCTCTNCGAGNCGGTGCTGGATTCCATCATCGGCGAGCACGGGGTCTCCCGACGGCGAAGCGGAGCATANCGGCCCGCGTCTCGCAGCTCCTGAAGGCGGAATCCACCGGCGACGTGGCGGCGCGGAGCCCGCGCCGGTGTCCGCGTGAAAATCGAGCTGCGAATTAACCGCGCATCTAAGAGCTCCTCCTACACTTCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAAAGGAAAGGAGAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15945#0 TGCAAATTTGTCTATATACAAAATTTGTCTCCACGTTTTCTTGGATAGTTAGTTGCTCAC 60 consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 ------------------------------------------------------------ consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------------------------ consensus_15945#0 CCGATCCTGTATCCATGGCGGCCGTGTCGGAGGTGGAGGTCGACGGCGTCGTGTTCCCGC 120 consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 ------------------------------------------------------------ consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------------------------ consensus_15945#0 CGGTGGCCCGCCCGCCGGGCTCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGG 180 consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 ------------------------------------------------------------ consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------------------------ consensus_15945#0 GAGTGGAGATCGCCGGCAACTTCATCAAGTTCACGGCCATCGGCGTGTACCTGGAGGAGG 240 consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 ------------------------------------------------------------ consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------------------------ consensus_15945#0 GCGCGGCCGTGCCGGCGCTGGCCAAGAAGTGGGCCGGCAAGTCCGCCGACGAGCTCGCCG 300 consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 ------------------------------------------------------------ consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------------------------ consensus_15945#0 CCGACGCCGCCTTCTTCCGCGACGTCGTCACCGGCGATTTCGAGAAGTTCACGAGGGTGA 360 consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 ------------------------------------------------------------ consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------------------------ consensus_15945#0 CGATGATCCTGCCGCTCACCGGCGAGCAGTACTCGGACAAGGTGACGGAGAACTGCGTCG 420 consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 ------------------------------------------------------------ consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------------------------ consensus_15945#0 CGGCGTGGAAGGCCGCCGGCGTGTACACGGACGCCGAGGGCGCGGCCGCGGACAAGTTCA 480 consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 ------------------------------------------------------------ consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------------------------ consensus_15945#0 AGGAGGCCTTCAAGCCCCACAGCTTCCCTCCGGGCGCGTCCATCCTCTTCACCCACTCCC 540 consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 ------------------------------------------------------------ consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------------------------ consensus_15945#0 CGCCCGGCGTCCTCACCGTCGCGTTCTCCAAGGACTCGTCGGTGCCAGAGGGCGCCGTGG 600 consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 ------------------------------------------------------------ consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------ATCCTGTATCCATGGCGG 18 consensus_15945#0 CGGCGGCGGCGATCGAGAACAGGGCGCTCTGCGAGGCGGTGCTGGATTCCATCATCGG-- 658 consensus_15945#5 ------------------ACAGGGCGCTCTNCGAGNCGGTGCTGGATTCCATCATCGG-- 40 consensus_15945#4 -------------GCCCAAGAAGTGGNCCGGCAAGTCCGCCGACGAGCTCGCCGCCGA-- 45 consensus_15945#1 CCGTGTCGGAGGTGGAGGTCGACGG-CGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGC 59 consensus_15945#3 ----------------GNCTGACGNGCGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGC 44 consensus_15945#2 CCGTGTCGGAGGTGGAGGTCGACGG-CGTCGTGTTCCCGCCGGTGGCCCGCCCGCCGGGC 77 * * * * ** consensus_15945#0 --CGAGCACGGGG-TCTCGCCGGCGGCGAAGCGGAGCATAGCGGCCCGC--GTCTCGCAG 713 consensus_15945#5 --CGAGCACGGGG-TCTC-CCGACGGCGAAGCGGAGCATANCGGCCCGC--GTCTCGCAG 94 consensus_15945#4 --CGC-CGCCTTC-TTCC-GCGACGTCGTCACCG-GTAACTCATCTCGCTAAATTTGTTG 99 consensus_15945#1 TCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAAC 119 consensus_15945#3 TCCGGCCANGNCCACTTCCTCGCCGGCGCAGGTTTGTTTGTGTTTG----CGTTGTGTGT 100 consensus_15945#2 TCCGGCCACGCCCACTTCCTCGCCGGCGCAGGTGTGAGGGGAGTGGAGATCGCCGGCAAC 137 ** * * ** ** ** * consensus_15945#0 CTCCT---GAAGGCGGAATCCACCG-GCGACGTGGCGGCGGCGGAGCCCGC-GCCGGTGT 768 consensus_15945#5 CTCCT---GAAGGCGGAATCCACCG-GCGACGTGGCGGCG-CGGAGCCCGC-GCCGGTGT 148 consensus_15945#4 CTCGT---GTCGACGGGCGGCGCGACATGACATGG--GCGTCGTCTCGCGTTGCAGGCGA 154 consensus_15945#1 TTCATCAAGTTCACGGCCATCGGCGTGTACC-TGGAGGAGGGCGCGGCCGT-GCCGGCG- 176 consensus_15945#3 TCCGT---GTCAGTGGAGAAGTGGAAATGCCGTGCAAGCGAACTTG--CTT-GCTGGTT- 153 consensus_15945#2 TTCATCAAGTTCACGGCCATCGGCGTGTACC-TGGAGGAGGGCGCGGCCGT-GCCGGCGC 195 * * * ** * ** * * * ** ** consensus_15945#0 CCGCGTGAAAATCGAG-------CTGCGAATTAACCGCGCATCTAAGAGC------TCCT 815 consensus_15945#5 CCGCGTGAAAATCGAG-------CTGCGAATTAACCGCGCATCTAAGAGC------TCCT 195 consensus_15945#4 TTTCGAGAAGTTCACGAGGGTGACGATGATCCTGCCGCTCACCGGCGAGCAG----TACT 210 consensus_15945#1 CTGTCCAAGAAGTGGGCCGGCA-AGTCCGCCGACGAGCTCGCCGCCGACGCCGGCTTCTT 235 consensus_15945#3 TGATCGATCCGTCGTGCAGGTG-TGAGGGGAGTGGAGATCGCCGGCAAC----------T 202 consensus_15945#2 TTGGCCAAGAAGTGGGCCGGCA-AGTCCGCCGACGAGCTCGCCGCCGACGCCGCCTTCTT 254 * * * * * * consensus_15945#0 CCTACACT----TCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAA-AGGA 870 consensus_15945#5 CCTACACT----TCTTGTACACTTCTACTGCCCTCGTGTTTGACAATGAAATAAA-AGGA 250 consensus_15945#4 CGGACAAGG---TGACGGAGAACTGCGTCGCGGCGTGGAAGGCCGCCGGCGTGTACACGG 267 consensus_15945#1 CCGCGACGTCTGTCCCGGGTATTTCCAGAGGTCTCGAGGGGTGGACGGTGATCCTTGCCG 295 consensus_15945#3 TCATCAAGT---TCACGGCCATCGGCGTGTACCTGGAGGAGGGCGCGG----CCGTGCCG 255 consensus_15945#2 CCGCGACGTC-GTCACCGGCGATTTCGAGAAGTTCACGAGGGTGACGATGA-TCCTGCCG 312 * * * consensus_15945#0 AAGGAGAAATCGCGGCTGTTCTTCCGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 930 consensus_15945#5 AAGGAGAAA--------------------AAAAAAAAAAAAAAAA--------------- 275 consensus_15945#4 ACGCCGAGG--------------------------------------------------- 276 consensus_15945#1 CTCCACCGGCTAGGA-GTACTCGGGC--TAGGTGCTGTAGAACTGTGTCGCTTCCCGTAT 352 consensus_15945#3 G--CGCTGGCCAAGAAGTGGGCCGGC--AAGT--CCGNCGAC------------------ 291 consensus_15945#2 TT-NACCGGCGAGCA-GTACTTCGGACAAAGGTGACGGAGAACTNCGTCGCGGCGTTGAA 370 consensus_15945#0 AAAAAAAAAAAAAAAAAAAAAAAAAACAGAGGGGCCGCCTGATGTTAGAGGGGCCGTT-- 988 consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 AGTCGCCCTGCGTGTTCTCTCACTCCGCTAGTTCCGCTCCCCGCGTACTGTTAGGATGCG 412 consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 GGCCGCCGCGTGTANAAGGACGCCGAAGGCGCGGCGCAACGNGTTGGAGTTCAGTTTTTT 430 consensus_15945#0 ------------------------------------------------------------ consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 GTTCATTCCTCCACTCGGCTGCCGAGAGTGGGGTCTCTGGTCTTGCGCATCGACCGTGCC 472 consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 TNCCTTAAGTGAGGTT-------------------------------------------- 446 consensus_15945#0 ------------------------------------------------------------ consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 CTGTGTCGCTCCCCCCCTTTGCCCCTCATGTCGCTGTCCGCGCCACCTCTTTCTCCTCTG 532 consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------------------------ consensus_15945#0 ------------------------------------------------------------ consensus_15945#5 ------------------------------------------------------------ consensus_15945#4 ------------------------------------------------------------ consensus_15945#1 TCGACCCGTTATTAATCTGACTCGCCACGCTCGCGCGGATGCATCCCGCGCTGGTAACCT 592 consensus_15945#3 ------------------------------------------------------------ consensus_15945#2 ------------------------------------------------------------ consensus_15945#0 --------------- consensus_15945#5 --------------- consensus_15945#4 --------------- consensus_15945#1 GGCACCTTCGCTCCG 607 consensus_15945#3 --------------- consensus_15945#2 --------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||