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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 673 fasta sequence
[CCACGACTACTTGAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT-GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA-CGGAGAAGCTCGGCGT-CCGTGTGGAGCGCAACCCG-CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG-CGAG-T-GG---CCCAAG-TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC-TCGGCCAAGGAGACGTGCTACCTGC-TGC-AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC-T-GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU162098 [CCACGACTACTTGAGGATGGCGAGCCCAACAACAATGGTGGGAGTNGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTNCGGGTNCGGGTGCGGGCGTCGGCGTCGGAGGCGATNGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAATCCCGCCTCNCCGAGCTCGGCGTCCG CGAG T AG CCCAAG TAGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGgc ]
[+] EMBL AU162099 [ CACGACTACTTGAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCA NTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGNGTCGGNGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCNTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGNGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAA ]
[+] EMBL AK062427 [ CGACTACTTGAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGA ]
[+] EMBL OSC888 [ GACTACTTNAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGNGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCNACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGNGTNCGGGNGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTNGAGCGCAACCCGTCCTGAGTCCCtgctnt ]
[+] EMBL AU065915 [ CTTGAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGNGCATCTCCACACNACCACCACCGGCCGCCTCANCTGGGCCTGTNCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGNGTNCGNNTGCGNGNGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTTTGGAGCGCAACCCG NCCGATTCCCGCCTCTCCNAGCTCGGCGTCCG CAAG T GG CCCAAG TGGGGTTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGCAAGGNGAAGGTGAAGGTt ]
[+] EMBL OSS15808A [ GAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTTTGGAGCGCAACCCG CCCGANTCCCGCCTCTCCGAGCTCGGCGTCCG CAAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGA ]
[+] EMBL OSS15504A [ GAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTTTGGAGCGCAACCCG CCCGANTCCCGCCTCTCCGAGCTCGGCGTCCG CAAN T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TNC AGGGGAAGGTGAAGGTGTTCCCGGAC ]
[+] EMBL AU198242 [ GAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCG ]
[+] EMBL AK119720 [ TGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCAGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGA ]
[+] EMBL CA763293 [ CGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTTTTTTGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C74000 [ CCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG TNTG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTACTTCGGCCAAGGAGACGTGCTANCTTCTTGCAAGGGGAAGGTTAAGGTNTTCCCGGACGGCGCCGCCGAAGATTTCGTGGAGATCGCGGCGGGGGACCTT GTTGGTNTTTCCCAAAGGGATTAGNTTCAACTTGGACGTTGCC ]
[+] EMBL OS0736A [ GCGCATCTCCACACNACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGn ]
[+] EMBL OS1285A [ GCGCATCTCCACACNACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T NG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGA C T GGTGGTGTTCCCaa ]
[+] EMBL AU077498 [ CGNATCTCAACACCACCACCACCGGCCGCCTCA NTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGNGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGNTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAA ]
[+] EMBL AU077499 [ GCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTNCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCG GGTNNGC GTGCGGGTGCGGGTNCGGGTNCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCTN CCGTNTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CTAG T TG CCCAAG TNGGGGTNCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGT AAGGTGTTCCCGGACGGCGCC GCGAGGATTTCGTTGAGATCGCGGCGGGGGACC TNGGTTGTGTTTCC ]
[+] EMBL OSC02641 [ CCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTTCCGGACGNAGNCGGCGAGGAT ]
[+] EMBL BI796710 [ tCGGGT C GGTTC GGT CGGGCGTCGGCGTCGGA GCGAT GCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCC CCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TC GCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTACCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGC GCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTTAAAAA ]
[+] EMBL BI800318 [ cCGGTTCCGGGCGTCGGCTTCGGAGCCGATGGCGACCGGAGAAGCTCGGCGTCCCGTGTGGAGCCCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCGCCGAGTT GGCCCCCCAAGTTGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTACCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGC AATGAAATAAAACTTGATTAGTGGATTAAAAAA ]
[+] EMBL AU071196 [ CGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTTTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAA ]
[-] EMBL CF324611 [ CGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAAAAAA ]
