These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 22 consensus length = 673 fasta sequence [CCACGACTACTTGAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT-GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA-CGGAGAAGCTCGGCGT-CCGTGTGGAGCGCAACCCG-CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG-CGAG-T-GG---CCCAAG-TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC-TCGGCCAAGGAGACGTGCTACCTGC-TGC-AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC-T-GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU162098 [CCACGACTACTTGAGGATGGCGAGCCCAACAACAATGGTGGGAGTNGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTNCGGGTNCGGGTGCGGGCGTCGGCGTCGGAGGCGATNGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAATCCCGCCTCNCCGAGCTCGGCGTCCG CGAG T AG CCCAAG TAGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGgc ] [+] EMBL AU162099 [ CACGACTACTTGAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCA NTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGNGTCGGNGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCNTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGNGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAA ] [+] EMBL AK062427 [ CGACTACTTGAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGA ] [+] EMBL OSC888 [ GACTACTTNAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGNGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCNACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGNGTNCGGGNGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTNGAGCGCAACCCGTCCTGAGTCCCtgctnt ] [+] EMBL AU065915 [ CTTGAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGNGCATCTCCACACNACCACCACCGGCCGCCTCANCTGGGCCTGTNCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGNGTNCGNNTGCGNGNGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTTTGGAGCGCAACCCG NCCGATTCCCGCCTCTCCNAGCTCGGCGTCCG CAAG T GG CCCAAG TGGGGTTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGCAAGGNGAAGGTGAAGGTt ] [+] EMBL OSS15808A [ GAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTTTGGAGCGCAACCCG CCCGANTCCCGCCTCTCCGAGCTCGGCGTCCG CAAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGA ] [+] EMBL OSS15504A [ GAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTTTGGAGCGCAACCCG CCCGANTCCCGCCTCTCCGAGCTCGGCGTCCG CAAN T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TNC AGGGGAAGGTGAAGGTGTTCCCGGAC ] [+] EMBL AU198242 [ GAGGATGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCG ] [+] EMBL AK119720 [ TGGCGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCAGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGA ] [+] EMBL CA763293 [ CGAGCCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTTTTTTGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C74000 [ CCCAACAACAATGGTGGGAGTGGCAACCTCGGCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG TNTG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTACTTCGGCCAAGGAGACGTGCTANCTTCTTGCAAGGGGAAGGTTAAGGTNTTCCCGGACGGCGCCGCCGAAGATTTCGTGGAGATCGCGGCGGGGGACCTT GTTGGTNTTTCCCAAAGGGATTAGNTTCAACTTGGACGTTGCC ] [+] EMBL OS0736A [ GCGCATCTCCACACNACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGn ] [+] EMBL OS1285A [ GCGCATCTCCACACNACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T NG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGA C T GGTGGTGTTCCCaa ] [+] EMBL AU077498 [ CGNATCTCAACACCACCACCACCGGCCGCCTCA NTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGNGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGNTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAA ] [+] EMBL AU077499 [ GCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTNCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCG GGTNNGC GTGCGGGTGCGGGTNCGGGTNCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCTN CCGTNTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CTAG T TG CCCAAG TNGGGGTNCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGT AAGGTGTTCCCGGACGGCGCC GCGAGGATTTCGTTGAGATCGCGGCGGGGGACC TNGGTTGTGTTTCC ] [+] EMBL OSC02641 [ CCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGT GGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTTCCGGACGNAGNCGGCGAGGAT ] [+] EMBL BI796710 [ tCGGGT C GGTTC GGT CGGGCGTCGGCGTCGGA GCGAT GCGA CGGAGAAGCTCGGCGT CCGTGTGGAGCGCAACCCG CCCGAGTCCC CCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TC GCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTACCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGC GCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTTAAAAA ] [+] EMBL BI800318 [ cCGGTTCCGGGCGTCGGCTTCGGAGCCGATGGCGACCGGAGAAGCTCGGCGTCCCGTGTGGAGCCCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCGCCGAGTT GGCCCCCCAAGTTGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTACCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGC AATGAAATAAAACTTGATTAGTGGATTAAAAAA ] [+] EMBL AU071196 [ CGGCGTCGGAGGCGATGGCGA CGGAGAAGCTCGGCGT CCGTTTGGAGCGCAACCCG CCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAA ] [-] EMBL CF324611 [ CGTCCG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAAAAAA ] [-] EMBL CF325215 [ CG CGAG T GG CCCAAG TGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTAATAGTAACTTAGCTCGTACTATTAAGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAAAAAA ] [+] EMBL AU057511 [ CGTGGACGTAC TCGGCCAAGGAGACGTGCTACCTGC TGC AGGGGAAGGTGAAGGTGTTCCCGGACGGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACC T GGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAAAAA ] consensusID : consensus_16139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 659 fasta sequence [GAGTTCGACCNACGCGTCCGGCAACTTCGGCGCATTTCCACACACCACCACCGGCCGCCTCAGTGCGCTTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGNTGGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGACGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCTCGGCGTCC-GCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAG-TTCCCGTGGACGTACTCGGCCAAGGAGA-CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGAC-GGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTC-GTGCTCTTATGC-GTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAATGATGGGATTAGTGGTAAAAAATGCTCTAAAAAAAAAAA] [+] EMBL AU093181 [GAGTTCGACCNACGCGTCCGGCAACTTCGGCGCATTTCCACACACCACCACCGGCCGCCTCAGTGCGCTTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGNTGGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGACGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCTCGGCGTCC GCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAG TTCCCGTGGACGTACTCGGCCAAGGAGA CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGAC GGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTC GTGCTCTTATGC GTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAaaa ] [+] EMBL AU029301 [ GCGTCGGAGGCGATGGCGACGGAGAAGCTCGGCNTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCTCGGCGTCC GCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAG TTCCCGTGGACGTACTCGGCCAAGGAGA CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGAC GGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTC GTGCTCTTATGC GTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAATGATGGGATTAGTGGTAAAAAA ] [+] EMBL AU198110 [ CGCAACCCGCCCGAGTNCCGCCTCTCCGAGCTCGGCGTCC GCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAG TTNCCGTGGACGTACTCGGCCAAGGAGA CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGAC GGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTNTACTAGTAACTTAGCTCNGTGCTNTTATGCAGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAATGAaaaa ] [-] EMBL CF324618 [ CTCTCCGAGCTCGGCGTCC GCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAG TTCCCGTGGACGTACTCGGCCAAGGAGA CGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGAC GGCGCCGGCGAGGATTTCGTGGAGATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTC GTGCTCTTATGC GTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAATGATGGGATTAGTGGTATTTTTTGCTCTAAAAAAAAAAA] [+] EMBL AU163100 [ GCGTCCNGCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAGTTTCCCGTGGACGTACTCGGCCAAGGAGACCGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGACTGGCGCCGGCGAGGATTTCGTGGAGATCGC GCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTC GTGCTCTTATGC GTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAA ] consensusID : consensus_16139#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [CCCGAGTNCCCGGCCTTTTCCGNGCTCGGCGTCCGGCGAAGTTGGCCCAAAGTNGGGGGTTGCGAAGAAGANGCAAAGTTTCCCGTTGGACGTANTCCGGCCAAAGGAAGAACGTTGCTACCTTGCTTGCAAGGGGAAAGGTGAAAGGTGTTCCCGGTAACGGCGNCCCGGCGAGGATTTCGTGGAGATCNCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAA] [+] EMBL AU162092 [CCCGAGTNCCCGGCCTTTTCCGNGCTCGGCGTCCGGCGAAGTTGGCCCAAAGTNGGGGGTTGCGAAGAAGANGCAAAGTTTCCCGTTGGACGTANTCCGGCCAAAGGAAGAACGTTGCTACCTTGCTTGCAAGGGGAAAGGTGAAAGGTGTTCCCGGTAACGGCGNCCCGGCGAGGATTTCGTGGAGATCNCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGATGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAA] consensusID : consensus_16139#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [CGAGCTCGTCMATTBCGGGCASGARAYCAATGGTGGGAGTGGCAACCTYKKBCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGTGGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGACGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCGGAGTRGCCCAAGTRGGGGTGCGARAAGAGCAADTTCCCGTGGACGTACTCGGCCAAGGAGACGTKCTACCTKCTGAAGGGGAAGGTGAAGGTTTTCCCGACGGCGCCGGCGAGGWTTTYGTGGAGAT] [+] EMBL AA754361 [CGAGCTCGTCMATTBCGGGCASGARAYCAATGGTGGGAGTGGCAACCTYKKBCGCATCTCCACACCACCACCACCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGGTGGCGGTGCGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGACGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCTCGGCGTCCGGAGTRGCCCAAGTRGGGGTGCGARAAGAGCAADTTCCCGTGGACGTACTCGGCCAAGGAGACGTKCTACCTKCTGAAGGGGAAGGTGAAGGTTTTCCCGACGGCGCCGGCGAGGWTTTYGTGGAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16139#0 ------------------------------------------------------------ consensus_16139#3 ------------------------------------------------------------ consensus_16139#1 GAGTTCGACCNACGCGTCCGGCAACTTCGGCGCATTTCCACACACCACCACCGGCCGCCT 60 consensus_16139#2 ------------------------------------------------------------ consensus_16139#0 ------------------------------------------------------------ consensus_16139#3 ------------------------------------------------------------ consensus_16139#1 CAGTGCGCTTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCGCGNTGGCGGTG 120 consensus_16139#2 ------------------------------------------------------------ consensus_16139#0 ------------------------------------------------------------ consensus_16139#3 ------------------------------------------------------------ consensus_16139#1 CGGGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGACGGAGAAGCTCGGC 180 consensus_16139#2 ------------------------------------------------------------ consensus_16139#0 --------------------------------------CCACGACTACTTGAGGATGGCG 22 consensus_16139#3 -----------------------------------------CGA--GCTCGTCMATTBCG 17 consensus_16139#1 GTCCGTGTGGAGCGCAACCCGCCCGAGTCCCG---CCTCTCCGA--GCTCGGCGTCCG-C 234 consensus_16139#2 ---------------------CCCGAGTNCCCGGCCTTTTCCGN--GCTCGGCGTCCGGC 37 ** ** * consensus_16139#0 AGCCCAACAACAATGGTGGGAGTGGCAACCTCGGC-GCA----TCTCCACACCACCACCA 77 consensus_16139#3 GGCASGARAYCAATGGTGGGAGTGGCAACCTYKKBCGCA----TCTCCACACCACCACCA 73 consensus_16139#1 GAG--TGGCCCAA-GTGGGGGTGCGAGAAGAGCAA-G------TTCCCGT-GGACGTACT 283 consensus_16139#2 