These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2131 fasta sequence [TCGTTACCAATTCCACCTTCACTCGACCACTCCAACAAAACATGGACATCTCTCACCTCCTCCTACGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCGCCTTCTCGCTCGACGATGCTCCCCATCACCATTGCACTGAAGCTGCAGCAACAACTCTTCCTCCACCACCACCACCACCATTCTCCTTCAAATTCGACTTCTCCAACACCTACACCTACCGCCTAGAAGACCTCCGATTCGAGGGCACGGCCGCCGTGCACGGCGCCACCGTCGACCTCACCTGCAACGTCGCCCAGTGCACGACGGGGCGCATGTCCTACGGCCGCGCTGTGCCACTCTGGGACAGAGCCACCAACGAGGTGGCCAGCTTCGCCACCGAGTTCGCCTTCAAGATCGTCACCCCGGACAACGTGGCCAGGGGAGACGGCATGGCCTTCTTCCTCTCCAGCTACCCCTCACGCGTCCCCCCCAACCCCAGCGGCCAGAGCTTCGGCCTCATCGCCGGCGACGCCGACCACGCCGGCGACGGCCCGGACCGGTTCATCGCCGTCGAGTTCGACACATACGATGACACCTTCGAACGGCCGAGGCCGGCCGGAGACCACATCGGCATCGATGTCAGCAGCGTCGCCGACTCGATTAACACGACGAGCTTGAACTTCAGCAGGAACGGGGCCATGAGGGCGTCCATCACCTTCGACAATGTCACCAGGATGCTGGTCGCCACCGTGCAGTTTACTGATCAGACTACTGCTTCGCGTGCTGCCCCTGTTCAGGTGAGTGCGAAACTTGGAGATCCCAGGGCGTTGCTGCCATCGGAGGTGGCCGTGGGATTTTCTACGGCGAACGGCGCAACATTCCAGCTCGATCAGATACTGTCATGGTCGTTCAACTCCACTCTTGCGTCTCCACATCCCGTAACCAAAGGTCATCACAAAAAGAAAGGGGCAGCAGGAAAGTTTGCGATTGTTGGAGCTCCCATATTTTTGCTTCTGGTGTGGTCTATCCTATCATGGTGGAAATGGAGAAGCTCAAGCCGCGACATTGACAAGAGAACTGGAGGTGTTAGGCAGTTCAAGTACAACGAGTTGGCTGCTGCAACGAATCAGTTCTCCTCTGAGAATAGGCTGATTGGAGCTGGTCCGTTCGGTGAAGGCTACAAGGGTTTCTTCAAGGAAATGGGCCGTCATGTTGCGATTAAGAAGATTTCGAAGGAGAGCAGATCAGAAGGAAGTAATAAGGACTTCTATGACGAAGTGAAAACCATCAGCAGTGCAAAGCACAAGAATCTCGTTGAACTTGTCGGTTGGTGCGTGAAGCGTAGATGGAACATGTTTGATTCCATGTGCTGGTGTAGGGAGAAGGCCCATACCATTTTCTTGGTGTATGAATTTGTGGATAACAGTAACCTCCGTGTTCACCTGCACGAGAAGGAGGCTGTGCTTCCATGGACAACGAGGTATAAAATAGTGAAGGACATTTGCGCAGCTCTGGTTCACCTCCACCATGAAAGACGTCCATTCGTCCTTCACAGAAATATCAAACCAAACAACATACTCCTGGACAAAGAGTTCAACGCCAAGCTAGCAGACTTCGGGCTGTCCAGAACTGCTGACAAGGTAGGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACGGGAAAGTTCAAGCGCAGCTCGGATGTCTACAGCTTTGGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAAGAGTAGTATTAGTCCTGCTCTACCAGCAGGATCAGGCGAAGAACTGCTGGACTTAGTTAATAAATGCTTGGATTAATACGAGCATAATTTTTTATTGTTGTGATTCCTGCAAGTTATTGTATCTTCTACATCCATTTATGTTTCTAATC] [+] EMBL