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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 732 fasta sequence
[CGCGGGACTGGAGCCGTGCTCCGGCGGCTCTGGGCACGGGGAGCCCGACGTACGAGGAGCTGACGCCGTCGCGCCATCGCCCCGAGCCGAGTCGGCGGCGGGGAGGACGATCTGATGGAGGCGTTCAAGGTGTTCGACGCCGACGGCGACTGGCCGCATCACCGCCGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT-CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG-AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT-AGC-CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC-AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC-CTAACGTTGCTGTG--TGAA-TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA]
[+] EMBL BQ907086 [CGCGGGACTGGAGCCGTGCTCCGGCGGCTCTGGGCACGGGGAGCCCGACGTACGAGGAGCTGACGCCGTCGCGCCATCGCCCCGAGCCGAGTCGGCGGCGGGGAGGACGATCTGATGGAGGCGTTCAAGGTGTTCGACGCCGACGGCGACTGGCCGCATCACCGCCGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTaaaaaa ]
[+] EMBL BI809582 [ GACGGCGAC GGCCGCATCACCGCCGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCCAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCCAGATGAAGAGGGAATATTATTATT AGC CTAAACCC ACCTGTAAAATCC TTAAGAGAGAGTAATCCC AGGCGAATGCTTCGTTCTTTC ATTTTTC AAATTTTAATCCTCC ACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTGAATGAA aaa ]
[+] EMBL AK072758 [ CGAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTC ]
[-] EMBL CB684129 [ GAGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGGGGCTATAAAACATTCT ]
[+] EMBL AU198171 [ AGGAGCTCCGCGGCGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAAaaa ]
[+] EMBL BI807656 [ ATCCTC GC GCGAC GCGACGGCT CAGCCTCGACGACTTCC CCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCCAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCC ACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCC ACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTaaaaaaaa ]
[+] EMBL AU161435 [ CTGCAGCCTCGACGACTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAAaaaa ]
[+] EMBL AU181875 [ CCTCGACGNCTGCCGCCGCATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCNCTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAAaaaaaa aa ]
[+] EMBL BI805427 [ CGAC GCTTCTTCGGGTTCCAGGACTTCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGAC GCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCC AAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATTCCCC CTNCNCCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGT CGAACTCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAAaa ]
[+] EMBL AU182719 [ TCGCCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTA A AAAAAAA ]
[+] EMBL AU197975 [ CCCGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA]
[+] EMBL AU197964 [ CGCATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA]
[+] EMBL AU057400 [ CGCATGATGATGGCCGCCACCGCCACCGCCACGGCGNCGGCGGACGNCCCGAGATCCGTGGTGATCNATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA]
[+] EMBL AU222570 [ CATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGAT CGTGGTGATCCATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTGTGCTTCAACTTTTTTTGGCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTC AAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGC CTAACGTTGCTGTG TGAA TCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTaaaaaa ]
[+] EMBL AU078667 [ GCGCGCACTAGACGATGG AAAAAAAGCCAGCACTACTAGATGCGCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAATATTATTATT AGC CTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAAT NTTCGTTCTTTCAAaaa ]
