These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1364 fasta sequence [ACAGCCCAAGCGAACCAGCAGTCCAGTCCAGCACGGGCGCACGCTCAAGGACACCCAGTGTACGACGAGAGATGGCCTCTGCTCGCCGCTGGCTCTGCCTGATACTCGCCGCCGCGGCGGCGGCGGCGGCGTCGGGTGCTCCAGCTCCGGAGGACGACCCGGGCATGCCGATGGCGGCGCGGCACCGGTGCTGGATGGCGAGGGTGGGGCGCACGTACGCGGACGCCGCGGAGAAGGCGCGCCGCTTCGAGGTGTTCCGCGCCAACGCGGAGCGGATCGACGCCGCCAACCGCGCCGGTGACCTCACCTACACCCTGGGGCTCACCCCGTTCGCCGACCTCACCGCCGACGAGTTCCGCGCCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGCGAGGGTGTTGTTCGAGCAGGAGGAGAAGGCGGCGAAGCAGCATCTCCCTCCCTCACGCCCGCCTGCGGTGTGGGGCAGCAAGGACTGGCGTGACCTCGGCGCCGTCACCCCTGTCCAGGATCAAGGCAAGAATAATTGCAACAGCTGCTGGGCGTTCGCGGTGGTGGCGGCGACGGAGGGGCTGATCAAGATCGAGACCGGCAACGTGACGCCGTTGTCGGCGCAGCAGGTGCTGGACTGCACCGGCGGGGACAACACGTGCAAGGGAGGCCACATCCACGAGGCCCTGCGCTACATCGCCACCGCCAGCGCCGGCGGCCGGCTGAGCACGGACAAGAGCTACCGGCCGTACGACGGGGAGAAGGGCACCTGCGCCGCCGGCTCCGGCTCCGCGTCGTCCTCGTCCGTCGCCGTCGTCATCCGCGGCGTGCAGAAGGTGACGCCGCACGACAAGGACGCGCTGCGCGCCGCCGTGGAGAGGCAGCCCGTGGCGGCGGACATGGACTCGAGCGACCCAGAGTTCAGGGGATTCAAGGGAGGACGCGTGTACCGCGGCAGCGCTGGCTGCGGGAAGAAGCGGAACCACGCGGTGGCGGTGGTCGGGTACGGGACGGCGAGCGACGGCACGCCGTACTGGCTGCTCAAGAACTCGTGGGCCACCGACTGGGGGGAGAACGGCTACATGCGCATCGCCGTCGACGCCGACTGCGGCGTCTCCAGCCGCCCCGCCTACCCCTTCGTCTAATAACTAAGGATACCGTGCGTCGATCGCTGTCGCGTTTCCTTCCTCGTTTCGTACTAAGTTACCGTAATTTCGTCCATTATATTCGTATACATGCTTGAAATTCGGAAGCATGTATATAAGAGTATATCGTAGAGTCAATAACCCATTTGTACTAAGCAAGTGTATGTATATGCATGCGTTGTATCCTTCTTTTTTCCTTGAATACATATCACA] [+] EMBL AK110832 [ACAGCCCAAGCGAACCAGCAGTCCAGTCCAGCACGGGCGCACGCTCAAGGACACCCAGTGTACGACGAGAGATGGCCTCTGCTCGCCGCTGGCTCTGCCTGATACTCGCCGCCGCGGCGGCGGCGGCGGCGTCGGGTGCTCCAGCTCCGGAGGACGACCCGGGCATGCCGATGGCGGCGCGGCACCGGTGCTGGATGGCGAGGGTGGGGCGCACGTACGCGGACGCCGCGGAGAAGGCGCGCCGCTTCGAGGTGTTCCGCGCCAACGCGGAGCGGATCGACGCCGCCAACCGCGCCGGTGACCTCACCTACACCCTGGGGCTCACCCCGTTCGCCGACCTCACCGCCGACGAGTTCCGCGCCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGCGAGGGTGTTGTTCGAGCAGGAGGAGAAGGCGGCGAAGCAGCATCTCCCTCCCTCACGCCCGCCTGCGGTGTGGGGCAGCAAGGACTGGCGTGACCTCGGCGCCGTCACCCCTGTCCAGGATCAAGGCAAGAATAATTGCAACAGCTGCTGGGCGTTCGCGGTGGTGGCGGCGACGGAGGGGCTGATCAAGATCGAGACCGGCAACGTGACGCCGTTGTCGGCGCAGCAGGTGCTGGACTGCACCGGCGGGGACAACACGTGCAAGGGAGGCCACATCCACGAGGCCCTGCGCTACATCGCCACCGCCAGCGCCGGCGGCCGGCTGAGCACGGACAAGAGCTACCGGCCGTACGACGGGGAGAAGGGCACCTGCGCCGCCGGCTCCGGCTCCGCGTCGTCCTCGTCCGTCGCCGTCGTCATCCGCGGCGTGCAGAAGGTGACGCCGCACGACAAGGACGCGCTGCGCGCCGCCGTGGAGAGGCAGCCCGTGGCGGCGGACATGGACTCGAGCGACCCAGAGTTCAGGGGATTCAAGGGAGGACGCGTGTACCGCGGCAGCGCTGGCTGCGGGAAGAAGCGGAACCACGCGGTGGCGGTGGTCGGGTACGGGACGGCGAGCGACGGCACGCCGTACTGGCTGCTCAAGAACTCGTGGGCCACCGACTGGGGGGAGAACGGCTACATGCGCATCGCCGTCGACGCCGACTGCGGCGTCTCCAGCCGCCCCGCCTACCCCTTCGTCTAATAACTAAGGATACCGTGCGTCGATCGCTGTCGCGTTTCCTTCCTCGTTTCGTACTAAGTTACCGTAATTTCGTCCATTATATTCGTATACATGCTTGAAATTCGGAAGCATGTATATAAGAGTATATCGTAGAGTCAATAACCCATTTGTACTAAGCAAGTGTATGTATATGCATGCGTTGTATCCTTCTTTTTTCCTTGAATACATATCACA] consensusID : consensus_1608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CCGACCTCACCGCCGACGAGTTCCGCGCCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGTGAGGGTGTTGTTCGAGCAGGAGGATTTGGCGGCGAAGCAGCATCTCTCTCCCTCACGCCCGCCTGCTGGGTGGGGCAGCAAGGACTGACGTGACCTCTTAGCCCGTCCCCGTGTCCAGGATCAAGACAGAGAGTAGTTGCATACAGCTGCTGTGCGTTCCAGGCGCAGACGTCGGAATACTGGCTAGTGTAGACCCCAAGCGGAGCTGAGCAGGCGTCAATTTGAGAGCCCTTTTGGTGGCCTCTACGCGTCGGCAATGAGATTGCGAGGGAGGAGGAGCGCGAGCTCGCGCGGCGAAGCGATACGTACTTTCTGGGGGGGCCTGACGAGCGGTGAGGCATGCTACTCGGCGTCGCTTCCGCCGCGGAGAGCGCGGGATCGTAGAGCCGATGGTGCGCAGGTCAGCGTGAGGATTTGGGGCATACTACGCGCAGGCTGGAGCGGGCGCTGTGTGGGATAGGCGGCTAGGGCTTGACTGCTGGCGCAGGATGTTG] [+] EMBL CA757211 [CCGACCTCACCGCCGACGAGTTCCGCGCCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGTGAGGGTGTTGTTCGAGCAGGAGGATTTGGCGGCGAAGCAGCATCTCTCTCCCTCACGCCCGCCTGCTGGGTGGGGCAGCAAGGACTGACGTGACCTCTTAGCCCGTCCCCGTGTCCAGGATCAAGACAGAGAGTAGTTGCATACAGCTGCTGTGCGTTCCAGGCGCAGACGTCGGAATACTGGCTAGTGTAGACCCCAAGCGGAGCTGAGCAGGCGTCAATTTGAGAGCCCTTTTGGTGGCCTCTACGCGTCGGCAATGAGATTGCGAGGGAGGAGGAGCGCGAGCTCGCGCGGCGAAGCGATACGTACTTTCTGGGGGGGCCTGACGAGCGGTGAGGCATGCTACTCGGCGTCGCTTCCGCCGCGGAGAGCGCGGGATCGTAGAGCCGATGGTGCGCAGGTCAGCGTGAGGATTTGGGGCATACTACGCGCAGGCTGGAGCGGGCGCTGTGTGGGATAGGCGGCTAGGGCTTGACTGCTGGCGCAGGATGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1608#0 ACAGCCCAAGCGAACCAGCAGTCCAGTCCAGCACGGGCGCACGCTCAAGGACACCCAGTG 60 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 TACGACGAGAGATGGCCTCTGCTCGCCGCTGGCTCTGCCTGATACTCGCCGCCGCGGCGG 120 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 CGGCGGCGGCGTCGGGTGCTCCAGCTCCGGAGGACGACCCGGGCATGCCGATGGCGGCGC 180 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 GGCACCGGTGCTGGATGGCGAGGGTGGGGCGCACGTACGCGGACGCCGCGGAGAAGGCGC 240 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 GCCGCTTCGAGGTGTTCCGCGCCAACGCGGAGCGGATCGACGCCGCCAACCGCGCCGGTG 300 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 ACCTCACCTACACCCTGGGGCTCACCCCGTTCGCCGACCTCACCGCCGACGAGTTCCGCG 360 consensus_1608#1 ---------------------------------CCGACCTCACCGCCGACGAGTTCCGCG 27 *************************** consensus_1608#0 CCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGCGAGGGTGTTGTTCG 420 consensus_1608#1 CCAGGCACCTCATGCCCGACGCTGACGTCGACGAGCCGGCGACCGTGAGGGTGTTGTTCG 87 ********************************************* ************** consensus_1608#0 AGCAGGAGGAGAAGGCGGCGAAGCAGCATCTCCCTCCCTCACGCCCGCCTGCGGTGTGGG 480 consensus_1608#1 