These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1604#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [TTAATCCTAAGAAGGTATGATTAATGATAACGTTGGCCACCTGAGTTCTATAATTTTACTTGTAGCCTGCTATTGTTTCCCTCCTTTTAGCGTGCACAGGGTCGGAACTAAATGTTGGGGTTTTCCAGCCTGTTGTTATTTTGTATTCCTGTTGCTTGTGACACTCTAGAGTAATCTTCATGCTATCTAGTTTTCTGTATTGACCGTCCTTTACCATACAAAACTTCAAAACTCTTAAACATGGTTAGAGAGCTTTGTAATTATCTAGTGAAACTCAACGTACTTGTGCATGTTTCGCATCGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACATGCATGATTTACTGTTTTTGAGCAGTAGTCTCATCAGAATACAATTCTTATTAAAATCAGTTGATGTTCAGAGCGAATAATCTGAAATAGGCTTAAGGTTAGGAGAACCTGATTCATGTATAATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATTGTTTTTATATCTAGA] [+] EMBL CF306500 [TTAATCCTAAGAAGGTATGATTAATGATAACGTTGGCCACCTGAGTTCTATAATTTTACTTGTAGCCTGCTATTGTTTCCCTCCTTTTAGCGTGCACAGGGTCGGAACTAAATGTTGGGGTTTTCCAGCCTGTTGTTATTTTGTATTCCTGTTGCTTGTGACACTCTAGAGTAATCTTCATGCTATCTAGTTTTCTGTATTGACCGTCCTTTACCATACAAAACTTCAAAACTCTTAAACATGGTTAGAGAGCTTTGTAATTATCTAGTGAAACTCAACGTACTTGTGCATGTTTCGCATCGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACATGCATGATTTACTGTTTTTGAGCAGTAGTCTCATCAGAATACAATTCTTATTAAAATCAGTTGATGTTCAGAGCGAATAATCTGAAATAGGCTTAAGGTTAGGAGAACCTGATTCATGTATAATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATTGTTTTTATATCTAGA] consensusID : consensus_1604#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 531 fasta sequence [GATTCGGCACGAGNTCGAGCTNAACATACTTGTGCATGTTTCGCATCGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACATGCATGATTTACTGTTTTTGAGCANTAGTCTCATCAAAATACAATTCTTATTAAAATCAGTTGATGTTCANAGCGAATAATCTGAAATAGGCTTAAGGTNAGGAGAACCNGATNCATGTNTAATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATNGTTTTTATATCTAGATGTTTTAAATTAGTTTCTTGTTGCACGACAANACGGCGTTGTTTTATTTCACATACACCCNTTTGTTTACNACCATGGACNCATTCTCTGTATTAGAATGCCCCTGTTTCACCATGGNCGGNCCACTTTGGGGANTTTTGTTCCAGACAGCTGGACAGAATCTGTTTTTCNCATTATGCNGTANNTCCCCNGGAAACCAGANAGNCTTCCCNGGGGTTGAAANAACCCCCNGGAAC] [+] EMBL AA753118 [GATTCGGCACGAGNTCGAGCTNAACATACTTGTGCATGTTTCGCATCGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACATGCATGATTTACTGTTTTTGAGCANTAGTCTCATCAAAATACAATTCTTATTAAAATCAGTTGATGTTCANAGCGAATAATCTGAAATAGGCTTAAGGTNAGGAGAACCNGATNCATGTNTAATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATNGTTTTTATATCTAGATGTTTTAAATTAGTTTCTTGTTGCACGACAANACGGCGTTGTTTTATTTCACATACACCCNTTTGTTTACNACCATGGACNCATTCTCTGTATTAGAATGCCCCTGTTTCACCATGGNCGGNCCACTTTGGGGANTTTTGTTCCAGACAGCTGGACAGAATCTGTTTTTCNCATTATGCNGTANNTCCCCNGGAAACCAGANAGNCTTCCCNGGGGTTGAAANAACCCCCNGGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1604#0 TTAATCCTAAGAAGGTATGATTAATGATAACGTTGGCCACCTGAGTTCTATAATTTTACT 60 consensus_1604#1 ------------------------------------------------------------ consensus_1604#0 TGTAGCCTGCTATTGTTTCCCTCCTTTTAGCGTGCACAGGGTCGGAACTAAATGTTGGGG 120 consensus_1604#1 ------------------------------------------------------------ consensus_1604#0 TTTTCCAGCCTGTTGTTATTTTGTATTCCTGTTGCTTGTGACACTCTAGAGTAATCTTCA 180 consensus_1604#1 ------------------------------------------------------------ consensus_1604#0 TGCTATCTAGTTTTCTGTATTGACCGTCCTTTACCATACAAAACTTCAAAACTCTTAAAC 240 consensus_1604#1 ------------------------------------------------------------ consensus_1604#0 ATGGTTAGAGAGCTTTGTAATTATCTAGTGAAACTCAACGTACTTGTGCATGTTTCGCAT 300 consensus_1604#1 -----------GATTCGGCACGAGNTCG---AGCTNAACATACTTGTGCATGTTTCGCAT 46 * ** * * * * * * ** *** ******************** consensus_1604#0 CGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACAT 360 consensus_1604#1 CGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGGTTTCTTAAATATTTTTCCACAT 106 ************************************************************ consensus_1604#0 GCATGATTTACTGTTTTTGAGCAGTAGTCTCATCAGAATACAATTCTTATTAAAATCAGT 420 consensus_1604#1 GCATGATTTACTGTTTTTGAGCANTAGTCTCATCAAAATACAATTCTTATTAAAATCAGT 166 *********************** *********** ************************ consensus_1604#0 TGATGTTCAGAGCGAATAATCTGAAATAGGCTTAAGGTTAGGAGAACCTGATTCATGTAT 480 consensus_1604#1 TGATGTTCANAGCGAATAATCTGAAATAGGCTTAAGGTNAGGAGAACCNGATNCATGTNT 226 ********* **************************** ********* *** ***** * consensus_1604#0 AATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATTGTTTTT 540 consensus_1604#1 AATGAGTTCTCATTGTTTGTTACTATGATCACTCTGGAGTTCTTATTGCTGATNGTTTTT 286 ***************************************************** ****** consensus_1604#0 ATATCTAGA--------------------------------------------------- 549 consensus_1604#1 ATATCTAGATGTTTTAAATTAGTTTCTTGTTGCACGACAANACGGCGTTGTTTTATTTCA 346 ********* consensus_1604#0 ------------------------------------------------------------ consensus_1604#1 CATACACCCNTTTGTTTACNACCATGGACNCATTCTCTGTATTAGAATGCCCCTGTTTCA 406 consensus_1604#0 ------------------------------------------------------------ consensus_1604#1 CCATGGNCGGNCCACTTTGGGGANTTTTGTTCCAGACAGCTGGACAGAATCTGTTTTTCN 466 consensus_1604#0 ------------------------------------------------------------ consensus_1604#1 CATTATGCNGTANNTCCCCNGGAAACCAGANAGNCTTCCCNGGGGTTGAAANAACCCCCN 526 consensus_1604#0 ----- consensus_1604#1 GGAAC 531 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||