These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15989#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1434 fasta sequence [TCATCCATCCATCAAGTTGGTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCGTCCGCCATGTTCGTGGCCGTCTCCGGCCA-G-AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGGA-GAAGTTCGGGC-TGCCGTTGC-TGCCGCCGTC-GAAGAGGGGCGGCTCCGAC-TTCCGGCGAGGCGCGAAC-ATGGCGATC-ATCGGCGCCACCACCATGGAC-TCCGGCTTCTTCCAGTCGCTCGGCATCGGCGACAAGATCTGGAACAATGGCCCCCTCAACACCCAGATCCAGTGGTTCCAGCAGCTCATGCCCTCCATCTGCGGCTCATCTTGCAAGACGTACCTGTCCAAGTCGCTGTTCGTGCTCGGCGAGTTCGGGGGCAACGACTACAACGCGCAGCTGTTCGGCGGGTACACGCCGGAGCAGGCGGCGGGGCAGAGCGGCACCATCGTGGACGGGATCGGGAAGGGGGTGGAGCAGCTGATCGGGCTGGGCGCCATGTACGTCGTCGTCCCCGGCGTGCTCCCCGTCGGCTGCTTCCCCATCTACCTCACGCTGTACGGCACCTCCAACGCCGGCGACTACGACCAG-TACGGCTGCCTC-ACCCGC-TTCAACA-CCCTC-TCCTCCCG-CCATAACTCCCTCCT-CCAGGCCAAGGTCTCCTCCCTCCAGAGCAAGTACCCCTGGGCTCG-CATCATGTACGCCGACTTCTACT-CCCACGTCTACGACATGGTCAAATCCCCCTCCAACTACGGGTTTAG-CACGAATTTGAGGGCGTGCTGCGGGGCGGGAGGAGGGAAGTACAACTACCA-GAACGGCG--CGAGGTGCGGCATG-TCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTCGTTGAGCTGGGACGG-CATCCATCT-CA-CGGAGGCGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGCCCTAGATCATCGCCGGC-GGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTG-CTGATTTGATTTGTTTAGCAGA-AGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAA-GAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAATTAAATCTTAGTAAAAAAAAAAATGGTTTGGTTGG] [+] EMBL AK121780 [TCATCCATCCATCAAGTTGGTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCGTCCGCCATGTTCGTGGCCGTCTCCGGCCA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGGA GAAGTTCGGGC TGCCGTTGC TGCCGCCGTC GAAGAGGGGCGGCTCCGAC TTCCGGCGAGGCGCGAAC ATGGCGATC ATCGGCGCCACCACCATGGAC TCCGGCTTCTTCCAGTCGCTCGGCATCGGCGACAAGATCTGGAACAATGGCCCCCTCAACACCCAGATCCAGTGGTTCCAGCAGCTCATGCCCTCCATCTGCGGCTCATCTTGCAAGACGTACCTGTCCAAGTCGCTGTTCGTGCTCGGCGAGTTCGGGGGCAACGACTACAACGCGCAGCTGTTCGGCGGGTACACGCCGGAGCAGGCGGCGGGGCAGAGCGGCACCATCGTGGACGGGATCGGGAAGGGGGTGGAGCAGCTGATCGGGCTGGGCGCCATGTACGTCGTCGTCCCCGGCGTGCTCCCCGTCGGCTGCTTCCCCATCTACCTCACGCTGTACGGCACCTCCAACGCCGGCGACTACGACCAG TACGGCTGCCTC ACCCGC TTCAACA CCCTC TCCTCCCG CCATAACTCCCTCCT CCAGGCCAAGGTCTCCTCCCTCCAGAGCAAGTACCCCTGGGCTCG CATCATGTACGCCGACTTCTACT CCCACGTCTACGACATGGTCAAATCCCCCTCCAACTACGGGTTTAG CACGAATTTGAGGGCGTGCTGCGGGGCGGGAGGAGGGAAGTACAACTACCA GAACGGCG CGAGGTGCGGCATG TCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTCGTTGAGCTGGGACGG CATCCATCT CA CGGAGGCGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGCCCTAGATCATCGCCGGC GGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTG CTGATTTGATTTGTTTAGCAGA AGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAA GAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAATTAAATCTTAGT ] [+] EMBL AK104883 [ CATCCATCCATCAAGTTGGTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCGTCCGCCATGTTCGTGGCCGTCTCCGGCCA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGGA GAAGTTCGGGC TGCCGTTGC TGCCGCCGTC GAAGAGGGGCGGCTCCGAC TTCCGGCGAGGCGCGAAC ATGGCGATC ATCGGCGCCACCACCATGGAC