GAAGTTGGCCCAAAGTNGGGGGTTGCGAAGAAGAN-GCAAAGTTTCCCGTTGGACGTANT 96 *** * *** * * * * ** ** consensus_16139#0 CCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCG 137 consensus_16139#3 CCGGCCGCCTCAGCTGCGCCTGTGCACCACCGACGAGGGGAACAAGGCGGCGGCGGCTCG 133 consensus_16139#1 C-GGCCAAGGAGACG----TGCTACCTG--CTGCAGGGG----AAGGTGAA-GGTGTTCC 331 consensus_16139#2 CCGGCCAAAGGAAGAACGTTGCTACCTTGCTTGCAAGGGGA--AAGGTGAAAGGTGTTCC 154 * **** * * * *** **** * * * ** consensus_16139#0 CGGTGGCGGTGCG--GGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA- 194 consensus_16139#3 CGGTGGCGGTGCG--GGTGCGGGTGCGGGTGCGGGCGTCGGCGTCGGAGGCGATGGCGA- 190 consensus_16139#1 CGG--ACGGCGCC--GGCGAGGATTTCG-TGGAGATCGCGGCGGGGGACCTGGTGGTGTT 386 consensus_16139#2 CGGTAACGGCGNCCCGGCGAGGATTTCG-TGGAGATCNCGGCGGGGGACCTGGTGGTGTT 213 *** *** * ** * ** * * ** * ***** *** * *** * consensus_16139#0 --CGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCT 252 consensus_16139#3 --CGGAGAAGCTCGGCGTCCGTGTGGAGCGCAACCCGCCCGAGTCCCGCCTCTCCGAGCT 248 consensus_16139#1 CCCCAAGGGGATGAGC-TGCACCTGGGACGTCG-----CCGAGGC---CGTCGACAAGCA 437 consensus_16139#2 CCCCAAGGGGATGAGC-TGCACCTGGGACGTCG-----CCGAGGC---CGTCGACAAGCA 264 * ** * * ** * * *** ** ***** * * ** * *** consensus_16139#0 CGGCGTCCGCGAGTGGCCCAAGTGGGGGTGCGAGAAGAGCAAGTTCCCGTGGACGTACTC 312 consensus_16139#3 CGGCGTCCG-GAGTRGCCCAAGTRGGGGTGCGARAAGAGCAADTTCCCGTGGACGTACTC 307 consensus_16139#1 CTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATG-ACAT 496 consensus_16139#2 CTACAAGTTCGAGTAGATTTGGGGATTTGGCACGCCAATCGATTTCAGCCATATG-ACAT 323 * * **** * * ** * * * *** * * ** consensus_16139#0 GGCCAAGG-----AGACGTGCTACCTGCTGCAGGGGAAGGTGAAGGTGTTCCCGGACGGC 367 consensus_16139#3 GGCCAAGG-----AGACGTKCTACCTKCTGAAGGGGAAGGTGAAGGTTTTCCCG-ACGGC 361 consensus_16139#1 GGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTT 556 consensus_16139#2 GGCGATGGTTTGTGCTTCTGCTATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTT 383 *** * ** * *** ** ** * * * ** ** ** consensus_16139#0 GCCGGCGA-GGATTTCGTGGAG-ATCGCGGCGGGGGACCTGGTGGTGTTCCCCAAGGGGA 425 consensus_16139#3 GCCGGCGA-GGWTTTYGTGGAG-AT----------------------------------- 384 consensus_16139#1 ATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATT 616 consensus_16139#2 ATATGCTCCAGTTGTTGTGGATCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATT 443 ** * * * ***** ** consensus_16139#0 TGAGCTGCACCTGGGACGTCGCCGAGGCCGTCGACAAGCACTACAAGTTCGAGTAGATTT 485 consensus_16139#3 ------------------------------------------------------------ consensus_16139#1 AAAATGATGGGATTAGTGGTAAAAAATGCTCTAAAAAAAAAAA----------------- 659 consensus_16139#2 AAAAAAAAAAAAAA---------------------------------------------- 457 consensus_16139#0 GGGGATTTGGCACGCCAATCGATTTCAGCCATATGACATGGCGATGGTTTGTGCTTCTGC 545 consensus_16139#3 ------------------------------------------------------------ consensus_16139#1 ------------------------------------------------------------ consensus_16139#2 ------------------------------------------------------------ consensus_16139#0 TATCTTCTACTAGTAACTTAGCTCGTGCTCTTATGCGTTATATGCTCCAGTTGTTGTGGA 605 consensus_16139#3 ------------------------------------------------------------ consensus_16139#1 ------------------------------------------------------------ consensus_16139#2 ------------------------------------------------------------ consensus_16139#0 TCATCTCCTGCAAATGAAATAAAACTTGATTAGTGGATTAAAAAAAAAAAAAAAAAAAAA 665 consensus_16139#3 ------------------------------------------------------------ consensus_16139#1 ------------------------------------------------------------ consensus_16139#2 ------------------------------------------------------------ consensus_16139#0 AAAAAAAA 673 consensus_16139#3 -------- consensus_16139#1 -------- consensus_16139#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||