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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15981#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 924 fasta sequence
[TTTTTTTTTTAT-CAATC-TCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAGAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAGAATCTCTGGATCTCCAGATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG-C-CCA-GGAAGTGC-CGCGATGGACGAT-GGCACCAGGTCCAGAAGCAAGATCGACG-CATCAAAAACC-AAAAT-G-TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGATGCCAGATTTTCTACTCCTTCAGCCATG]
[+] EMBL CF335993 [TTTTTTTTTTAT CAATC TCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAGAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAGAATCTCTGGATCTCCAGATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGC CGCGATGGACGATGGGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAAT G TTT ]
[+] EMBL CF337927 [ TTTTTTTAT CAATC TCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAGAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAGAATCTCTGGATCTCCAGATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAATGG TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATA ]
[+] EMBL CF338124 [ TTTTTTTAT CAATC TCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAGAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAGAATCTCTGGATCTCCAGATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCAC ]
[+] EMBL CF279990 [ TTTTTTTAT CAATC TCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAGAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAGAATCTCTGGATCTCCAGATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAAT G TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGA ]
[-] EMBL CA754544 [ TTNTTTATCCAATC TCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAGAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCNCGATCAAAACCAGGAGATCAAGANCGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCANGGATGTGGCTCATAGAAAAGAATTCAGAATCTCTGGATCTCCAGATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAAT G TTTGCAAGTCGTTTTTGGGAAT ]
[+] EMBL CB641566 [ T CAATCAACTGATTAAGATTTATAAACAACCTCTCTGTTACATTCAGAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACACTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAGAATCTCTGGATCTCCAGATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAAT G TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGA ]
[-] EMBL CB641565 [ TAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAGAATCTCTGGATCTCCAGATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAAT G TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGA ]
[-] EMBL CF332488 [ GGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAGAATCCCTGGATCTCCAGATATTG TTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAAT G TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGATGCC ]
[-] EMBL CF335992 [ CAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAAT G TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGA ]
[-] EMBL CF336789 [ TGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAAT GNTTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCAAGGAGGAGGGAGGCGGATCAGGATGCCAGATTTTCTACTCCTTCAGCCATG]
[-] EMBL CF338008 [ GATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGCNCGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAAT G TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGATGC ]
[-] EMBL CF334470 [ ATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACGGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG CNCCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAATGG TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGATGCCAGATTTTCTACTC ]
[-] EMBL CF334853 [ ATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG CNCCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACCAAAAAT G TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGATGCC ]
[-] EMBL CF338123 [ ATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCANNGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACGCCATCAAAAACC AAAATGG TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGA ]
[-] EMBL CF337926 [ AGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAAT GNTTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGA ]
[-] EMBL CF332868 [ AGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACG C CCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCGAAAACC AAAAT G TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTCCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGA ]
[-] EMBL CF336617 [ GGTGGGTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACGCC CCA GGAAGTGC CGCGATGGACGAT GGCACCAGGTCCAGAAGCAAGATCGACG CATCAAAAACC AAAAT G TTTGCAAGTCGTTTTTGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGATGC ]
[-] EMBL CF279991 [ GGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCTTCATCTGCAATAAAAGCATATGGAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGAT ]
[-] EMBL CF333568 [ TTCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGATGGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGATGCC ]
consensusID : consensus_15981#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 840 fasta sequence
[CGGCATGACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----TGAACCAGAAGTA-TCAATCTCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAAAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAAAAAAGAATTCAAAATCTCTGGATCTCCAAATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGGTGGGNTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACGCCCAGGAAGTGCCGCGATGGACGATGGCACCAGGTCCAGAAGCAAGATCGACGCATCAAAAACCAAAATGGTTTGCAAGTCGTTTTTGGGGAATGAATGCTCTGCTGCTATGGAGACT-TTAA-CAGGGAAACAAAAGGGAATTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGA]
[+] EMBL CF336788 [CGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCATGAACCAGAAGTA TCAATCTCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAAAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAAAAAAGAATTCAAAATCTCTGGATCTCCAAATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGC ]
[+] EMBL CF332487 [ ttttTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCATGAACCAAAAGTA TCAATCTCTGATTAAAATTTATAAACAAAATCACTGTTACATTCAAAATCGGGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGGGCTTTTTTTCCCGATCAAAACCCGGAGATCAAGAACGAAACTTAACATTAAAGCGGGGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAAATCTTGGATGGGGCTCATAAAAAAAAATTCAAAATCCCTGGATCTCCAAATATTGTTTCTCCAAACTGGCCCCAAAGGTCCAAAGGCATGGATGACCGGGCATGCAAACAGCGCGTGACAGGAAACAATCGAGGATGCTTCATGATAAATCAACGTTGTCCCCTAGGA ]
