These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15949#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1242 fasta sequence [TCCTTTTTTTTTTTGATATAATGACA-TAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACT-GGAGCATGTGCGCGGCGGCGGGGCAGGGGATCTGCCATGGCCGGAGCAGCGGGTCGTCGGGGGGGCACTCCTCCTGGATGTCCATGGCGACGCCGCTGAACTCCTCGACGACGCGGAGCACCTCGTTGACGCTGCGCAGCCTGTCGCCGAGCTCGGCGGCGCGCGCCCGGAGCACCGTGT-TCTCCTGCTCCACGCGCGCGTACTGCCCGGCGATTTCGCTGGC-GCGCGCCAGCACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA-TTTCCACAAACACCTTGTCTAC-AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA-AGAAGAACACGAAGAAGAAGAACA-ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT-CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCA] [+] EMBL CB653185 [TCCTTTTTTTTTTTGAGATAATGACANTAGTTTATAACATTACCTAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACT GGAGCATGTGCGCGGCGGCGGGGCAGGGGATCTGCCATGGCCGGAGCAGCGGGTCGTCGGGGGGGCACTCCTCCTGGATGTCCATGGCGACGCCGCTGAACTCCTCGACGACGCGGAGCACCTCGTTGACGCTGCGCAGCCTGTCGCCGAGCTCGGCGGCGCGCGCCCGGAGCACCGTGT TCTCCTGCTCCACGCGCGCGTACTGCCCGGCGATTTCGCTGGC GCGCGCCAGCACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA AGAAGAAC ] [-] EMBL AU093772 [ TTTTTGATATAATGACA TAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGNTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACTGGGAGCATGTNCGCGGCGGCGGGGCAGGGGATCTG ] [+] EMBL CB655864 [ ATATAATGACA TAGTTTCTTACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACT GGAGCATGTGCGCGGCGGCGGGGCAGGGGATCTGCCATGGCCGGAGCAGCGGGTCGTCGGGGGGGCACTCCTCCTGGATGTCCATGGCGACGCCGCTGAACTCCTCGACGACGCGGAGCACCTCGTTGACGCTGCGCAGCCTGTCGCCGAGCTCGGCGGCGCGCGCCCGGAGCACCGTGT TCTCCTGCTCCACGCGCGCGTACTGCCCGGAGATTTCGCTGGC GCGCGCCAGCACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCG ] [+] EMBL CB649170 [ AAAGAAGATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCCCTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACT GGAGCATGTGCGCGGCGGCGGGGCAGGGGATCTGCCATGGCCGGAGCAGCGGGTCGTCGGGGGGGCACTCCTCCTGGATGTCCATGGCGACGCCGCTGAACTCCTCGACGACGCGGAGCACCTCGTTGACGCTGCGCAGCCTGTCGCCGAGCTCGGCGGCCCGCGCCCGGAGCACCGTGT TCTCCTGCTCCACGCGCGCGTACTGCCCGGCGATTTCGCTGGCGGCCCGGCAACACGCGCGCG ] [-] EMBL CA753888 [ CGGAGCACCTCGTGNACGCTGCGCAGCCTGTCGCCGAGCTCGGCGGCGCGCGCCCGGAGCACCGTGTCTC CCTGCTCCACGCGCGCGTACTGCCCGGCGATTTCGCTGGC GCGCGCCAGCACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA AGAAGAACACGAAGAAGAAGAACA ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTAAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATG ] [-] EMBL CB661889 [ CCGGAGCACCGTGT TCTCCTGCTCCACGCGCGCGTACTGCCCGGCGATTTCGCTGGC GCGCGCCAGCACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA AGAAGAACACGAAGAAGAAGAACA ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCA ] [-] EMBL CB653184 [ ACGCGCGCGTTGTCCGCCTGCAGCCTCGCCACCTCTTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCACCCGA AGAAGAACACGAAGAAGAAGAACA ACACCAAGAGAGCTCTACTCCTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAACCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCC ] [-] EMBL CB655863 [ GCCTCGCCACCTCGTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA AGAAGAACACGAAGAAGAAGAACA ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACACCCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAAT ] [-] EMBL CB649169 [ CACCTCTTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGA AGAAGAACACGAAGAAGAAGAACA ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTAACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCA] [-] EMBL CA756207 [ GGTGCTGCTGCTTCCGCAGCCGCGACCGCCTCGCCGACTNCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGGTNCGCGGCCACCACCACCCCCGCCGAGTCNCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACA