These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 26 consensus length = 1276 fasta sequence [TTTTTTTTTTTTTTTTTGAAACTTAAACAACCATTAATAT-AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC-GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAG-GGAGCTG-CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA-GGGAGGTTT-GCTGCTGAGCCGTAAATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGATCGACATGCGAGAAA-GGGGGAGAGAAATCCTGCGAGACTTGACTGATGGAACCATGGTATA-GGAAGCACTCAAGCATGCACTGGCAGAATCGCCGCCACCTCGCCAACA-GGCTGTCAAGCACCACGAGCAGCAAGCTCCGGGCGACAGCTTGCCCTGGCGAAGCAGGCCTCAAGAAGCTGCCGCCGCCGTCTCTAGGAACGGGGCGGCGACCTCCCGGACACCGACGACGAAGCCACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACTGTAGAGGGAGGAGGGGGAACCAGAGAAGGGGAAAGTTTTTCTACTCCTTCAGTCCATGTCAG-GTCCAAGGGGAATTCG] [+] EMBL CF281072 [TTTTTTTGGTTTTTTTTGAAACTTACACAACCATTAATAT AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTTTTTATTAAACCACGCAGCAGAGAAGGTGCACATCAACAG GGAGCTGTTGTTTTTGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAAATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGATCGACATGCGAGAAA GGGGGAGAGAAATCCTGCGAGACTTGACTGATGGAACCATGGTATA GGAAGCACTCAAGCATGCACTGGCAGAATCGCCGCCACCTCGCCAACA GGCTGTCAAGCACCACGAGCAGCAAGCTCCGGGCGAC ] [+] EMBL CA760143 [ TTTTTTTTTTGAAACTTAAACAACCATTAATAT AGAGCGACAGAGTTCACAGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAACAGGGAAACTGCACTAAGGCTACAAACTTCATGATGAAACCACACAGCAGAGAAGGTGCACATCAACAG GGAGCTG CGGTAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGGCTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAAATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTACATGGGATGAGCTGGTGGGAAACATAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGATCGACATGCGGGAAA GGGGGAGAGAAATCCTGCGAGACTTGATTGATGGAACCATGGTATA GGAAGCACTCAAGCATGCACCGGCAGAATTGCCGCCACCTCGCCAACG GGCTGTCAAGCACCACGAGCAGCAAGCTCCGGGCGACAGCTTGCCCTGGCGAAGCAGGCCTCA ] [+] EMBL CF278966 [ TTTTTTTTTTGAAACTTAAACAATCATTAATATNAGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCTTTCAGCAGAGAAGGTGCACATTAACAG GGAGCTG CGGCAATGCCTTTATTAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAAATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTC ] [+] EMBL CF277436 [ TTTTTTTGAAACTTAAACAACCATTAATAT AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAG GGAGCTG CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAAGGGGAGGTTTNGCTGCTGAGCCGTAAATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATC ] [+] EMBL CF280784 [ TTTTTTGAAACTTAAACAACCATTAATAT AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAG GGAGCTG CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAAATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGATCGACATGCGAGAAAGGGGGGAGAGAAATCCTGCGAGACTTGACTGATGGAACCATGGTATAGGGAAGCACTCAAGC ] [+] EMBL CF319628 [ TTTTTTGAAACTTAAACAACCATTAATAT AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAG GGAGCTG CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAGATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGA ] [+] EMBL CF333071 [ TTTTTTGAAACTTAAACAACCATTAATAT AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAG GGAGCTG CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAAATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGA ] [+] EMBL CF316540 [ TTTTTTGAGACTTAAACAACCATTAATAT AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAG GGAGCTG CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAAATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGA ] [+] EMBL CF279460 [ TTTTTTGAAACTTAAACAACCATTAATAT AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAG GGAGCTG CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAAATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGATCGACATGCGAGAAA GGGGGAGAGAAATCCTGCGAGACTTGACTGATGGAACCATGGTATA GGAAGCACTCAAGCATGCACTGGCAGAATCG ] [+] EMBL CF312174 [ TTTTTGAAACTTAAACAACCATTAATAT AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAGNGGAGCTG CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAAGGGGAGGTTT GCTGCTGAGCCGTAGATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGATCGACATGCGAGAAA GGGGGAGAGAAATCCTGCGAGACTTGACTGATGGAACCATGGTATA GGAAGCACTCAAGCATGCACTGGCAGAATCGCCGCCACCTCGCCAACAGGGCTGTCAAGCACCACGAGCAGCAAGCTCC ] [+] EMBL CF335509 [ TTTTTGAAACTTAAACAACCATTAATAT AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAG GGAGCTG CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAGATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGA ] [+] EMBL CF276118 [ CTTAAACAACCTTTAATAT AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAG GGAGCTG CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAGATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAAC ] [-] EMBL AK071488 [ CAACCATTAATAT AGAGCGACAGAGTTCACGGGAATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAG GGAGCTG CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAGATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGATCGACATGCGAGAAA GGGGGAGAGAAATCCTGCGAGACTTGACTGATGGAACCATGGTATA GGAAGCACTCAAGCATGCACTGGCAGAATCGCCGCCACCTCGCCAACA GGCTGTCAAGCACCACGAGCAGCAAGCTCCGGGCGACAGCTTGCCCTGGCGAAGCAGGCCTCAAGAAGCTGCCGCCGCCGTCTCTAGGAACGGGGCGGCGACCTCCCGGACACCGACGACGAAGCCACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACTGTAGAGGGAGGAGGGGGAACCAGAGAAGG ] [+] EMBL CF330317 [ ttttttAAACCATCCGTTTCGAAAGAAC GGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGTGCACATCAACAG GGAGCTG CGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGCGTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAAAA GGGAGGTTT GCTGCTGAGCCGTAGATTTTGAGGGGGCATCACCGGACTCAGCAAGAGAAGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTTGCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAACCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGATCGACATGCGAGAAA GGGGGAGAGAAATCCTGCGAGACTTGACTGATGGAACCATGGTATA GGAAGCACTCAAGCATGCACTGGCAGAATCGCCGCCACCTCGCCAACA GGCTGTCAAGCACCACGAGCAGCAAGCTCCGGGCGAC ] [-] EMBL CF330316 [ TA GGAAGCACTCAAGCATGCACTGGCAGAATCGCCGCCACCTCGCCAACA GGCTGTCAAGCACCACGAGCAGCAAGCTCCGGGCGACAGCTTGCCCTGGCGAAGCAGGCCTCAAGAAGCTGCCGCCGCCGTCTCTAGGAACGGGGCGGCGACCTCCCGGACACCGACGACGACGCCACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGGCGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACTGTAGAGGGAGGAGGGGGAACCAGAGAAGGGGAAAG TTTTCTACTCCTTCAGTCCA GTCAG GTCCAAGGGGAATTCG] [-] EMBL CF333072 [ GTCAAGCACCACGAGCAGCAAGCTCCGGGCGACAGCTTGCCCTGGCGAAGCAGGCCTCAAGAAGCTGCCGCCGCCGTCTCTAGGAACGGGGCGGCGACCTCCCGGACACCGACGACGAAGCCACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACTGTAGAGGGAGGAGGGGGAACCAGAGAAGGG ] [-] EMBL CF278965 [ TCAAGCACCACGAGCAGCAAGCTCCGGGCGACAGCTTGCCCTGGCGAAGCAGGCCTCAAGAAGCTGCCGCCGCCGTCTCTAGGAACGGGGCGGCGACCTCCCGGACACCGACGACGAAGCCACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACTGTAGAGGGAGGAGGGGGAACCAGAGAAGGGGAAAGTTTTTCTACTCCTTCAGTCGATGTCAGTGTC ] [-] EMBL CF276117 [ CAAGCACCACGAGCAGCAAGCTCCGGGCGACAGCTTGCCCTGGCGAAGCAGGCCTCAAGAAGCTGCCGCCGCCGTCTCTAGGAACGGGGCGGCGACCTCCCGGACACCGACGACGAAGCCACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACgg ] [-] EMBL CF335508 [ GAGCAGCAAGCTCCGGGCGACAGCTTGCCCTGGCGAAGCAGGCCTCAAGAAGCTGCCGCCGCCGTCTCTAGGAACGGGGCGGCGACCTCCCGGACACCGACGACGAAGCCACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAG ] [-] EMBL CF316541 [ GACGAAGCCACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGGCGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACg ] [-] EMBL CF277437 [ CGAAGCCACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTAC GTA ] [-] EMBL CF319629 [ CGAAGCCACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGATAGCCGGCNAAAGA CAGGGGAGGACAANCCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTG ] [-] EMBL CF313019 [ CGAAGCCACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCG TGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACCGTAGAGGGAGGAGGGGGAACCAGAGAAGGG ] [-] EMBL CF280785 [ CACTGACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACTGTAGAGGGAGGAGGGGGAACCAGAGAAGGGGAAAATCTTTCTACTCC TCAGTCCATGTCAG ] [-] EMBL CF279461 [ CTGACACTGCCACAGGGAGCCAGCTTTTCCCGTCGATTCGTCGGGACGGCGACATCCCGGACACCGACGACGAAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACAAAGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAAATTAGCAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACTG AGAGGAAAAAGGGGGAACCAGAGAAGG ] [-] EMBL CF312173 [ AACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACTGTAGAGGGAGGAGGGGGAACCAGAGA ] consensusID : consensus_15993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 482 fasta sequence [GACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGAACATCCCGGACACCGACGACGANAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCANCCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACTGTAGAGGGAGGAGGGGGAACCAGAGAATTTCTACTCCTTCAGTCCA] [-] EMBL CF281071 [GACACTGCCACAGGGAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGAACATCCCGGACACCGACGACGANAGCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCCGCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATCTCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCANCCCATGGAGCTCGCCGGCAAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGATTAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCCTCCAACCCTCGCTGGCGGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTACTGTAGAGGGAGGAGGGGGAACCAGAGAATTTCTACTCCTTCAGTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15993#0 TTTTTTTTTTTTTTTTTGAAACTTAAACAACCATTAATATAGAGCGACAGAGTTCACGGG 60 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 AATAAATCCCAGTACATTGCCAAACAGATAAAAAGGAAGCATAAAACCATCCGTTTCGAA 120 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 AGAACGGGGAACTGCACTAAGGCTACAAACTTCATGATGAAACCACGCAGCAGAGAAGGT 180 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 GCACATCAACAGGGAGCTGCGGCAATGCCGCGACGAATGCAACCTTGGGCCTCCTTTGGC 240 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 GTGCAGCACGCTTGACAAACTGGTAATCCCCATCCGGTTGCCTCCACGAAGACTGCACAA 300 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 AAGGGAGGTTTGCTGCTGAGCCGTAAATTTTGAGGGGGCATCACCGGACTCAGCAAGAGA 360 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 AGTCCACGGAGTTCGTCGTTAAATCTGAGAAGCGTGAGCTCAACCCGAACAACAAACCTT 420 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 GCATGGAATGAGCTGGTGGGAAACACAGAGGAAGAAGGAGCCCACATCCAGATCCCCAAA 480 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 CCCACTGAAGAACTCGAATGGTGGCAAACAAACTGCTGTCTTCTTGGATCGACATGCGAG 540 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 AAAGGGGGAGAGAAATCCTGCGAGACTTGACTGATGGAACCATGGTATAGGAAGCACTCA 600 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 AGCATGCACTGGCAGAATCGCCGCCACCTCGCCAACAGGCTGTCAAGCACCACGAGCAGC 660 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 AAGCTCCGGGCGACAGCTTGCCCTGGCGAAGCAGGCCTCAAGAAGCTGCCGCCGCCGTCT 720 consensus_15993#1 ------------------------------------------------------------ consensus_15993#0 CTAGGAACGGGGCGGCGACCTCCCGGACACCGACGACGAAGCCACTGACACTGCCACAGG 780 consensus_15993#1 ----------------------------------------------GACACTGCCACAGG 14 ************** consensus_15993#0 GAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGA-CATCCCGGACACCGACGACGAA- 838 consensus_15993#1 GAGCCAGCTTTTTCCGTCGATTCGTCGGGACGGCGAACATCCCGGACACCGACGACGANA 74 ************************************ ********************* consensus_15993#0 GCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCC 898 consensus_15993#1 GCAACTGGCACCGCCGCAAGGAGCCGGCTTCTCCCGGTCGCCGACGACGATGTAGCCGCC 134 ************************************************************ consensus_15993#0 GCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATC 958 consensus_15993#1 GCCGCCGCAAGGAACCAGCCTTTTCCGTCGATTCATCCACCGGTCTTCGGATCTCGCATC 194 ************************************************************ consensus_15993#0 TCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCACCC-ATGGAGCTCGCCGGC 1017 consensus_15993#1 TCCACCGCCACCAACCGCCGCCGCATCCGACCACACCGGCANCCCATGGAGCTCGCCGGC 254 ***************************************** ** *************** consensus_15993#0 AAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGAT 1077 consensus_15993#1 AAAAGACCAACTAGGGACAAACCCTAACTACAGGAGACACCTGACGACCTAATAACAGAT 314 ************************************************************ consensus_15993#0 TAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCC-TCCAACCCTCGCTGGC 1136 consensus_15993#1 TAACAACCTAATACTAGTAGAGGGGAGGTGGCCGGACCCCTCCCTCCAACCCTCGCTGGC 374 ******************************************* **************** consensus_15993#0 GGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTA 1196 consensus_15993#1 GGCAAGCCACTGGAATCGAAGGGGAAGAGGGGCCGGTGAGGAGAGATTTTGGGGAGAGTA 434 ************************************************************ consensus_15993#0 CTGTAGAGGGAGGAGGGGGAACCAGAGAAGGGGAAAGTTTTTCTACTCCTTCAGTCCATG 1256 consensus_15993#1 CTGTAGAGGGAGGAGGGGGAACCAGAGAA----------TTTCTACTCCTTCAGTCCA-- 482 ***************************** ******************* consensus_15993#0 TCAGGTCCAAGGGGAATTCG 1276 consensus_15993#1 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||