AGCAGGAGGATTTGGCGGCGAAGCAGCATCTCTCTCCCTCACGCCCGCCTGCTGGGTGGG 147 ********** ******************* ******************* * ***** consensus_1608#0 GCAGCAAGGACTGGCGTGACCTCGGCGCCGTCACCCCTGTCCAGGATCAAGGCA-AGAAT 539 consensus_1608#1 GCAGCAAGGACTGACGTGACCTCTTAGCCCGTCCCCGTGTCCAGGATCAAGACAGAGAGT 207 ************* ********* *** *** ************** ** *** * consensus_1608#0 AATTGCA-ACAGCTGCTGGGCGTTCGCGGTGGTGGCGGCGACGGAGGGGCTGATCAAGAT 598 consensus_1608#1 AGTTGCATACAGCTGCTGTGCGTTCCAGGCGCAGACGTCGGAATACTGGCTAGTGTAGAC 267 * ***** ********** ****** ** * * ** ** * **** * *** consensus_1608#0 CGAGACCGGCAACGTGACGCCGTTG--TCGGCGCAGCAGGTGCTGGACTGCAC-CGGCGG 655 consensus_1608#1 CCCAAGCGGAGCTGAGCAGGCGTCAATTTGAGAGCCCTTTTGGTGGCCTCTACGCGTCGG 327 * * *** * * * *** * * * ** *** ** ** ** *** consensus_1608#0 GGACAACACGTGCAAGGGAGGCCACATCCACGAGGCCCTGCGCTACATCGCCAC-CGCCA 714 consensus_1608#1 CAATGAGAT-TGCGAGGGAGG--AGGAGCGCGAGCTCGCGCGGCGAAGCGATACGTACTT 384 * * * *** ******* * * **** * *** * ** ** * consensus_1608#0 GCGCCGGCGGCCGGCTGAGCACGGACAAGAGCTACCGGCCGTACGACGGGGAGAAGGGCA 774 consensus_1608#1 TCTGGGGGGGCCTGACGAGCGGTGAGGCATGCTACTCGGCGTCGCTTCCGCCGCGGAGAG 444 * ** **** * **** ** ***** * *** * * * * consensus_1608#0 CCTGCGCCGCCGGCTCCGGCTCCGCGTCG-TCCTCGTCCGTCGCCGTCGTCATCCGCG-G 832 consensus_1608#1 CGCGGGATCGTAGAGCCGATGGTGCGCAGGTCAGCGTGAGGATTTGGGGCATACTACGCG 504 * * * * *** *** * ** *** * * * * ** * consensus_1608#0 CGTGCAGAAGGTGACGCCGCACGACAAGGACGCGCTGCGCGCCGCCGTGGAGAGGCAGCC 892 consensus_1608#1 CAGGCTGGAGCGGGCGCTGTGTGGGATAGGCG-GCTAGGGCTTGAC-TGCTGGCGCAGGA 562 * ** * ** * *** * * * * ** *** * * * ** * **** consensus_1608#0 CGTGGCGGCGGACATGGACTCGAGCGACCCAGAGTTCAGGGGATTCAAGGGAGGACGCGT 952 consensus_1608#1 TGTTG------------------------------------------------------- 567 ** * consensus_1608#0 GTACCGCGGCAGCGCTGGCTGCGGGAAGAAGCGGAACCACGCGGTGGCGGTGGTCGGGTA 1012 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 CGGGACGGCGAGCGACGGCACGCCGTACTGGCTGCTCAAGAACTCGTGGGCCACCGACTG 1072 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 GGGGGAGAACGGCTACATGCGCATCGCCGTCGACGCCGACTGCGGCGTCTCCAGCCGCCC 1132 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 CGCCTACCCCTTCGTCTAATAACTAAGGATACCGTGCGTCGATCGCTGTCGCGTTTCCTT 1192 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 CCTCGTTTCGTACTAAGTTACCGTAATTTCGTCCATTATATTCGTATACATGCTTGAAAT 1252 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 TCGGAAGCATGTATATAAGAGTATATCGTAGAGTCAATAACCCATTTGTACTAAGCAAGT 1312 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 GTATGTATATGCATGCGTTGTATCCTTCTTTTTTCCTTGAATACATATCACA 1364 consensus_1608#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||