TCCGGCTTCTTCCAGTCGCTCGGCATCGGCGACAAGATCTGGAACAATGGCCCCCTCAACACCCAGATCCAGTGGTTCCAGCAGCTCATGCCCTCCATCTGCGGCTCATCTTGCAAGACGTACCTGTCCAAGTCGCTGTTCGTGCTCGGCGAGTTCGGGGGCAACGACTACAACGCGCAGCTGTTCGGCGGGTACACGCCGGAGCAGGCGGCGGGGCAGAGCGGCACCATCGTGGACGGGATCGGGAAGGGGGTGGAGCAGCTGATCGGGCTGGGCGCCATGTACGTCGTCGTCCCCGGCGTGCTCCCCGTCGGCTGCTTCCCCATCTACCTCACGCTGTACGGCACCTCCAACGCCGGCGACTACGACCAG TACGGCTGCCTC ACCCGC TTCAACA CCCTC TCCTCCCG CCATAACTCCCTCCT CCAGGCCAAGGTCTCCTCCCTCCAGAGCAAGTACCCCTGGGCTCG CATCATGTACGCCGACTTCTACT CCCACGTCTACGACATGGTCAAATCCCCCTCCAACTACGGGTTTAG CACGAATTTGAGGGCGTGCTGCGGGGCGGGAGGAGGGAAGTACAACTACCA GAACGGCG CGAGGTGCGGCATG TCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTCGTTGAGCTGGGACGG CATCCATCT CA CGGAGGCGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGCCCTAGATCATCGCCGGC GGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTG CTGATTTGATTTGTTTAGCAGA AGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAA GAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAATTAAATCTTAGT ] [+] EMBL AK061497 [ TCCATCCATCAAGTTGGTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCGTCCGCCATGTTCGTGGCCGTCTCCGGCCA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGGA GAAGTTCGGGC TGCCGTTGC TGCCGCCGTC GAAGAGGGGCGGCTCCGAC TTCCGGCGAGGCGCGAAC ATGGCGATC ATCGGCGCCACCACCATGGAC TCCGGCTTCTTCCAGTCGCTCGGCATCGGCGACAAGATCTGGAACAATGGCCCCCTCAACACCCAGATCCAGTGGTTCCAGCAGCTCATGCCCTCCATCTGCGGCTCATCTTGCAAGACGTACCTGTCCAAGTCGCTGTTCGTGCTCGGCGAGTTCGGGGGCAACGACTACAACGCGCAGCTGTTCGGCGGGTACACGCCGGAGCAGGCGGCGGGGCAGAGCGGCACCATCGTGGACGGGATCGGGAAGGGGGTGGAGCAGCTGATCGGGCTGGGCGCCATGTACGTCGTCGTCCCCGGCGTGCTCCCCGTCGGCTGCTTCCCCATCTACCTCACGCTGTACGGCACCTCCAACGCCGGCGACTACGACCAG TACGGCTGCCTC ACCCGC TTCAACA CCCTC TCCTCCCG CCATAACTCCCTCCT CCAGGCCAAGGTCTCCTCCCTCCAGAGCAAGTACCCCTGGGCTCG CATCATGTACGCCGACTTCTACT CCCACGTCTACGACATGGTCAAATCCCCCTCCAACTACGGGTTTAG CACGAATTTGAGGGCGTGCTGCGGGGCGGGAGGAGGGAAGTACTACTACCA GAACGGCG CGAGGTGCGGCATG TCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTCGTTGAGCTGGGACGG CATCCATCT CA CGGAGGCGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGCCCTAGATCATCGCCGGC GGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTG CTGATTTGATTTGTTTAGCAGA AGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAA GAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAATTAAATCTTAGTAATTTGTTGCATGGTTTGGTTGG] [+] EMBL AK104394 [ TCCATCCATCAAGTTGGTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCGTCCGCCATGTTCGTGGCCGTCTCCGGCCA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGGA GAAGTTCGGGC TGCCGTTGC TGCCGCCGTC GAAGAGGGGCGGCTCCGAC TTCCGGCGAGGCGCGAAC ATGGCGATC ATCGGCGCCACCACCATGGAC TCCGGCTTCTTCCAGTCGCTCGGCATCGGCGACAAGATCTGGAACAATGGCCCCCTCAACACCCAGATCCAGTGGTTCCAGCAGCTCATGCCCTCCATCTGCGGCTCATCTTGCAAGACGTACCTGTCCAAGTCGCTGTTCGTGCTCGGCGAGTTCGGGGGCAACGACTACAACGCGCAGCTGTTCGGCGGGTACACGCCGGAGCAGGCGGCGGGGCAGAGCGGCACCATCGTGGACGGGATCGGGAAGGGGGTGGAGCAGCTGATCGGGCTGGGCGCCATGTACGTCGTCGTCCCCGGCGTGCTCCCCGTCGGCTGCTTCCCCATCTACCTCACGCTGTACGGCACCTCCAACGCCGGCGACTACGACCAG TACGGCTGCCTC ACCCGC TTCAACA CCCTC TCCTCCCG CCATAACTCCCTCCT CCAGGCCAAGGTCTCCTCCCTCCAGAGCAAGTACCCCTGGGCTCG CATCATGTACGCCGACTTCTACT CCCACGTCTACGACATGGTCAAATCCCCCTCCAACTACGGGTTTAG