[+] EMBL CF332775 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TGAACCAAAAGTA TCAATCTCTGATTAAAATTTATAAACAAAATCACTGTTACATTCAAAATCGGGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTTTTTTCCCGATCAAAACCCGGAAATCAAGAACCAAACATAACAATTAAGCGGGGGGAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGGAAATCATGGATGGGGCTCATAAAAAAAAATTCAAAATCTCTGGATCTCCAAATATTGTTTCTCCAAACTGGCACCAAAGGTCCAAAGGCCTGGATGACCGGGCATGCCAACAGCGC ]
[+] EMBL CF332867 [ TTTTTTTTTTTTTTTTAACCA TGAACCAGAAGTA TCAATCTCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAAAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAAATCATGGATGTGGCTCATAGAAAAGAATTCAAAATCTCTGGATCTCCAAATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGC ]
[+] EMBL CF336618 [ TTTTTTTTTTTTTTTTTTT TGAACCAGAAGTA TCAATCTCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAAAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAAAAAAGAATTCAAAATCTCTGGATCTCCAGATATTGTTTCTCCAAACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACAATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGC ]
[+] EMBL CF338009 [ TTTTTTTTTTTTTTTTTTT TGAACCAGAAGTA TCAATCTCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAAAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAAAATCTCTGGATCTCCAAATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCAC ]
[+] EMBL CF333567 [ TTTTTT TGAACCAGAAGTATTCAATCTCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAGAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAGAATCTCTGGATCTCCAGATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGGTGGGNTCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACGCCCAGGAAGTGCCGCGATGGACGATGGCACCAGGTCCAGAAGCAAGATCGACGCATCAAAAACCAAAATGGTTTGCAAGTCGTTTTTGGGGAATGAATGCTCTGCTGCTATGGAGACT TTAA CAGGGAAACAAAAGGGAA ]
[-] EMBL AK120941 [ GATTAAGATTTATAAACAAAATCACTGTTACATTCAGAATCGTGTAAAATAAACTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGATCAAAACCTGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGACCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAGAATCTCTGGATCTCCAGATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGACCGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGTTGTCACCTAGGAATCAACGACACAGCACAGCTTGATTAT GGTGGG TCGCCGCCGTCGTCGCAGACCATATGCAGCCAGGTCGATGGATCGACGCCCAGGAAGTGCCGCGATGGACGATGGCACCAGGTCCAGAAGCAAGATCGACGCATCAAAAACCAAAAT GTTTGCAAGTCGTTTTT GGGAATGAATGCTCTGCTGCTATGGAGACTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGTCTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGTCGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGGCGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15981#0 -------------------------------------TTTTTTTTT----------TATC 13
consensus_15981#1 CGGCATGACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACCAGAAGTATC 60
********* ****
consensus_15981#0 AATCTCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAGAATCGTGTAAAATAAA 73
consensus_15981#1 AATCTCTGATTAAGATTTATAAACAAAATCACTGTTACATTCAAAATCGTGTAAAATAAA 120
******************************************* ****************
consensus_15981#0 CTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGA 133
consensus_15981#1 CTTAATGCTCTAACAGGATACTGAATTCTGAATGAACAGTATCAGTGCTTCTTTTCCCGA 180
************************************************************
consensus_15981#0 TCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGA 193
consensus_15981#1 TCAAAACCAGGAGATCAAGAACGAAACATAACAATAAAGCGGAGGTAGGCCTAATGCGGA 240
************************************************************
consensus_15981#0 CCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAGAAAAGAATTCAGAATC 253
consensus_15981#1 CCATGGATTAATTTGTTTAGGTAGATCATGGATGTGGCTCATAAAAAAGAATTCAAAATC 300
******************************************* *********** ****
consensus_15981#0 TCTGGATCTCCAGATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGAC 313
consensus_15981#1 TCTGGATCTCCAAATATTGTTTCTCCAGACTGGCACCAAAGGTCCAAAGGCATGGATGAC 360
************ ***********************************************
consensus_15981#0 CGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGT 373
consensus_15981#1 CGGGCATGCGAACAGCGCGTGACAGGAGACGATCGAGGATGCTTCATGATAGATCAACGT 420
************************************************************
consensus_15981#0 TGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGT--GGGTCGCCGCCGTCGT 431
consensus_15981#1 TGTCACCTAGGAATCAACGACACAGCACAGCTTGATTATGGGTGGGNTCGCCGCCGTCGT 480
***************************************** ** *************
consensus_15981#0 CGCAGACCATATGCAGCCAGGTCGATGGATCGACGCCCAGGAAGTGCCGCGATGGACGAT 491
consensus_15981#1 CGCAGACCATATGCAGCCAGGTCGATGGATCGACGCCCAGGAAGTGCCGCGATGGACGAT 540
************************************************************
consensus_15981#0 GGCACCAGGTCCAGAAGCAAGATCGACGCATCAAAAACCAAAATG-TTTGCAAGTCGTTT 550
consensus_15981#1 GGCACCAGGTCCAGAAGCAAGATCGACGCATCAAAAACCAAAATGGTTTGCAAGTCGTTT 600
********************************************* **************
consensus_15981#0 TTGGG-AATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAAACTCT 609
consensus_15981#1 TTGGGGAATGAATGCTCTGCTGCTATGGAGACTTTAACAGGGAAACAAAAGGGAA----- 655
***** *************************************************
consensus_15981#0 TCATCTGCAATAAAAGCATATAAAATTGGAAGGATTAAACCGTCGCCGGGTAGATCCGAT 669
consensus_15981#1 ------------------------------------------------------------
consensus_15981#0 GGATCAACACCGTCACCTGGTAATCACGGTAGCAATGGCCTGTTGATTGGTCGACGACGT 729
consensus_15981#1 ------------------------------------------TTGATTGGTCGACGACGT 673
******************
consensus_15981#0 CTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGT 789
consensus_15981#1 CTCAGAACCTGCCGATGGATTCACTGAGAAGAAAACGCCGCCAGGGCCAGGGGACGCCGT 733
************************************************************
consensus_15981#0 CGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGG 849
consensus_15981#1 CGCCTAGGTGGCCCATGGGCAACGTTGTGAGCTGCTGTCGCTTCATTCTCGATGATGGGG 793
************************************************************
consensus_15981#0 CGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGATGCCAGATTTTCT 909
consensus_15981#1 CGCCGGCGCTGTCGCCGTCCGCCGAGGAGGAGGGAGGCGGATCAGGA------------- 840
***********************************************
consensus_15981#0 ACTCCTTCAGCCATG 924
consensus_15981#1 ---------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||