[+] EMBL BI809465 [ ATGAAGAGGGAATATTATTATT AGCACTAAACCCAACCTGT AAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTCAAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGCACTAACGTTGCTGTGAATGAAaaa ]
consensusID : consensus_16145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 486 fasta sequence
[ATCTCATCAACCTCTCCAAATCTCTCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC-GCGC-TGATGGCGAGGTCGAC-ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG-AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC-GGGGAGGACGAGCTGATGGAGGCGTTCAAGGTGTTTCGAACGCCGACGGCGAANGGGCCGCATTCACCGCCGAGGAGCTCCGCGGCG]
[+] EMBL AK058802 [ATCTCATCAACCTCTCCAAATCTCTCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGACCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC GGGGAGGACGAGCTGATGGAGGCGTTCAA ]
[+] EMBL C73948 [ TCCAAATCTCTCGATCNNCCATTCGAGCGAGATGAAGCTCTNCATCCAGTCATTCGNCCGCAAGCTCTNCCNGCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATNTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGNCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GNGC TGATNGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCT ]
[+] EMBL OSS13975A [ TCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGGCGCTTGATGGCGAAGTCGACAACCAAGGTCGGTNCTTCCC ]
[+] EMBL OSS13950A [ TCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TNATTGCGAAGTCGAC AACNAGGTCGGTGCTTCCCGCGGAGATCTNGCGGCGGGANTTTGAGGCCGTtc ]
[+] EMBL C72307 [ CGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAA CAGTTAGAGGGATGGTGGCATGTCCAAGAACGGGAGCTGCGTGAA CGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAN GCGC TGA ]
[+] EMBL BF430708 [ GATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC GGGGAGGACGAGCTGATGGAGGCGTTCAA ]
[+] EMBL AU161280 [ ATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCNGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGA ]
[+] EMBL AU032897 [ CCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAG AGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAG GGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACG C GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGNGAGTTGGAGGCCGTGCTCCGGCGNCTCGGGCACGTGGAGCCCGACGACGAGGAAGTTGGACGCCGT ]
[+] EMBL CA754271 [ GAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGC GGGGAGGACGAGCTGATGGAGGCGTTCAA ]
[+] EMBL AU057399 [ AGATGAAGCTCTCCATCCAGTCATTCGCCCGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAAGAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGAC GCGC TGATGGCGAGGTCGAC ACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGG AGCTGGACGCCGTCGCGGCCATCGCCGCCGAGGCCGAGGCGGGCGGCGGGGGAGGACGAGCTGATGGAGGCGTTCAAGGTGTTTCGAACGCCGACGGCGAANGGGCCGCATTCACCGCCGAGGAGCTCCGCGGCG]
consensusID : consensus_16145#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[CGGCGGATCGGCCCGAGAGTCGTGGGTTGAGTCCAGTGTCCGTCCGGTGTCCTCGTCTCAAAATAGATTCGGACGGTCCTGTTGATGCGTCGTCGTGAATGGTGGTGGTGCGTGTCAACGTGTTGTGTGTTGGCGCGCATCGTAGACCGTAGTGGAAAAAAAAGCCAGCACGTACGTAGAGTGCGCGTGCGTAAGTGTAAGGTACGTCGTACGTAAGTCCAAGATGAAGAGGGAAGTAGTTAGTGTAGTGTAGCCGTAAACCCAACCGTGGTAAAAGTCCAGTTAAGAGGAGAGGTAAGTCCCAGGCGAAGTGCGTGTCGGTGTCGTGTGTCAAGTGTGTGTGTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTAAAAA]
[+] EMBL BQ906973 [CGGCGGATCGGCCCGAGAGTCGTGGGTTGAGTCCAGTGTCCGTCCGGTGTCCTCGTCTCAAAATAGATTCGGACGGTCCTGTTGATGCGTCGTCGTGAATGGTGGTGGTGCGTGTCAACGTGTTGTGTGTTGGCGCGCATCGTAGACCGTAGTGGAAAAAAAAGCCAGCACGTACGTAGAGTGCGCGTGCGTAAGTGTAAGGTACGTCGTACGTAAGTCCAAGATGAAGAGGGAAGTAGTTAGTGTAGTGTAGCCGTAAACCCAACCGTGGTAAAAGTCCAGTTAAGAGGAGAGGTAAGTCCCAGGCGAAGTGCGTGTCGGTGTCGTGTGTCAAGTGTGTGTGTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTACTATAAAACATTCTTTAGATCTAAAAA]
