These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [TTACAACATCAAGTAAAAAATTCTCCAGAAAAGAAAAATTCCAATACATATAGAGAACTTTTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAATGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCCTTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCCTCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCATAGCGATAAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTCCTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAGCGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACTGGTGGTACCTCCTTAGTAATGGTAAAAATCATCTTATATATATTGCTATATTGGTACCCGAACAACTCATGTACAATCTTATACCAGACTACCCTTGAAGAAGAAACTAGCTACTGCCGTGCACAATATTACCAAGCAACTCCTTAAGAAGCAACCCATCCCATA] [+] EMBL CA761503 [TTACAACATCAAGTAAAAAATTCTCCAGAAAAGAAAAATTCCAATACATATAGAGAACTTTTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAATGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCCTTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCCTCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCATAGCGATAAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTCCTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAGCGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACTGGTGGTACCTCCTTAGTAATGGTAAAAATCATCTTATATATATTGCTATATTGGTACCCGAACAACTCATGTACAATCTTATACCAGACTACCCTTGAAGAAGAAACTAGCTACTGCCGTGCACAATATTACCAAGCAACTCCTTAAGAAGCAACCCATCCCATA] consensusID : consensus_16#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [AATTCCAATACATATAGAGAACTTTTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAATGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCCTTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCCTCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCATAGCGATGAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTCCTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAGCGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACTAGATAGGGAAGATATATCAAGCCAAAGTTATGACCATATATAATATCATGACATAATAGTTCAACGGTTAGATTTGAATGGTAACTATACTCAATACCTTAATTACCTGGTGGTACCTCCTTAATAATGGTAAAAATCATCTTATATATATTGCTATATTGTTACCCGAACAACTCATGTACAATCTTAT] [-] EMBL CA765973 [AATTCCAATACATATAGAGAACTTTTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAATGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCCTTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCCTCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCATAGCGATGAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTCCTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAGCGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACTAGATAGGGAAGATATATCAAGCCAAAGTTATGACCATATATAATATCATGACATAATAGTTCAACGGTTAGATTTGAATGGTAACTATACTCAATACCTTAATTACCTGGTGGTACCTCCTTAATAATGGTAAAAATCATCTTATATATATTGCTATATTGTTACCCGAACAACTCATGTACAATCTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16#0 TTACAACATCAAGTAAAAAATTCTCCAGAAAAGAAAAATTCCAATACATATAGAGAACTT 60 consensus_16#1 ------------------------------------AATTCCAATACATATAGAGAACTT 24 ************************ consensus_16#0 TTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAA 120 consensus_16#1 TTTACAATCCTTGAGGGGAGACATAGACCAAATCGTGGCCGTCTATTGAGCATCATCAAA 84 ************************************************************ consensus_16#0 TGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCC 180 consensus_16#1 TGGCTGAGAATCATTTCGTATCTAGTAGCGTCGGTGCCTAGTCCCACCGGGTACCAAGCC 144 ************************************************************ consensus_16#0 TTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCC 240 consensus_16#1 TTCCGACACCCTATAAAGGTTATGATTAATTTTCTTTTCGCACCACCCACTCCATGTTCC 204 ************************************************************ consensus_16#0 TCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCA 300 consensus_16#1 TCCAATGCATTCGTCCTTAACATCCTTCCCCGACGTATCGCCGCTGTCACCTAGCGGCCA 264 ************************************************************ consensus_16#0 TAGCGATAAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTC 360 consensus_16#1 TAGCGATGAGCTTAGTGCGGTGGATGAAGCAATGGACCGGCTCGATGACCTTTTGATCTC 324 ******* **************************************************** consensus_16#0 CTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAG 420 consensus_16#1 CTCCAACCCGGTACTAGCACCACAGACACGACGACCATAGGGGCGGGTGACAGAGGCCAG 384 ************************************************************ consensus_16#0 CGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACT-----GGTGGTA 475 consensus_16#1 CGTAAATCTCTTAGAGATATTGGATGCCATGGAGACCGAGCGAAAACTAGATAGGGAAGA 444 ************************************************ ** * consensus_16#0 CCTCCTTAGTAATGGTAAAAATCATCTTATATATATTGCTATATTGGTACCCGAACAACT 535 consensus_16#1 TATATCAAGCCAAAGTTATGACCATATATAATATCATGACATAATAGTTCAACGGTTAGA 504 * ** * ** * * *** * **** ** *** * ** * * consensus_16#0 CATGTACAATC-TTATACCAGAC----TACCCTTGAAGAAGAAACTAGCTACTGCCGTGC 590 consensus_16#1 TTTGAATGGTAACTATACTCAATACCTTAATTACCTGGTGGTACCTCCTTAATAATGGTA 564 ** * * ***** * ** * * * ** ** * * consensus_16#0 ACAATATTACCAAGCAACTCCTTAAGAAGCAACCC----ATCCCATA----------- 633 consensus_16#1 AAAATCATCTTATATATATTGCTATATTGTTACCCGAACAACTCATGTACAATCTTAT 622 * *** * * * * ** * **** * * *** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||