TTTCCACAAACACCTTGTCTAC AAACAGCTGCTTCTTCTGCTGCTACGATTATNTAATCAACCGA AGAAGAACACGAAGAAGAAGAACA ACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGAT CACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGC ] [-] EMBL AU065227 [ cnACTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTNGTCCGCCGCCACAACCACCCCCGCCGAGTCCCCTTCCGACGACCCCGCCGGCGNCAGCGACGACGACGACATTTTCCACACACACCTTGTCTACAAAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGATAGAAGAACNCGAAGAAGAAGAACANCCAACAAGAGAGCTCTACTACTACTAGTACCAATGGCGGATTGACGCGGAGAAGATGTTTCCCCCAGAATTATGAGTTCCACATAAACCCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCA] consensusID : consensus_15949#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 924 fasta sequence [CGCAATTTTACATTGATGATCACAAGAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGG-TCCGCCGCC-ACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACATTTCCACAAACACCTTGTCTACAAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAA-TTATGA-GATCACATAAAACCAGTAGAGG-AAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCAAAGGATGAGGGGAA] [-] EMBL AK071530 [CGCAATTTTACATTGATGATCACAAGAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGTGG TCCGCCGCC ACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCGACGACGACGACATTTCCACAAACACCTTGTCTACAAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAA TTATGA GATCACATAAAACCAGTAGAGG AAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCAAAGGATGAGGGGAA] [-] EMBL CA753462 [ GCCGTTTTTCCCTCC GTGGTTCCGCCGCCGACC CCACCCCCCGCGAGTTCCCGTCCGACGACCCCCCCGGCGACAGCGACGACGACGACATTTCCACAAACACCTCGTGTACAAACAGCTGCTTCTTCTGCTGCTACGATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTACTACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAA TTATGA GATCACATAAAACCAGTAGAGG AAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCAA ] [-] EMBL C93608 [ GAGAGCTCTACTACTACTAGTNACAATGGCGGATTTACNCGGAGAAGATNATTCCCCCAGAATTTATGAGGATCACATAAAACCAGTAGAGGAAANACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTNAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACNAAAATTACGATCTTTCTCACCACCAAGANCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACC ] [-] EMBL OSR3078A [ CGGAGAAGATGATTCCCCCAGAA TTATGA GATCACATAAAACCAGTAGAGG AAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCC AATCCCAACAACAAAAATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCANCGGGAGCTGATCTGCTCNAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGA ] [-] EMBL OSS1250A [ ggtnACATAAAACCAGTAGAGG AAGACAACCGAG AGGAGTGGAGGAAGCAGGANCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATNACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCC ] [-] EMBL AU062467 [ GGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATNACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCGACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGAGAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATC ] consensusID : consensus_15949#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CAGCTTGCCACTTCNTGCACCAGTTTGTCCAGGNGNTGNTGTNNCGGCAGCGGGACGGCTTNGCNGATTCCTGTTGGACAGCNGCNGTTTTTCCTTCGGGTGGTCNGCGGCCACCACCACCCCNGCGGAGTCCCCGTCGGANGACCCCGCNGGGACAGGGANGAGGANGACATTTCCACAAACACNTTGTNTACAAACAGCTGCTTNTTCTGCTGCTACGATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTANTACTANTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGATCACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTTTTTTNTGCTNGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATNTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTNGACACNGATTCGATCAGCGGGAGCNGATNTGTCGAAGAGGACGGAATCGAGNTG] [-] EMBL