CACGAATTTGAGGGCGTGCTGCGGGGCGGGAGGAGGGAAGTACAACTACCA GAACGGCG CGAGGTGCGGCATG TCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTCGTTGAGCTGGGACGG CATCCATCT CA CGGAGGCGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGCCCTAGATCATCGCCGGC GGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTG CTGATTTGATTTGTTTAGCAGA AGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAA GAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAATT ] [+] EMBL OSS11789A [ CATCCATCAAGTTGGTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCGTCCGCCATGTTCGTGGCCGTCTCCGGCCA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGGA GAAGTTCGGGC TGCCGTTGCTTGCCGCCGTT GAAGAGGGGCGG ] [+] EMBL AU032556 [ ggnATCAAGTTGGTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCGTCCGCCATGTTCGTGGCCGTCTCCGGCCA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGCTGCTCCG ] [+] EMBL OSS12788A [ AGTTGGTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTNGCGTTCGCGGTTGCGTCCGCNATGTTCGTGGCCGTCTCCGGCCA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTNACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGC ] [+] EMBL OSS12553A [ AGTTGGTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCGTCCGCCATGTTCGTGGCCGTCTCCGG CA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGCTGCTCCGACGGNCGCNTCGTCGTCGACTTCCTCGCGGAGGAAGTTCGGGCTTGCCGTTGC TGCCGCCGTCGGAAGAGGGGCGGCTCCGAC TTCCGGCGAGNCGCGAACAATGGGGATCAATGGGNGGCAACAACATGGACTTCCGG ] [+] EMBL CA755618 [ GTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCGTCCGCCATGTTCGTGGCCGTCTCCGGCCA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGGA GAAGTTCGGGC TGCCGTTGC TGCCGCCGTC GAAGAGGGGCGGCTCCGAC TTCCGGCGAGGCGCGAAC ATGGCGATC ATCGGCGCCACCACCATGGAC TCCGGCTTCTTCCAGTCGCTCGGCATCGGCGACNAGATCTGGAACAATGGCCCCCTCAACACCCAGATCCAGTGGTTCCAGCAGCTCATGCCCTCCATCTGCGGCTCATCTTGCAAGACGTACCTGTCCAAGTCGCTGTTCGTGCTCGGCGAGTTCGGNGGCAACGACTACCACGCGCAGCTGTTCGGCGGGTACACGCCGGAGCAGGCGGCGGGGCAGAGCGGCACCATCGTGGAC GGATC ] [+] EMBL OSS14296A [ GTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTG GTCCNTCATGTTCGTGGCCGTCTCCG CA GNAAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCNCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCG CACCTGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGGA GAAGTTCGGGC TGCCGTTGC TGCCGCCGTC GAAGAGGGGCGG TCCNACTTTCCNGCGAGGCGCGAACAATGGCGATC ATCGGCG CANCACCATGGAC TTCGGCTTCTTCCAGTCG TTNGCATC GCGACAAGATCTNGAACAATGG CCCCT AAAAACCAGATCCAG ] [+] EMBL OSS14610A [ CATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTNNGGCGTTCGCGGTTGCNTCCGCCATGTTCGTGGCCGTCTCCGGNCA G AANTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGNCGGCCTGACGCTCACCCAGCCTCCCTACGGCG ] [+] EMBL OSS4550A [ CGAGCTGAATCTAAACCTTTGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCNTCCGCCATGTTCGTGGCCGTNTCCGG CA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGGAGGAAGTTCGGGC TNCCGTTGC TGCCGCCGTC GAAGAGGGGCGGCTCCGACTTTCCGGCGAGGCGCGAA ] [+] EMBL OSS2971A [ cntnCGANCTGAATCTAAACCTTTNCAACAATGGCGGCGCATNTTGTTGTGGCGTTCGCGGTTGCTTCCGCCATGTTCGTGGCCGTCTCCGGCCA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCNTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGTTGCTCCGACGGCCG CTCGTCGTCGACTTCCTCGCGGA GAAGTTCGGGC TGCCGTTGC TTCCGCCGTC GA ] [+] EMBL OSS1321A [ TGCAACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCGTCCGCCATGTTCGTGGCCGTCTCCGG CA G AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACANCGGCAACCTCTGCGTGAACGGCCCCCCCGNCGGCCTGACGNTCANCCAGCCTNCCTANGGCGAGANCT ] [+] EMBL OSS13965A [ AACAATGGCGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCNTCCGCCATGTTCGTGGCCGTCTCCGGCCATG AAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCGTGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCGGCCGCGCCACCTGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCC ] [+] EMBL AU075908 [ CCAGTTACGGCTGCNTCAACCCGCTTTCAANACCCCTCTTCCTCCCGNCCATAACTCCCTCCTCCCAGGCCAAAGTCTCCTCCCTCCAGAGCAA TACCCCTGGGCTCGCCATCATGTACGCCGACTTCTACTCCCCAC TCTACGACATGGTCAAATCCCCCTCCAACTACGGGTTTAG CACGAATTTGAGGGCGTGCTGCGGGNCGGGAGGAGGGAAGTACAACTACCA GAACGGCG CGAGGTGCGGCATG TCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTCGTTGAGCTGGGACGG CATCCATCT CA CGGAGGCGNCGTACAAGCANATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGCCCTAGATCATCGCCGGC GGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTG CTGATTTGATTTGTTTAGCAGA AGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAA GAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAATTAAATCTTAGTAAAAAAAAAA ] [+] EMBL BI798894 [ GACTTCTACT CCCACGTCTACGACATGGTCAAATCCCCCTCCAACTAC GGTTTAG CACGAATTTGAGGGCGTGCTGCGGGCCGGGAGGAGGGAAGTACAACTACCA GAACGGCG CGAGGTGCGGCATG TCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTCGTTGAGCTGGGACGG CATCCATCT CACCGGAGGCGGCGTACAAGCAGATCGCCGACGGGTGGGTC ACGGGCCCTACTGCCACCCGCCGATCATGTCCTAGATCATCGCCGGC GGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTG CTGATTTGATTTGTTTAGCAGA AGAAGAGAAGAAAAATGGATAGC AGAGGAAGAA GAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGC ATTTAATTATGTGTTGCCATTAATTAATTAAATCTTAGTAAAAAAAAAA ] [+] EMBL AU032557 [ CTCCAACTACGGGTTTAGNCACGAATTTGAGGNCTTGCTGCGGGGCGGGAGGAGGGAAGTACAACTACCA GAACGGCG CGAGGTGCGGCATGTTCGGGAGCCTACGCGTGCTCCAACCCGTCGTCNTCGTTGAGCTGGGACGGTCATCCATCTCCA CGGAGGCGGCGTACAAGCAGATCNCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGCCCTAGATCATC CCGGC NGCNGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTG CTGATTTGATTTGTTTAGCAGA AGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAA GAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAATTAAATCTTAGTAATTAAAAAA ] [+] EMBL BI798443 [ TACCATGATCGGCGTCCGAGTTCCGCCAT TCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTC TTGAGCT GGACGG CATCCATCT CA CGGA GCGGCGTACAA CAGATCGCCGACGGGTGGTTCAACGGGCCCTACTGCCACCCGCCGATCATGTCCTAGATCATC CCGGC GGCGGCGACGGCGGCCGGAGGAT GCCGGCTAGCTGCTG CTGATTTGATTTGTTTAGCAGA AGAAGAGAAGAAAAATGGATAGCCAGAGGAAGAACGAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCCATTAATTAATTAAATCTTAGTAAAAAAAAAA ] [+] EMBL BI806660 [ nctnGCCACCCTCCGATCATGCCCTAGATCATCCACGGCAGGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTGTCTGATTTGATTTGTTTAGCAGAGAGAAGAGAAGAAAAATGGATAGCAAGAGGAAGCA GAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTC TTGT GGTGGTTAATTTGTTTTTGTTTTA GTAATGCACATTTGTGTAGTATGTATGAGATTGGGA