[-] EMBL CF325215 [ CG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTAATAGTAACTTAGCTCGTACTATTAAGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU057511 [ CGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAAAAA ]
consensusID : consensus_16139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 659 fasta sequence
[GAGTTCGACCNACGCGTCCGGCAACTTCGGCGCATTTCCACACACCACCACCGGCCGCCTCAGTGCGCTTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGNTGGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGACGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCTCGGCGTCC-GCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAG-TTCCCGTGGACGTACTCGGCCAAGGAGA-CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGAC-GGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTC-GTGCTCTTATGC-GTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAATGATGGGATTAGTGGTAAAAAATGCTCTAAAAAAAAAAA]
[+] EMBL AU093181 [GAGTTCGACCNACGCGTCCGGCAACTTCGGCGCATTTCCACACACCACCACCGGCCGCCTCAGTGCGCTTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGNTGGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGACGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCTCGGCGTCC GCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAG TTCCCGTGGACGTACTCGGCCAAGGAGA CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGAC GGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTC GTGCTCTTATGC GTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAaaa ]
[+] EMBL AU029301 [ GCGTCGGAGGCGATGGCGACGGAGAAGCTCGGCNTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCTCGGCGTCC GCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAG TTCCCGTGGACGTACTCGGCCAAGGAGA CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGAC GGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTC GTGCTCTTATGC GTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAATGATGGGATTAGTGGTAAAAAA ]
[+] EMBL AU198110 [ CGCAACCCGCCCGAGTNCCGCCTCTCCGAGCTCGGCGTCC GCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAG TTNCCGTGGACGTACTCGGCCAAGGAGA CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGAC GGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTNTACTAGTAACTTAGCTCNGTGCTNTTATGCAGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAATGAaaaa ]
[-] EMBL CF324618 [ CTCTCCGAGCTCGGCGTCC GCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAG TTCCCGTGGACGTACTCGGCCAAGGAGA CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGAC GGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTC GTGCTCTTATGC GTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAATGATGGGATTAGTGGTATTTTTTGCTCTAAAAAAAAAAA]
[+] EMBL AU163100 [ GCGTCCNGCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAGTTTCCCGTGGACGTACTCGGCCAAGGAGACCGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGACTGGCGCCGGCGAGGATTTCGTGGAGATCGC GCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTC GTGCTCTTATGC GTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAA ]
consensusID : consensus_16139#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[CCCGAGTNCCCGGCCTTTTCCGNGCTCGGCGTCCGGCGAAGTTGGCCCAAAGTNGGGGGTTGCGAAGAAGANGCAAAGTTTCCCGTTGGACGTANTCCGGCCAAAGGAAGAACGTTGCTACCTTGCTTGCAAGGGGAAAGGTGAAAGGTGTTCCCGGTAACGGCGNCCCGGCGAGGATTTCGTGGAGATCNCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAA]
[+] EMBL AU162092 [CCCGAGTNCCCGGCCTTTTCCGNGCTCGGCGTCCGGCGAAGTTGGCCCAAAGTNGGGGGTTGCGAAGAAGANGCAAAGTTTCCCGTTGGACGTANTCCGGCCAAAGGAAGAACGTTGCTACCTTGCTTGCAAGGGGAAAGGTGAAAGGTGTTCCCGGTAACGGCGNCCCGGCGAGGATTTCGTGGAGATCNCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAA]
consensusID : consensus_16139#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[CGAGCTCGTCMATTBCGGGCASGARAYCAATGGTGGGAGTGGCAACCTYKKBCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGTGGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGACGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCGGAGTRGCCCAAGTRGGGGTGCGARAAGAGCAADTTCCCGTGGACGTACTCGGCCAAGGAGACGTKCTACCTKCTGAAGGGGAAGGTGAAGGTTTTCCCGACGGCGCCGGCGAGGWTTTYGTGGAGAT]
[+] EMBL AA754361 [CGAGCTCGTCMATTBCGGGCASGARAYCAATGGTGGGAGTGGCAACCTYKKBCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGTGGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGACGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCGGAGTRGCCCAAGTRGGGGTGCGARAAGAGCAADTTCCCGTGGACGTACTCGGCCAAGGAGACGTKCTACCTKCTGAAGGGGAAGGTGAAGGTTTTCCCGACGGCGCCGGCGAGGWTTTYGTGGAGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16139#0 ------------------------------------------------------------
consensus_16139#3 ------------------------------------------------------------
consensus_16139#1 GAGTTCGACCNACGCGTCCGGCAACTTCGGCGCATTTCCACACACCACCACCGGCCGCCT 60
consensus_16139#2 ------------------------------------------------------------
consensus_16139#0 ------------------------------------------------------------
consensus_16139#3 ------------------------------------------------------------