BE229770 [CAGCTTGCCACTTCNTGCACCAGTTTGTCCAGGNGNTGNTGTNNCGGCAGCGGGACGGCTTNGCNGATTCCTGTTGGACAGCNGCNGTTTTTCCTTCGGGTGGTCNGCGGCCACCACCACCCCNGCGGAGTCCCCGTCGGANGACCCCGCNGGGACAGGGANGAGGANGACATTTCCACAAACACNTTGTNTACAAACAGCTGCTTNTTCTGCTGCTACGATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTANTACTANTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGATCACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGGTGAGTGGCGATCTTCATAAAGCTCAGAGATTTTTTTTNTGCTNGCCTCGGCAAACCATGGCCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAAATCACGATNTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTNGACACNGATTCGATCAGCGGGAGCNGATNTGTCGAAGAGGACGGAATCGAGNTG] consensusID : consensus_15949#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 560 fasta sequence [TTTTTTTAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATCACAA-GAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGG-ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTAC-TGGAGCATGTGC-G-CGGCGGCGGGGCAGGG-GATC-TGCCATGGCCGGAGCAGC-GG-GTCGTCGGGG-GGGCACTCCTCCTGGATGTCCATGGC-GACGCCGCTGAACTCCTCGACGAC-GC-GGAG-CACCTCGTTGACGCTGCGCAGNCTGTCAGCGATCCCTGTTCTGAA] [-] EMBL CF302508 [TTTTTTTAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTGATGATCACAA GAGGAATTGATATAATGACATAGTTTATAAC ] [-] EMBL AU184595 [ TTTTTTTTTTTTTTACATNGATGACCACAA GAGGAATTGATATAATGACATAGTTTATNACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAANGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGNTTAGCTCAGAGCTCACTCTCCCATGGCGCGGGGTTCGTTCAGTAC TGGAGCATGTGC GCCGGCGGCGGGGCAGGG GATC TGCCATGGCCGGANCA ] [+] EMBL BQ529300 [ TTTTTTTTTTTTTTTTCATCACAAGGAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGGCACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGC ] [-] EMBL BI808998 [ TTTTTTTTTTGATCACAA GAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTAC TGGAGCATGTGCTG CGG GGTGGGGCAGGGTGATCTTGCCATGGCCGGAGCAGCTGGTGTCGTCGGGGTGGGCACTCCTCCTGGATGTCCATGGCTGATGCCTGTGAACTCCTCGATGACTGCTGGAG CA CTCGTTGACGCTGCGCAG CTGTCAGCGATCCCTGTTCTGAA] [-] EMBL AU101504 [ TTTTTTGATCACAA GAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTAC TGGAGCATNTGC G CGGCGGCGGGGCAGGG GATC TGCCATGGCCGGAGCAGC GG GTCGTCGGGG GGGCACTCCTCCTGGATGTCCATGGC GACGCCGCTGAACTCCTCGACGAC GC GGA NACCTCGTTGACGCTGAGCA NCTGTCGCCGAgctcgg ] [-] EMBL AU181765 [ TTTTTTGATCACAA GAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTAC TGGAGCATGTGC G CGGCGGCGGGGCAGGG GATC TGCCATGGCCGGAGCAGC GG GTCGTCGGGG GGGCACTCCTCCTGGATGTCCATGGC GACGCCGCTGAACTCCTCGACGAC GC GGAG CACCTCGTTGACGCTGCGCAGCCTGTC ] [-] EMBL CB681848 [ ATAACACAGACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGTCCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTAC TGGAGCATGTGC G CGGCGGCGGGGCAGGG GATC TGCCATGGCCGGAGCAGC GG GTCGTCGGGG GGGCACTCCTCCTGGATGTCCATGGC GACGCCGCTGAACTCCTCGACGAC GG GGAG C ] [-] EMBL BM419987 [ ttttttttTAACACAAACAACATAATTAACCCTTACAAAACACCACATGG ACACAGACAAAAGACCATCACTTATTCAGACACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCTTAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACGTGGAGCATGTGC G CGGCGGCGGGGCAGGG GATC TGCCATGGCCGGAGCAGC GG GTCGTCGGGG GGGCACTCCTCCTGGATGTCCATGGC GACGCCGCTGAACTCCTCGACGAC GC GGAGACACCTCGTTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15949#1 ------------------------------------------------------------ consensus_15949#2 ------------------------------------------------------------ consensus_15949#0 TCCTTTTTTTTTTTGATATAATGACATAGTTTATAACATTACATAACACAAACAACATAA 60 consensus_15949#3 ------------------------------------------------------------ consensus_15949#1 ------------------------------------------------------------ consensus_15949#2 ------------------------------------------------------------ consensus_15949#0 TTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGACACAA 120 consensus_15949#3 ------------------------------------------------------------ consensus_15949#1 ------------------------------------------------------------ consensus_15949#2 ------------------------------------------------------------ consensus_15949#0 AATCATCATCAGAAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGA 180 consensus_15949#3 ------------------------------------------------------------ consensus_15949#1 ------------------------------------------------------------ consensus_15949#2 ------------------------------------------------------------ consensus_15949#0 AATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGCCAACCACAGCT 240 consensus_15949#3 ------------------------------------------------------------ consensus_15949#1 ------------------------------------------------------------ consensus_15949#2 ------------------------------------------------------------ consensus_15949#0 TAGCTCAGAGCTCACTCTCCCATGGCGCGGCGTTCGTTCAGTACTGGAGCATGTGCGCGG 300 consensus_15949#3 ------------------------------------------------------------ consensus_15949#1 ---------------------------------------------CGCAATTTTACATTG 15 consensus_15949#2 ------------------------------------------------------------ consensus_15949#0 CGGCGGGGCAGGGGATCTGCCATGGCCGGAGCAGCGGGTCGTCGGGGGGGCACTCCTCCT 360 consensus_15949#3 ------------------------------------------------------------ consensus_15949#1 ATGATCACAAGAGGAATTGATATAATGACATAGTTTATAACATTACATAACACAAACAAC 75 consensus_15949#2 ------------------------------------------------------------ consensus_15949#0 GGATGTCCATGGCGACGCCGCTGAACTCCTCGACGACGCGGAGCACCTCGTTGACGCTGC 420 consensus_15949#3 ------------------------------------------------------------ consensus_15949#1 ATAATTAACCCTTACAAAACACCACATGGACACAGACAAAAGACCATCACTTATTCAGAC 135 consensus_15949#2 ------------------------------------------------------------ consensus_15949#0 GCAGCCTGTCGCCGAGCTCGGCGGCGCGCGCCCGGAGCACCGTGTTCTCCTGCTCCACGC 480 consensus_15949#3 ------------------------------------------------------------ consensus_15949#1 ACAAAATCATCATCAGAAGAGTAGTAGAAGAAGACCATA---GAGCAGCAGCAGATTAAA 192 consensus_15949#2 ----------------------------------------------------------CA 2 consensus_15949#0 GCGCGTACTGCCCGGCGATTTCGCTGGCGCGCGCCAGCACGCGCGCGTTGTCCGCCTGCA 540 consensus_15949#3 ------------------------------------------------------------ consensus_15949#1 GCCT-TGAAATTCTCAAAGCAGCCAAGAGAAGAAAAAAGATGAAGACTTCTT-GATGCCA 250 consensus_15949#2 GCTT-GCCACTTCNTGCACCAGTTTGTCCAGGNGNTGNTGTNNCGGCAGCGG-GACG--- 57 consensus_15949#0 GCCTCGCCACCTCCTGCACCAGCTCGTCCAGGTGCTGCTGCTTCCGCAGCCGCGACC--- 597 consensus_15949#3 ----------------------TTTTTTTAAAAATTTTTTTTTTTTTTTTTT-------- 30 * consensus_15949#1 ACCACAGCTTAGCTCAGAGCTCACTCTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGT 310 consensus_15949#2 ------GCTTNGCNGA----------TTCCTGTTGGACAGCNGCNGTTTTTCCTTCGGGT 101 consensus_15949#0 ------GCCTCGCCGA---------CTCCCTGTTCGACAGCCGCCGCTTCTCCCTCCGGT 642 consensus_15949#3 -------TTTTTTTTT----------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 73 * * * ** ** * * * consensus_15949#1 GGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCG 370 consensus_15949#2 GGTCNGCGGCCACCACCACCCCNGCGGAGTCCCCGTCGGANGACCCCGCNGG-GACAGGG 160 consensus_15949#0 GGTCCGCCGCCACCACCACCCCCGCCGAGTCCCCGTCCGACGACCCCGCCGGCGACAGCG 702 