These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16043#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [CATAAATAGACCCTTAAAAGATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCCCCCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTTAAGAGGCTGCAGCAGCAGCCTCCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTGCGAAGATTGCAAAAAGTTCAGTTCAGTAGCACGGCGAAACAGCCCAACAGTATTAGAATGGACAGACAGGAAAACATATTTATGTAAGGACAGAGAGAAGTATATGGACCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCTTCAGAAGATTATAGAAAAAGAAATAGTTAGCAACGTCATCGTGAAATATCTTCGTTAACACAAAACACAGTAACAAGTTAATATAAAGAACTGTTGGCAAGGTAGATCAGATTCATATAAGAATTGACTAATTGATTACAAAAGGGACATGAGGGCAATAGATAGCTAAAAATTTGGAAGTAGCAGTGAGATTTTACCAGTTTG] [+] EMBL CB673964 [CATAAATAGACCCTTAAAAGATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCCCCCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTTAAGAGGCTGCAGCAGCAGCCTCCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTGCGAAGATTGCAAAAAGTTCAGTTCAGTAGCACGGCGAAACAGCCCAACAGTATTAGAATGGACAGACAGGAAAACATATTTATGTAAGGACAGAGAGAAGTATATGGACCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCTTCAGAAGATTATAGAAAAAGAAATAGTTAGCAACGTCATCGTGAAATATCTTCGTTAACACAAAACACAGTAACAAGTTAATATAAAGAACTGTTGGCAAGGTAGATCAGATTCATATAAGAATTGACTAATTGATTACAAAAGGGACATGAGGGCAATAGATAGCTAAAAATTTGGAAGTAGCAGTGAGATTTTACCAGTTTG] consensusID : consensus_16043#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 592 fasta sequence [TTTTTTGGGGCATGTAACTGGCTTGACAACCATTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAAC-AGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT-AAGAGGCTGCAGCAGCAGCCT-CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTCTTGGAATTAACGCCGGCTC] [-] EMBL AU082445 [TTTTTTGGGGCATGTAACTGGCTTGACAACCATTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAAC AGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTTCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGNTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGNTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTC ] [-] EMBL AK059406 [ GGGGCATGTAACTGGCTTGACAACCATTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAGC AGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGCTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTCTTGGAATTA ] [-] EMBL AK122061 [ ACAACCATTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAAC AGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTCTTGGAATTAACG ] [+] EMBL CF300984 [ tttttTTC TAAATAGATGGATAAATTATGCAAC AGTACACAAAGAGGTACATAGTTCACTTCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTCTTGGGATT ] [-] EMBL OSS16365A [ AAATAGATGGATAAATTATGCAACAAGTACACAAAGAGGTACATAGGTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTTAAAGA GCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTC CCTTCTCGGCGTACTGCTNAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTCTTGGAATTAACGCCGGCTC] [-] EMBL AU197756 [ ATAAATTATGCAAC AGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTT ] [-] EMBL CF300985 [ GTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT AAGAGGCTGCAGCAGCAGCCTCCCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCTTCTTCTTTTC ] [-] EMBL CB685850 [ CTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTGGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTATGGTTC ] consensusID : consensus_16043#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [TNTTNNNTTTNANNNNNTNNNNNNNGGCTGNACAACCATTATTNTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTNATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTTAAGAGGCTGCAGCAGCAGCCTCCTCCAGGAGCTGCTTCACCTTGGTGANGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCCTCG] [-] EMBL