consensusID : consensus_16145#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence
[GTCCCTTTAGGAGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAACAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATGGCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGATTATGAGCTGGACGCCGTCGCGGCCATCGCTGCCGAGGCCGAGGCGGCCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAA]
[+] EMBL CB660691 [GTCCCTTTAGGAGCAAGCTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGAGGGATGGTGGCATGTCCAACAACGGGAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAGGCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATGGCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCCGTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGATTATGAGCTGGACGCCGTCGCGGCCATCGCTGCCGAGGCCGAGGCGGCCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAA]
consensusID : consensus_16145#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence
[ATCCAAGATGAAGAGGGAATATTATTATTAGCCTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CF320895 [ATCCAAGATGAAGAGGGAATATTATTATTAGCCTAAACCCAACCTGTAAAATCCATTAAGAGAGAGTAATCCCAAGGCGAATGCTTCGTTCTTTCAATTTTTCAAATTTTAATCCTCCAACTTGGAGTTGGAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16145#2 ------------------------------------------------------------
consensus_16145#4 ------------------------------------------------------------
consensus_16145#0 CGCGGGACTGGAGCCGTGCTCCGGCGGCTCTGGGCACGGGGAGCCCGACGTACGAGGAGC 60
consensus_16145#1 ------------------------------------------------------------
consensus_16145#3 ------------------------------------------------------------
consensus_16145#2 ------------------------------------------------------------
consensus_16145#4 ------------------------------------------------------------
consensus_16145#0 TGACGCCGTCGCGCCATCGCCCCGAGCCGAGTCGGCGGCGGGGAGGACGATCTGATGGAG 120
consensus_16145#1 ------------------------------------------------------------
consensus_16145#3 ------------------------------------------------------------
consensus_16145#2 ------------------------------------------------------------
consensus_16145#4 ------------------------------------------------------------
consensus_16145#0 GCGTTCAAGGTGTTCGACGCCGACGGCGACTGGCCGCATCACCGCCGAGGAGCTCCGCGG 180
consensus_16145#1 ------------------------------------------------------------
consensus_16145#3 ------------------------------------------------------------
consensus_16145#2 ------------------------------------------------------------
consensus_16145#4 ------------------------------------------------------------
consensus_16145#0 CGTCATGGTCGCCATCCTCGGCGGCGACGGCGACGGCTGCAGCCTCGACGACTGCCGCCG 240
consensus_16145#1 ------------------------------------------------------------
consensus_16145#3 ------------------------------------------------------------
consensus_16145#2 ---------------------------------------------CGGCGGATCGGCCCG 15
consensus_16145#4 ------------------------------------------------------------
consensus_16145#0 CATGATCGGCGGCGTCGACGCCGACGGCGACGGCTTCGTCGGGTTCCAGGACTTCGCCCG 300
consensus_16145#1 ----------------------------------------------ATCTCATCAACCTC 14
consensus_16145#3 ------------------------------------------------------------