GCCATTTAATTATGTGTTNCAATTAATTAACNAAATCTTAGTAAAAAA ] consensusID : consensus_15989#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 629 fasta sequence [GAGCTATTCTGCTGGAACGGTAAAGCGATAGTAGCGGATTTTCTTGGATGGTTTGAAGTTTATGAATGATTAATTCGACGGTTTTTTGTGATGAATTTGCGCAGGGTTTAGCACGAATTTGAGGGCGTGCTGCGGGGCGGGAGGAGGGAAGTACAACTACCAGAACGGCCGCG-AGGTGCGGCATGTCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTCG-TTGAGCTGGGACGGCATCCATCTCACGGAGGCGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGCCCTAGATCATCGCCGGCGGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTGCTGATTTGATTTGTTTAGCAGAAGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAAGAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAATTAAAAAATAGTAATTTGTTGCNAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB639179 [GAGCTATTCTGCTGGAACGGTAAAGCGATAGTAGCGGATTTTCTTGGATGGTTTGAAGTTTATGAATGATTAATTCGACGGTTTTTTGTGATGAATTTGCGCAGGGTTTAGCACGAATTTGAGGGCGTGCTGCGGGGCGGGAGGAGGGAAGTACAACTACCAGAACGG CGCG AGGTGCGGCATGTCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTCG TTGAGCTGGGACGGCATCCATCTCACGGAGGCGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGCCCTAGATCATCGCCGGCGGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTGCTGATTTGATTTGTTTAGCAGAAGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAAGAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAATTA ] [+] EMBL AU033098 [ AGTACAACTACCAGAACGGCCGCGAAGGTGCGGCATNTCGGGAGCCTACGCGTGCTCCAACCCGTCGTCTTCGTTTGAGCTGGGACGGCATCCATCTCACGGAGGCGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGCCCTAGATCATCGCCGGCGGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTGCTGATTTGATTTGTTTAGCAGAAGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAAGAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAAAAAAAAAA ] [+] EMBL CB682116 [ acgccttt AGGTGCGGCATGTCGGGAGCCTACGCGTGCTCCAACCCGTCGTCGTCG TTGAGCTGGGACGGCATCCATCTCACGGAGGCGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCATGCCCTAGATCATCGCCGGCGGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTGCTGATTTGATTTGTTTAGCAGAAGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAAGAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATG ] [+] EMBL AU197997 [ GGCATCCATCTCACGGAGGCGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCNCCCGCCGATCATGCCCTAGATCATCGCCGGCGGCGGCGACGGCGGCCGGAGGATGGCCGGCTAGCTGCTGCTGATTTGATTTGTTTAGCAGAAGAAGAGAAGAAAAATGGATAGCAAGAGGAAGAAGAAGACATCTTGCGATCGACTGGGAAATGAATAANATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCNCATTTGTGTAGTATGTATGAGATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAATTAAATNTTAGTAATTTGTTGCNAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU197970 [ GCGACGGCGGCCGGAGGATGGCCGGCTAACTGCTGCTGATTTGATTTGTTTAGCNGAAGAAGAGAAGAAAAATGGATAGCNANAGGAANAAGAAGACNTNTTGCGATCGACTGGGAAATGAATAANATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCNCATTTGTGTAGTATGTATNANATTGGGAGGCAATTTAATTATGTGTTGCAATTAATTAATTAAATNTTAGTAATTTGTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU075891 [ ATTTGATTTGTTTANCAGAAGANGAGANNNAAAATGGATAGCAAGAGGAAGAAGAAGACANCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGANATTGGGAGGNNATTTAATTATGTGTTGNNATTNATTNNTTAAAAAA ] consensusID : consensus_15989#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [GTCCNAGCNTTGNCGGGGTTTTGGGCTTNGTANTTTTTTGATGGGTGTCTTTTCTTTCGTGGGCGTGGGAGGGTGGGGGGTATGTTTCCTCCTAGTCCCNGTGNCGGGCGCCGAGGGTTGCGGGCCACTGTCGGGATGCCTACGCGTGCTCCNGTACCNGTCTTCGTCGTTGTAGTCTGGGACGGCATCCACTCTCTCGGAGGCGGCGTNCAAGCAGATCNCCGNCGGTGGGTCACGGCCCTACTGCCACCCGCCGATCATGCCCTATGATCATCCCCGGCGGCGGCGAGCGCCGTCCGGAGGATGCCGGCTATTCTTCTGCTGATTTGATTTGTTTAGCCAGAAGAAGAGAAGAAAAATGGATACCCNAGAGGAAGAAGAAGACATCTTNCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGCATTTAATTATGTGTNGCCATTAAAAAAAAAA] [+] EMBL BI807308 [GTCCNAGCNTTGNCGGGGTTTTGGGCTTNGTANTTTTTTGATGGGTGTCTTTTCTTTCGTGGGCGTGGGAGGGTGGGGGGTATGTTTCCTCCTAGTCCCNGTGNCGGGCGCCGAGGGTTGCGGGCCACTGTCGGGATGCCTACGCGTGCTCCNGTACCNGTCTTCGTCGTTGTAGTCTGGGACGGCATCCACTCTCTCGGAGGCGGCGTNCAAGCAGATCNCCGNCGGTGGGTCACGGCCCTACTGCCACCCGCCGATCATGCCCTATGATCATCCCCGGCGGCGGCGAGCGCCGTCCGGAGGATGCCGGCTATTCTTCTGCTGATTTGATTTGTTTAGCCAGAAGAAGAGAAGAAAAATGGATACCCNAGAGGAAGAAGAAGACATCTTNCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGTGGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGGGAGCATTTAATTATGTGTNGCCATTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15989#0 TCATCCATCCATCAAGTTGGTCATCGAGCTCGAGCTGAATCTAAACCTTTGCAACAATGG 60 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 CGGCGCGTGTTGTTGTGGCGTTCGCGGTTGCGTCCGCCATGTTCGTGGCCGTCTCCGGCC 120 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 AGAAGTTCAACGCCATCTTCAGCTTCGGCGACTCCATGTCCGACACCGGCAACCTCTGCG 180 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 TGAACGGCCCCCCCGCCGGCCTGACGCTCACCCAGCCTCCCTACGGCGAGACCTTCTTCG 240 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 GCCGCGCCACCTGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGGAGAAGT 300 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 TCGGGCTGCCGTTGCTGCCGCCGTCGAAGAGGGGCGGCTCCGACTTCCGGCGAGGCGCGA 360 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 ACATGGCGATCATCGGCGCCACCACCATGGACTCCGGCTTCTTCCAGTCGCTCGGCATCG 420 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 GCGACAAGATCTGGAACAATGGCCCCCTCAACACCCAGATCCAGTGGTTCCAGCAGCTCA 480 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 TGCCCTCCATCTGCGGCTCATCTTGCAAGACGTACCTGTCCAAGTCGCTGTTCGTGCTCG 540 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 GCGAGTTCGGGGGCAACGACTACAACGCGCAGCTGTTCGGCGGGTACACGCCGGAGCAGG 600 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 CGGCGGGGCAGAGCGGCACCATCGTGGACGGGATCGGGAAGGGGGTGGAGCAGCTGATCG 660 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 GGCTGGGCGCCATGTACGTCGTCGTCCCCGGCGTGCTCCCCGTCGGCTGCTTCCCCATCT 720 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 ACCTCACGCTGTACGGCACCTCCAACGCCGGCGACTACGACCAGTACGGCTGCCTCACCC 780 consensus_15989#1 ------------------------------------------------------------ consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 GCTTCAACACCCTCTCCTCCCGCCATAACTCCCTCCTCCAGGCCAAGGTCTCCTCCCTCC 840 consensus_15989#1 --------------------------GAGCTATTCTGCTGGAACGGTAAAGCGATAGT-- 32 consensus_15989#2 ------------------------------------------------------------ consensus_15989#0 