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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1613#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 753 fasta sequence
[ATGTTTCACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCATTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCCTAACAATCAAGCATTAACCCCAGGGGAGGGGTTCATGCTGATACAGGGCCAATTTGGACAAAAAGNNGACATCTAAAACAACTGATCGAGCCAGAATGCCACTTTCAAAATTTCGTCNGTGGNATCTATATTGNTNTTTAGCATAGGGCCACCGGCCTTCTGGATGAAGCNCAAACCCATTTTACCAGACCCCTAAAACTTTTTAAGNCCTGG]
[+] EMBL CA767471 [ATGTTTCACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCATTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCCTAACAATCAAGCATTAACCCCAGGGGAGGGGTTCATGCTGATACAGGGCCAATTTGGACAAAAAGNNGACATCTAAAACAACTGATCGAGCCAGAATGCCACTTTCAAAATTTCGTCNGTGGNATCTATATTGNTNTTTAGCATAGGGCCACCGGCCTTCTGGATGAAGCNCAAACCCATTTTACCAGACCCCTAAAACTTTTTAAGNCCTGG]
consensusID : consensus_1613#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence
[CAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCACTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCTAACAATCAA]
[+] EMBL CF324192 [CAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGTGTGTGTCCCCATTAAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTCATCCTTACCGGCTCATTCCCTCGCACTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGGCCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCCATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAGTGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGATGGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAACCAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGGCTATGGGCAAAAGTAACCCTAACAATCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1613#0 ATGTTTCACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAA 60
consensus_1613#1 ---------------------------------------------------------CAA 3
***
consensus_1613#0 TATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAG-------------- 106
consensus_1613#1 TATGGAGGGCCATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGTGTGTGTCCCCATT 63
**********************************************
consensus_1613#0 ------GCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTC 160
consensus_1613#1 AAACAGGCATGACTATGGCTCTCACAGCTCCTACTTTGCCGACTCCAACTCAGGCTGCTC 123
******************************************************
consensus_1613#0 ATCCTTACCGGCTCATTCCCTCGCATTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGG 220
consensus_1613#1 ATCCTTACCGGCTCATTCCCTCGCACTTTGCTGTGTCTGCTGCTCCAGAGCAACCCTTGG 183
************************* **********************************
consensus_1613#0 CCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCC 280
consensus_1613#1 CCTAACCATGGTCTCCTTTCTCATCGTCACTCTCATTTTTATTTCCCACATGTTGAGTCC 243
************************************************************
consensus_1613#0 ATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAG 340
consensus_1613#1 ATGCATCCATCTCTAACACCAGAAGGCACTATTGTTGACCTCATGCTCATCAGCTAAAAG 303
************************************************************
consensus_1613#0 TGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGAT 400
consensus_1613#1 TGCACACTCCATATCCCACATGGTCATGTGGTGATTGGAGATAAGCTTCAGCCCCAGGAT 363
************************************************************
consensus_1613#0 GGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAAC 460
consensus_1613#1 GGGCTCAAAGCTTAATGCCCCCATGGATGGGGCTGTACTAACAGAGAAGCACAAACCAAC 423
************************************************************
consensus_1613#0 CAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGG 520
consensus_1613#1 CAATTTAACAACAGTCCAAGGAAGGACTTCATGGATTAATTTCAACCCTAGCAGAGAAGG 483
************************************************************
consensus_1613#0 CTATGGGCAAAAGTAACCCCTAACAATCAAGCATTAACCCCAGGGGAGGGGTTCATGCTG 580
consensus_1613#1 CTATGGGCAAAAGTAACCC-TAACAATCAA------------------------------ 512
******************* **********
consensus_1613#0 ATACAGGGCCAATTTGGACAAAAAGNNGACATCTAAAACAACTGATCGAGCCAGAATGCC 640
consensus_1613#1 ------------------------------------------------------------
consensus_1613#0 ACTTTCAAAATTTCGTCNGTGGNATCTATATTGNTNTTTAGCATAGGGCCACCGGCCTTC 700
consensus_1613#1 ------------------------------------------------------------
consensus_1613#0 TGGATGAAGCNCAAACCCATTTTACCAGACCCCTAAAACTTTTTAAGNCCTGG 753
consensus_1613#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||