consensus_16145#2 AGAGTCGTGGGTTGAGTCCAGTGTCCGTCCGGTGTCCTCGTCTCAAAATAGATTCGGACG 75
consensus_16145#4 ------------------------------------------------------------
consensus_16145#0 CATGATGATGGCCGCCACCGCCACCGCCACGGCGACGGCGGACGGCCCGAGATCGTGGTG 360
consensus_16145#1 TCCAAATCTCTCGATCTCCCATTCGAGCGAGATGAAGCTCTCCATCCAGTCATTCGCCCG 74
consensus_16145#3 -----------------------------------------------GTCCCTTTAGGAG 13
consensus_16145#2 GTCCTGTTGATGCGTCGTCGTGAATGGTGGTGGTGCGTGTCAACGTGTTGTGTGTTGGCG 135
consensus_16145#4 ------------------------------------------------------------
consensus_16145#0 ATCC-ATTCCTCCGTTCCCGCCAAAAAGATCGGACGGCCGTGATGCGCTCTGATGTGGTG 419
consensus_16145#1 CAAG-CTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGA 133
consensus_16145#3 CAAG-CTCTCCCTCCCGTCGCCGAAGCGGACGTGGAGCAGCGGCGGCGGAAGCAGTAAGA 72
consensus_16145#2 CGCATCGTAGACCGTAGTGGAAAA--AAAAGCCAGCACGTACGTAGAGTGCGCGTGCGTA 193
consensus_16145#4 ------------------------------------------------------------
consensus_16145#0 TGCTTCAACTTTTTTTGGCGCGCACTAGACGATGGAAAAAAAGCCAGCACTACTAGATGC 479
consensus_16145#1 GGGATGGTGGCATGTCCAAGAACGG-GAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAG 192
consensus_16145#3 GGGATGGTGGCATGTCCAACAACGG-GAGCGGCGTGAAGCGGGCCATCTCCCGCAGCGAG 131
consensus_16145#2 AGTGTAAGGTACGTCGTACGTAAGTCCAAGATGAAGAGGGAAGTAGTTAGTGTAGTGTAG 253
consensus_16145#4 -----------------------ATCCAAGATGAAGAGGGAAT--ATTATTAT----TAG 31
consensus_16145#0 GCTGCTAATTAAGTACTCTACTAATCCAAGATGAAGAGGGAAT--ATTATTAT----TAG 533
consensus_16145#1 GCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATG 252
consensus_16145#3 GCGTCGTCGTTCGCGTCGGCGTCGTCGGAGTCGGAGTCGTCCTCGGACGACGCGCTGATG 191
** ** * ** * *
consensus_16145#2 CCGTAAACCCAACCGTGGTAAAAGTCCAGTTAAGAGGAGAGGTAAGTCCCAGGCGAAGT- 312
consensus_16145#4 CC-TAAACCCAACCT--GTAAAA-TCCA-TTAAGAGAGA--GTAATCCCAAGGCGAA--- 81
consensus_16145#0 CC-TAAACCCAACCT--GTAAAA-TCCA-TTAAGAGAGA--GTAATCCCAAGGCGAA--- 583
consensus_16145#1 GCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCC 312
consensus_16145#3 GCGAGGTCGACACCGAGGTCGGTGCTCCCCGCGGAGATCTCGCGGCGGGAGCTGGAGGCC 251
* * *** ** * *** * **
consensus_16145#2 GCGTGTCGGTGTCGTGTGTCAAGTGTGTGTGTCAAATTTTAATCCTCCAAC-TTGGAGTT 371
consensus_16145#4 -TGCTTCGTTCTT-----TCAATTTT-----TCAAATTTTAATCCTCCAAC-TTGGAGTT 129
consensus_16145#0 -TGCTTCGTTCTT-----TCAATTTT-----TCAAATTTTAATCCTCCAAC-TTGGAGTT 631
consensus_16145#1 GTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGACGAGGAGCTGGACGCCGTCGCGGCC 372
consensus_16145#3 GTGCTCCGGCGGCTCGGGCACGGGGAGCCCGACGATTATGAGCTGGACGCCGTCGCGGCC 311
* ** * * * * * * * *
consensus_16145#2 GGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTA 431
consensus_16145#4 GGAGCTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 189
consensus_16145#0 GGAGCTGTAAGCCTAACGTTGCTGTGTGAATCGGACTTGTATCTTGCTGCGATCGAGCTA 691
consensus_16145#1 ATCGCCGCCGAGGCCGAGGCGGGCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAAGGTG 432
consensus_16145#3 ATCGCTGCCGAGGCCGAGGCGGCCGGCGGGGAGGACGAGCTGATGGAGGCGTTCAA---- 367
** * * *
consensus_16145#2 CTATAAAACATTCTTTAGATCTAAAAA--------------------------- 458
consensus_16145#4 AAAAAAAAA--------------------------------------------- 198
consensus_16145#0 CTATAAAACATTCTTTAGATCTTATGGATTAAAAAAAAAAA------------- 732
consensus_16145#1 TTTCGAACGCCGACGGCGAANGGGCCGCATTCACCGCCGAGGAGCTCCGCGGCG 486
consensus_16145#3 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||