CA755037 [TNTTNNNTTTNANNNNNTNNNNNNNGGCTGNACAACCATTATTNTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTNATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTTAAGAGGCTGCAGCAGCAGCCTCCTCCAGGAGCTGCTTCACCTTGGTGANGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCCTCG] consensusID : consensus_16043#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 559 fasta sequence [TTTTTTTTTTTTTTTTTTTGG-TTGACAA-CC-A-TTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC-AT-CCCGAATTG-ATAGAATGGTAAGTTGTC-AGC-AA-CC-AGATTAGCATAGAGTTGTTC-AGCTGAC-AGAAGCCATGTAGCATAGAGTTC-ATAACTTCTT-AAGAGGCTGC-AGCAGC-AGCCTCCTCCAGGAGCTGCTTCACCTT-GGTGATGTAGTCGCTC-ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT-CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC-AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCT] [-] EMBL AU174447 [TTTTTTTTTTTTTTTTTTTGGCTTGACAA CC A TTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC AT CCCGAATTG ATAGAATGGTAAGTTGTC AGC AA CC AGATTAGCATAGAGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTT AAGAGGCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTC ] [-] EMBL BI797105 [ TTTTTTTTTTAACGGG TTGACAAGCCGAGTTATTTTTCTA TGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACGAT CCCGAA TG ATAGAAGGGTAAGTTGTC AGC AA CC AGATTAGCATAGAGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTT AAGAGGCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTTGGGTGATGTAG ] [-] EMBL AY121834 [ TTTTTTTTTT TTGACAA CC A TTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC AT CCCGAATTGAATAGAATGGTAAGTTGTCAAGCAAA CCAAGATTAGCATAGAGTTGTTCAAGCTGACAAGAAGCCATGTAGCATAGAGTTCAATAACTTCTTAAAGAAGCTGCAAGCAGCAAGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTCAATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCT] [-] EMBL AU082422 [ TTTTTTTTTT TTGACAA CC A TTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC AT CCCGAATTG ATAGAATGGTAAGTTGTC AGC AA CC AGATTAGCATAGAGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTT AAGAGGCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAAACGGTGGCCTGCTTGTAGAGTCCATAGAGG ] [-] EMBL AU082442 [ TTTTTTTGGCTTGACAA CC A TTATTTTTCTATTGTGCAGTACACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC AT CCCGAATTG ATAGAATGGTAAGTTGTC AGC AA CC AGATTAGCATAGNGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTT AAGAGGCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTNCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGNCCCTCTGGGCGAATCTGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCT ] [-] EMBL AU082443 [ ttTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCAC AT CCCGAATTG ATAGAATGGTAAGTTGTC AGC AA CC AGATTAGCATAGAGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTT AAGAGGCTGC AGCAGC A C CCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCCTTt ] [-] EMBL C73357 [ TGGAT AATTATGCAACAGTACACAAAGAGGTACATAGTCCAC AT CCCGAATTG ATAGAATGGTAAGTTGTC AGC AACCC AGATTAGCATAGAGTTGTTCAAGCTGAC AGAAGCCATGTAGCATAGAGTTC ATAACTTCTTAAAGA GCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTT ] [-] EMBL OSS16464A [ ACATAGTCCAC ATCCCCGAATTG ATAGAATGGTAAG TGTC AGC AA CC AGATTAGCATAGAGTTGTTC AGCTGAC AGAAGCCATGTAGCATAGAGTTC ATANCTTCTT AAGA GCTGC AGCAGC AGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTC ATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCA ] [-] EMBL OSR19081A [ TTGAATAGAATGGTAAGTTGTCAAGCAAA