AGAGCAAGTACCCCTGGGCTCGCATCATGTACGCCGACTTCT--ACTCCCACGTCTACGA 898 consensus_15989#1 --AGCGGATTTTCTTGGA-TGGTTTGAAGTTTATGAATGATT--AATTCGACGGTTTTT- 86 consensus_15989#2 ---------------------GTCCNAGCNTTGNCGGGGTTTTGGGCTTNGTANTTTTTT 39 * * * * consensus_15989#0 CATGGTCAAATCCCCCTCCAACTACGGGTTTAGCACGAATTTGAGGGCGTGCTGCGGGGC 958 consensus_15989#1 TGTGATGAATTTGCGCA--------GGGTTTAGCACGAATTTGAGGGCGTGCTGCGGGGC 138 consensus_15989#2 GATGGGTGTCTTTTCTTTC----GTGGGCGTGGGAGGG--TGGGGGGTATGTTTCCTCCT 93 ** * *** * * * * * * *** ** * * consensus_15989#0 GGGAGGAGGGAAGTACAACTACCAGAACGGC-GCGAGGTGCGGCATGTCGGGA-GCCTAC 1016 consensus_15989#1 GGGAGGAGGGAAGTACAACTACCAGAACGGCCGCGAGGTGCGGCATGTCGGGA-GCCTAC 197 consensus_15989#2 AGTCCCNGTGNCGGGCGCC------GAGGGTTGCGGGCCAC----TGTCGGGATGCCTAC 143 * * * * * * * ** *** * * ******** ****** consensus_15989#0 GCGTGCTCCA--ACCCGTCGTCGTCGTTGAG--CTGGGACGGCATCCA-TCTCACGGAGG 1071 consensus_15989#1 GCGTGCTCCA--ACCCGTCGTCGTCGTTGAG--CTGGGACGGCATCCA-TCTCACGGAGG 252 consensus_15989#2 GCGTGCTCCNGTACCNGTCTTCGTCGTTGTAGTCTGGGACGGCATCCACTCTCTCGGAGG 203 ********* *** *** ********* *************** **** ****** consensus_15989#0 CGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCA 1131 consensus_15989#1 CGGCGTACAAGCAGATCGCCGACGGGTGGGTCAACGGGCCCTACTGCCACCCGCCGATCA 312 consensus_15989#2 CGGCGTNCAAGCAGATCNCCGNCGG-TGGGTCAC--GGCCCTACTGCCACCCGCCGATCA 260 ****** ********** *** *** ******* ************************ consensus_15989#0 TGCCCTA-GATCATCGCCGGCGGCGGCGA-CGGCGGCCGGAGGATGGCCGGCTAG-CTGC 1188 consensus_15989#1 TGCCCTA-GATCATCGCCGGCGGCGGCGA-CGGCGGCCGGAGGATGGCCGGCTAG-CTGC 369 consensus_15989#2 TGCCCTATGATCATCCCCGGCGGCGGCGAGCGCCGTCCGGAGGATG-CCGGCTATTCTTC 319 ******* ******* ************* ** ** ********** ******* ** * consensus_15989#0 TGCTGATTTGATTTGTTTAGC-AGAAGAAGAGAAGAAAAATGGATAGC-AAGAGGAAGAA 1246 consensus_15989#1 TGCTGATTTGATTTGTTTAGC-AGAAGAAGAGAAGAAAAATGGATAGC-AAGAGGAAGAA 427 consensus_15989#2 TGCTGATTTGATTTGTTTAGCCAGAAGAAGAGAAGAAAAATGGATACCCNAGAGGAAGAA 379 ********************* ************************ * ********** consensus_15989#0 GAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGT 1306 consensus_15989#1 GAAGACATCTTGCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGT 487 consensus_15989#2 GAAGACATCTTNCGATCGACTGGGAAATGAATAAGATGGTGATTAGTTGATTTTCGTTGT 439 *********** ************************************************ consensus_15989#0 GGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGG 1366 consensus_15989#1 GGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGG 547 consensus_15989#2 GGGTGGTTAATTTGTTTTTGTTTTAGGTAATGCACATTTGTGTAGTATGTATGAGATTGG 499 ************************************************************ consensus_15989#0 GAGGCAATTTAATTATGTGTTGCAATTAATTAATTAAATCTTAGTAA--------AAAAA 1418 consensus_15989#1 GAGGCAATTTAATTATGTGTTGCAATTAATTAATTAAAAAATAGTAATTTGTTGCNAAAA 607 consensus_15989#2 GAGC--ATTTAATTATGTGTNGCCATTAAAAAAAAAA----------------------- 534 *** ************** ** ***** ** ** consensus_15989#0 AAAATGGTTTGGTTGG------ 1434 consensus_15989#1 AAAAAAAAAAAAAAAAAAAAAA 629 consensus_15989#2 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||