consensus_16139#1 CAGTGCGCTTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGNTGGCGGTG 120
consensus_16139#2 ------------------------------------------------------------
consensus_16139#0 ------------------------------------------------------------
consensus_16139#3 ------------------------------------------------------------
consensus_16139#1 CGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGACGGAGAAGCTCGGC 180
consensus_16139#2 ------------------------------------------------------------
consensus_16139#0 --------------------------------------CCACGACTACTTGAGGATGGCG 22
consensus_16139#3 -----------------------------------------CGA--GCTCGTCMATTBCG 17
consensus_16139#1 GTCCGTGTGGAGCGCAACCCGCCCGAGTCCCG---CCTCTCCGA--GCTCGGCGTCCG-C 234
consensus_16139#2 ---------------------CCCGAGTNCCCGGCCTTTTCCGN--GCTCGGCGTCCGGC 37
** ** *
consensus_16139#0 AGCCCAACAACAATGGTGGGAGTGGCAACCTCGGC-GCA----TCTCCACACCACCACCA 77
consensus_16139#3 GGCASGARAYCAATGGTGGGAGTGGCAACCTYKKBCGCA----TCTCCACACCACCACCA 73
consensus_16139#1 GAG--TGGCCCAA-GTGGGGGTGCGAGAAGAGCAA-G------TTCCCGT-GGACGTACT 283
consensus_16139#2 GAAGTTGGCCCAAAGTNGGGGGTTGCGAAGAAGAN-GCAAAGTTTCCCGTTGGACGTANT 96
*** * *** * * * * ** **
consensus_16139#0 CCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCG 137
consensus_16139#3 CCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCG 133
consensus_16139#1 C-GGCCAAGGAGACG----TGCTACCTG--CTGCAGGGG----AAGGTGAA-GGTGTTCC 331
consensus_16139#2 CCGGCCAAAGGAAGAACGTTGCTACCTTGCTTGCAAGGGGA--AAGGTGAAAGGTGTTCC 154
* **** * * * *** **** * * * **
consensus_16139#0 CGGTGGCGGTGCG--GGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA- 194
consensus_16139#3 CGGTGGCGGTGCG--GGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA- 190
consensus_16139#1 CGG--ACGGCGCC--GGCGAGGATTTCG-TGGAGATCGCGGCGGGGGACCTGGTGGTGTT 386
consensus_16139#2 CGGTAACGGCGNCCCGGCGAGGATTTCG-TGGAGATCNCGGCGGGGGACCTGGTGGTGTT 213
*** *** * ** * ** * * ** * ***** *** * *** *
consensus_16139#0 --CGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCT 252
consensus_16139#3 --CGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCT 248
consensus_16139#1 CCCCAAGGGGATGAGC-TGCACCTGGGACGTCG-----CCGAGGC---CGTCGACAAGCA 437
consensus_16139#2 CCCCAAGGGGATGAGC-TGCACCTGGGACGTCG-----CCGAGGC---CGTCGACAAGCA 264
* ** * * ** * * *** ** ***** * * ** * ***
consensus_16139#0 CGGCGTCCGCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTACTC 312
consensus_16139#3 CGGCGTCCG-GAGTRGCCCAAGTRGGGGTGCGARAAGAGCAADTTCCCGTGGACGTACTC 307
consensus_16139#1 CTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATG-ACAT 496
consensus_16139#2 CTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATG-ACAT 323
* * **** * * ** * * * *** * * **
consensus_16139#0 GGCCAAGG-----AGACGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGACGGC 367
consensus_16139#3 GGCCAAGG-----AGACGTKCTACCTKCTGAAGGGGAAGGTGAAGGTTTTCCCG-ACGGC 361
consensus_16139#1 GGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTT 556
consensus_16139#2 GGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTT 383
*** * ** * *** ** ** * * * ** ** **
consensus_16139#0 GCCGGCGA-GGATTTCGTGGAG-ATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGA 425
consensus_16139#3 GCCGGCGA-GGWTTTYGTGGAG-AT----------------------------------- 384
consensus_16139#1 ATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATT 616
consensus_16139#2 ATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATT 443
** * * * ***** **
consensus_16139#0 TGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTT 485
consensus_16139#3 ------------------------------------------------------------
consensus_16139#1 AAAATGATGGGATTAGTGGTAAAAAATGCTCTAAAAAAAAAAA----------------- 659
consensus_16139#2 AAAAAAAAAAAAAA---------------------------------------------- 457
consensus_16139#0 GGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGC 545
consensus_16139#3 ------------------------------------------------------------
consensus_16139#1 ------------------------------------------------------------
consensus_16139#2 ------------------------------------------------------------
consensus_16139#0 TATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGA 605
consensus_16139#3 ------------------------------------------------------------
consensus_16139#1 ------------------------------------------------------------
consensus_16139#2 ------------------------------------------------------------
consensus_16139#0 TCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAAAAAAAAA 665
consensus_16139#3 ------------------------------------------------------------
consensus_16139#1 ------------------------------------------------------------
consensus_16139#2 ------------------------------------------------------------
consensus_16139#0 AAAAAAAA 673
consensus_16139#3 --------
consensus_16139#1 --------
consensus_16139#2 --------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||