consensus_15949#3 TTTTTTTTTTTTTTTTTTTTTTTTT----TTTTTTTTTTTTGATCACAAGAGGAATTGAT 129 * * * ** * * * * * consensus_15949#1 ACGACGACGACATTTCCACAAACACCTTGTCTACAAACAGCTGCTTCTTCTGCTGCTACG 430 consensus_15949#2 ANGAGGANGACATTTCCACAAACACNTTGTNTACAAACAGCTGCTTNTTCTGCTGCTACG 220 consensus_15949#0 ACGACGACGACATTTCCACAAACACCTTGTCTACAAACAGCTGCTTCTTCTGCTGCTACG 762 consensus_15949#3 ATAATGACATAGTTTATAACATTACATA--ACACAAACAACATAATTAACCCTTACAA-- 185 * * ** *** * * ** * ******* * * * * * * consensus_15949#1 ATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTACT 490 consensus_15949#2 ATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTANT 280 consensus_15949#0 ATTATTTAATCAACCGAAGAAGAACACGAAGAAGAAGAACAACAACAAGAGAGCTCTACT 822 consensus_15949#3 AACACCACATGGACACAGACAAAAGACCATCACTTATT-CAGACACAAAATCATCATCAG 244 * * ** ** * * ** ** * * * ** **** * * consensus_15949#1 ACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGATC 550 consensus_15949#2 ACTANTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGATC 340 consensus_15949#0 ACTACTAGTAACAATGGCGGATTGACGCGGAGAAGATGATTCCCCCAGAATTATGAGATC 882 consensus_15949#3 AAGAGTAGTAGAAGAAGACCATAGAGCAGCAGCAGATTAAAGCCTTGAAATTCTCAAAGC 304 * * ***** * * ** ** * ** **** * ** **** * * * * consensus_15949#1 ACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGG 610 consensus_15949#2 ACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGG 400 consensus_15949#0 ACATAAAACCAGTAGAGGAAGACAACCGAGAAGGAGTGGAGGAAGCAGGAGCGGCGCAGG 942 consensus_15949#3 A------GCCAAGAGAAGAAAAAAGATGAAGACTTCTTGATGC--CAACCACAGCTTAGC 356 * *** *** *** * * ** * * ** * ** * ** ** consensus_15949#1 TGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGG 670 consensus_15949#2 TGAGTGGCGATCTTCATAAAGCTCAGAGATTTTTTTTNTGCTNGCCTCGGCAAACCATGG 460 consensus_15949#0 TGAGTGGCGATCTTCATAAAGCTCAGAGATTTCTTCTCTGCTCGCCTCGGCAAACCATGG 1002 consensus_15949#3 TCAGAGCTCACTCTCCCATGGCGCGGCG-TTCGTTCAGTACTGGAGCATGTGCGCGGCGG 415 * ** * * ** * ** * * * ** ** * ** * * * ** consensus_15949#1 CCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAA 730 consensus_15949#2 CCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAA 520 consensus_15949#0 CCAGCGAGCTCAACTCCTCCCTCCAGCGCAAACAATTCCTCCCAAATCCCAACAACAAAA 1062 consensus_15949#3 CGGGGCAGGGGATCTGCCATGGCCGGAGCAG-CGGGTCGTCGGGGGGGCACTCCTCCTGG 474 * * ** * ** * ** * *** * ** ** * * * consensus_15949#1 ATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCG 790 consensus_15949#2 ATCACGATNTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTNG 580 consensus_15949#0 ATCACGATCTTTCTCACCACCAAGATCCAACCCAAGAACAGCAACCACAACCAAAATTCG 1122 consensus_15949#3 ATGTCCATGGCGA-CGCCGCTGAACTCC---TCGACGACGCGGAGCACCTCGTTGACGCT 530 ** * ** * ** * * *** * * ** * *** * * consensus_15949#1 ACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGA 850 consensus_15949#2 ACACNGATTCGATCAGCGGGAGCNGATNTG-TCGAAGAGGACGGAATCGAGNTG------ 633 consensus_15949#0 ACACCGATTCGATCAGCGGGAGCTGATCTGCTCGAAGAGGACGGAATCGAGCTGATTGGA 1182 consensus_15949#3 GCGCAGNCT--GTCAGCGATCCCTGTTCTGAA---------------------------- 560 * * * * ****** * * * ** consensus_15949#1 GAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCA 910 consensus_15949#2 ------------------------------------------------------------ consensus_15949#0 GAAGAATTTGGGGGGAGAAATGGATCGAGAGATGGAGATGAATGGCAACCACCCAAATCA 1242 consensus_15949#3 ------------------------------------------------------------ consensus_15949#1 AAGGATGAGGGGAA 924 consensus_15949#2 -------------- consensus_15949#0 -------------- consensus_15949#3 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||