CCAAGATTAGCATAGAGTTGTTCAAGCTGACAAGAAGCCATGTAGCATAGAGTTCAATAACTTCTTAAAGAAGCTGCAAGCAGCAAGCCTCCTCCAGGAGCTGCTTCACCTT GGTGATGTAGTCGCTCAATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCAT CCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCC AACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCT] consensusID : consensus_16043#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 527 fasta sequence [TACGTCACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT-A-AGAGGCT-GCAGCAGCAGCCT----CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCT] [+] EMBL CF308004 [TACGTCACGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCATCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT A AGAGGCT GCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTA ] [-] EMBL CB000989 [ tTTTTTTTTTGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT A AGAGGCT GCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCTTCTCT] [-] EMBL AU057154 [ TTTTTTTTTTTTTTTT TAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT A AGAGGCT GCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCNCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACNGCTCAAAATCCTC ] [-] EMBL AU058350 [ TTTTTTTTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGGTGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT ANAGA GCT GCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTT ] [-] EMBL CF308003 [ TTTTTTTACAAGATAATATGATTCATAGGACTAATAGTCTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT A AGAGGCTCGCAGCACCACCCTTTCCCCTCCCAGAG TGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTAC ] [-] EMBL AU082401 [ ttttTTCATAAATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTCACATCCCGAATTGATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAGCTGACAGAAGCCATGTAGCATAGAGTTCATAACTTCTT A AGAGGCT GCAGCAGCAGCCT CCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACAGCTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCAGTATTGACATCTCCAACGGTGGCCTGCTTGTAGAGTCCATAGAGGATAAGCTTGTTCTCGTTGCTAGTGCTCTCCGGCAAGGTCTTCGCCTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCTTAAAGTTTTTCAGATTCT ] [-] EMBL AU065974 [ CATGTAGCATAGAGTTCATAACTTCTTAA AGA GCT GCAGCAGCAGCCT NCTCCAGGAGCTGCTTCACCTTGGTGATGTAGTCGCTCATTGCTTCCTCCTTCGATTTGCCTTCAACANNTTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATCTGCCAGGACGAGCAGTATTGACATCTCCAACGGTGNCCTNCTTGTAGAGTCCATAGAGGATAAGCTTGNCCNCGTTGCTAGTGCTCTCCGGNAAGGTCTTCGACTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATANCGGCTTAAAGTTTTTC ] consensusID : consensus_16043#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [TTTTGAAAGATTACAAGATAATATGATTCATAGGAGTAATAGTCTTCATAAATAGATGGATAAGTTATGCAAAAGTAAAAAGAGGTACATAGTTCGACATCCCGAATTGATAGAATGGTAAGTTGTTAGCAACCAGATTAGCATAGATGTGTTCAGGCTGAGCAGAAGGCATGTAGCATAGAGTTCATAACTTCTTAACGAGGTTGTAGCAGCAGCACTCCTCCAGGAGCTGCTTCACCTGGGCTGATGTAGTCGCGTGCGATAGCTTGCCTCCGTTCGAGTTGCGCTTACAAGCAGCTGTTCCAGTGCATCCCATTTCGCCCTGGTCCCTCGTGGGGCGAATATGCCAGGACGACGCGAGATATTGAGCATCTCCAACGGGTGGCCTGTCTTGTAGAGTCCATAGAGGATAAGCTTGTTCATCGTTGCTAGTGCTCTCGCGGACAAGGTGCTTCGCCGTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCT] [-] EMBL BI798688 [TTTTGAAAGATTACAAGATAATATGATTCATAGGAGTAATAGTCTTCATAAATAGATGGATAAGTTATGCAAAAGTAAAAAGAGGTACATAGTTCGACATCCCGAATTGATAGAATGGTAAGTTGTTAGCAACCAGATTAGCATAGATGTGTTCAGGCTGAGCAGAAGGCATGTAGCATAGAGTTCATAACTTCTTAACGAGGTTGTAGCAGCAGCACTCCTCCAGGAGCTGCTTCACCTGGGCTGATGTAGTCGCGTGCGATAGCTTGCCTCCGTTCGAGTTGCGCTTACAAGCAGCTGTTCCAGTGCATCCCATTTCGCCCTGGTCCCTCGTGGGGCGAATATGCCAGGACGACGCGAGATATTGAGCATCTCCAACGGGTGGCCTGTCTTGTAGAGTCCATAGAGGATAAGCTTGTTCATCGTTGCTAGTGCTCTCGCGGACAAGGTGCTTCGCCGTTCTCGGCGTACTGCTCAAAATCCTCCTGCAGACCCATAGCGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16043#1 ------TTTTTTGGGGCATGTAACTGGCTTGACAACCATTATTTTTCTATTGTGCAGTAC 54 consensus_16043#3 ------TTTTTTTTTTTTTTTTTTTGG-TTGACAACCATTATTTTTCTATTGTGCAGTAC 53 consensus_16043#2 TNTTNNNTTTNANNNNNTNNNNNNNGGCTGNACAACCATTATTNTTCTATTGTGCAGTAC 60 consensus_16043#4 -----------------TACGTCACGGCATGACAGTGTTTTTTTTTTTTTTTTTT----- 38 consensus_16043#5 ------------------------------------------------------------ consensus_16043#0 ------------------------------------------------------------ consensus_16043#1 ACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATA 114 consensus_16043#3 ACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTAATAGTCTTCATA 113 consensus_16043#2 ACAGCCAGAGAGATGAAAGATTACAAGATAATATGATTCATAGGACTNATAGTCTTCATA 120 consensus_16043#4 --------------------TTACAAGATAATATGATTCATAGGACTAATAGTCTTCATA 78 consensus_16043#5 ----------TTTTGAAAGATTACAAGATAATATGATTCATAGGAGTAATAGTCTTCATA 50 consensus_16043#0 --------------------------------------------------------CATA 4 **** consensus_16043#1 AATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTC-ACATCCCGAATT 173 consensus_16043#3 AATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTC-ACATCCCGAATT 172 consensus_16043#2 AATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTC-ACATCCCGAATT 179 consensus_16043#4 AATAGATGGATAAATTATGCAACAGTACACAAAGAGGTACATAGTTC-ACATCCCGAATT 137 consensus_16043#5 AATAGATGGATAAGTTATGCAAAAGTAAA--AAGAGGTACATAGTTCGACATCCCGAATT 108 consensus_16043#0 AATAGACCCTTAAAAGATGCAACAGTACACAAAGAGGTACATAGTTC-ACATCCCGAATT 63 ****** *** ****** **** * **************** ************ consensus_16043#1 GATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAG-CTGA-CAGAAG 231 consensus_16043#3 GATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAG-CTGA-CAGAAG 230 consensus_16043#2 GATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAG-CTGA-CAGAAG 237 consensus_16043#4 GATAGAATGGTAAGTTGTCAGCAACCAGATTAGCATAGAGTTGTTCAG-CTGA-CAGAAG 195 consensus_16043#5 GATAGAATGGTAAGTTGTTAGCAACCAGATTAGCATAGATGTGTTCAGGCTGAGCAGAAG 168 consensus_16043#0 GATAGAATGGTAAGTTGTCAGCCCCCAGATTAGCATAGAGTTGTTCAG-CTGA-CAGAAG 121 ****************** *** *************** ******* **** ****** consensus_16043#1 CCATGTAGCATAGAGTTCATAACTTCTTAA-GAGGCTGCAGCAGCAGC-CTCCTCCAGGA 289 consensus_16043#3 CCATGTAGCATAGAGTTCATAACTTCTTAA-GAGGCTGCAGCAGCAGC-CTCCTCCAGGA 288 consensus_16043#2 CCATGTAGCATAGAGTTCATAACTTCTTAA-GAGGCTGCAGCAGCAGC-CTCCTCCAGGA 295 consensus_16043#4 CCATGTAGCATAGAGTTCATAACTTCTTAA-GAGGCTGCAGCAGCAGC-CTCCTCCAGGA 253 consensus_16043#5 GCATGTAGCATAGAGTTCATAACTTCTTAACGAGGTTGTAGCAGCAGCACTCCTCCAGGA 228 consensus_16043#0 CCATGTAGCATAGAGTTCATAACTTCTTAA-GAGGCTGCAGCAGCAGC-CTCCTCCAGGA 179 ***************************** **** ** ********* *********** consensus_16043#1 GCTGCTTCACCTTGG-TGATGTAGTCGCTC---ATTGCTT-CCTCC-TTCGATTTGCCT- 342 consensus_16043#3 GCTGCTTCACCTTGG-TGATGTAGTCGCTC---ATTGCTT-CCTCC-TTCGATTTGCCT- 341 consensus_16043#2 GCTGCTTCACCTTGG-TGANGTAGTCGCTC---ATTGCTT-CCTCC-TTCGATTTGCCT- 348 consensus_16043#4 GCTGCTTCACCTTGG-TGATGTAGTCGCTC---ATTGCTT-CCTCC-TTCGATTTGCCT- 306 consensus_16043#5 GCTGCTTCACCTGGGCTGATGTAGTCGCGTGCGATAGCTTGCCTCCGTTCGAGTTGCGC- 287 consensus_16043#0 GCTGCTTCACCTTGG-TGATGTAGTCGCTC---ATTGCTT-CCTCC-TTCGATTTGCCTG 233 ************ ** *** ******** ** **** ***** ***** **** consensus_16043#1 ------TCA---ACAGCT---TTCCA-TGCATCCCATTTCGCCCTG-TCCCTCT-----G 383 consensus_16043#3 ------TCA---ACAGCT---TTCCA-TGCATCCCATTTCGCCCTG-TCCCTCT-----G 382 consensus_16043#2 ------TCA---ACAGCT---TTCCA-TGCATCCCATTTCGCCCTG-TCCCTCT-----G 389 consensus_16043#4 ------TCA---ACAGCT---TTCCA-TGCATCCCATTTCGCCCTG-TCCCTCT-----G 347 consensus_16043#5 ------TTACAAGCAGCTG--TTCCAGTGCATCCCATTTCGCCCTGGTCCCTCGTG---G 336 consensus_16043#0 CGAAGATTGCAAAAAGTTCAGTTCAGTAGCACGGCGAAACAGCCCAACAGTATTAGAATG 293 * ** * *** *** * * ** * consensus_16043#1 GGCGAA--------------TATGCCAGGACGA---GCAGTATTGA-CATCTCCAACGG- 424 consensus_16043#3 GGCGAA--------------TATGCCAGGACGA---GCAGTATTGA-CATCTCCAACGG- 423 consensus_16043#2 GGCGAA--------------TATGCCAGGACGA---GCAGTATTGA-CATCTCCAACGG- 430 consensus_16043#4 GGCGAA--------------TATGCCAGGACGA---GCAGTATTGA-CATCTCCAACGG- 388 consensus_16043#5 GGCGAA--------------TATGCCAGGACGACGCGAGATATTGAGCATCTCCAACGGG 382 consensus_16043#0 GACAGACAGGAAAACATATTTATGTAAGGACAGAGAGAAGTATATG-GACCTTCAACAGC 352 * * * **** ***** * *** * ** **** * consensus_16043#1 ------------------TGGCCTG-CTTGTAGAGTCCATAG---AGGATAAGCTT--GT 460 consensus_16043#3 ------------------TGGCCTG-CTTGTAGAGTCCATAG---AGGATAAGCTT--GT 459 consensus_16043#2 ------------------TGGCCTG-CTTGTAGAGTCCATAG---AGGATAAGCTT--GT 466 consensus_16043#4 ------------------TGGCCTG-CTTGTAGAGTCCATAG---AGGATAAGCTT--GT 424 consensus_16043#5 ------------------TGGCCTGTCTTGTAGAGTCCATAG---AGGATAAGCTT--GT 419 consensus_16043#0 TTTCCATGCATCCCATTTCGCCCTGTCCCTCTGGGCGAATATGCCAGGACGAGCTTCAGA 412 * **** * * * *** **** ***** * consensus_16043#1 TC-TCGTTGCTAGTGCTCTCC--GGCAAGGT-CTTCGCC--TTCTCGGCGTACTGCTCAA 514 consensus_16043#3 TC-TCGTTGCTAGTGCTCTCC--GGCAAGGT-CTTC-CC--TTCTCGGCGTACTGCTCAA 512 consensus_16043#2 TC-TCGTTGCTAGTGCTCTCC--GGCAAGGT-CTTCGCC--TTCTCGGCGTACTGCTCAA 520 consensus_16043#4 TC-TCGTTGCTAGTGCTCTCC--GGCAAGGT-CTTCGCC--TTCTCGGCGTACTGCTCAA 478 consensus_16043#5 TCATCGTTGCTAGTGCTCTCGCGGACAAGGTGCTTCGCCG-TTCTCGGCGTACTGCTCAA 478 consensus_16043#0 AGATTATAGAAAAAGAAATAGTTAGCAACGT-CATCGTGAAATATCTTCGT-TAACACAA 470 * * * * * * *** ** * ** * ** *** * *** consensus_16043#1 AATCCTCCTGCAGACCCATA------GCGGCT--TAAAGTTTTTCAGATTCTTCTCTTCT 566 consensus_16043#3 AATCCTCCTGCAGACCCATA------GCGGCT--TAAAGTTTTTCAGATTCTTCT----- 559 consensus_16043#2 AATCCTCCTGCAGACCCATA------GCGGCT--TAAAGTTTTTCAGATTCTTCTCCTCG 572 consensus_16043#4 AATCCTCCTGCAGACCCATA------GCGGCT--TAAAGTTTTTCAGATTCTTCTCT--- 527 consensus_16043#5 AATCCTCCTGCAGACCCATA------GCGGCT---------------------------- 504 consensus_16043#0 AACACAGTAACAAGTTAATATAAAGAACTGTTGGCAAGGTAGATCAGATTCATATAAGAA 530 ** * ** *** * * * consensus_16043#1 TCTTTTCTTGGAATTAACGCCGGCTC---------------------------------- 592 consensus_16043#3 ------------------------------------------------------------ consensus_16043#2 ------------------------------------------------------------ consensus_16043#4 ------------------------------------------------------------ consensus_16043#5 ------------------------------------------------------------ consensus_16043#0 TTGACTAATTGATTACAAAAGGGACATGAGGGCAATAGATAGCTAAAAATTTGGAAGTAG 590 consensus_16043#1 --------------------- consensus_16043#3 --------------------- consensus_16043#2 --------------------- consensus_16043#4 --------------------- consensus_16043#5 --------------------- consensus_16043#0 CAGTGAGATTTTACCAGTTTG 611 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||