AK102268 [TCGTTACCAATTCCACCTTCACTCGACCACTCCAACAAAACATGGACATCTCTCACCTCCTCCTACGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCGCCTTCTCGCTCGACGATGCTCCCCATCACCATTGCACTGAAGCTGCAGCAACAACTCTTCCTCCACCACCACCACCACCATTCTCCTTCAAATTCGACTTCTCCAACACCTACACCTACCGCCTAGAAGACCTCCGATTCGAGGGCACGGCCGCCGTGCACGGCGCCACCGTCGACCTCACCTGCAACGTCGCCCAGTGCACGACGGGGCGCATGTCCTACGGCCGCGCTGTGCCACTCTGGGACAGAGCCACCAACGAGGTGGCCAGCTTCGCCACCGAGTTCGCCTTCAAGATCGTCACCCCGGACAACGTGGCCAGGGGAGACGGCATGGCCTTCTTCCTCTCCAGCTACCCCTCACGCGTCCCCCCCAACCCCAGCGGCCAGAGCTTCGGCCTCATCGCCGGCGACGCCGACCACGCCGGCGACGGCCCGGACCGGTTCATCGCCGTCGAGTTCGACACATACGATGACACCTTCGAACGGCCGAGGCCGGCCGGAGACCACATCGGCATCGATGTCAGCAGCGTCGCCGACTCGATTAACACGACGAGCTTGAACTTCAGCAGGAACGGGGCCATGAGGGCGTCCATCACCTTCGACAATGTCACCAGGATGCTGGTCGCCACCGTGCAGTTTACTGATCAGACTACTGCTTCGCGTGCTGCCCCTGTTCAGGTGAGTGCGAAACTTGGAGATCCCAGGGCGTTGCTGCCATCGGAGGTGGCCGTGGGATTTTCTACGGCGAACGGCGCAACATTCCAGCTCGATCAGATACTGTCATGGTCGTTCAACTCCACTCTTGCGTCTCCACATCCCGTAACCAAAGGTCATCACAAAAAGAAAGGGGCAGCAGGAAAGTTTGCGATTGTTGGAGCTCCCATATTTTTGCTTCTGGTGTGGTCTATCCTATCATGGTGGAAATGGAGAAGCTCAAGCCGCGACATTGACAAGAGAACTGGAGGTGTTAGGCAGTTCAAGTACAACGAGTTGGCTGCTGCAACGAATCAGTTCTCCTCTGAGAATAGGCTGATTGGAGCTGGTCCGTTCGGTGAAGGCTACAAGGGTTTCTTCAAGGAAATGGGCCGTCATGTTGCGATTAAGAAGATTTCGAAGGAGAGCAGATCAGAAGGAAGTAATAAGGACTTCTATGACGAAGTGAAAACCATCAGCAGTGCAAAGCACAAGAATCTCGTTGAACTTGTCGGTTGGTGCGTGAAGCGTAGATGGAACATGTTTGATTCCATGTGCTGGTGTAGGGAGAAGGCCCATACCATTTTCTTGGTGTATGAATTTGTGGATAACAGTAACCTCCGTGTTCACCTGCACGAGAAGGAGGCTGTGCTTCCATGGACAACGAGGTATAAAATAGTGAAGGACATTTGCGCAGCTCTGGTTCACCTCCACCATGAAAGACGTCCATTCGTCCTTCACAGAAATATCAAACCAAACAACATACTCCTGGACAAAGAGTTCAACGCCAAGCTAGCAGACTTCGGGCTGTCCAGAACTGCTGACAAGGTAGGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACGGGAAAGTTCAAGCGCAGCTCGGATGTCTACAGCTTTGGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAAGAGTAGTATTAGTCCTGCTCTACCAGCAGGATCAGGCGAAGAACTGCTGGACTTAGTTAATAAATGCTTGGATTAATACGAGCATAATTTTTTATTGTTGTGATTCCTGCAAGTTATTGTATCTTCTACATCCATTTATGTTTCTAATC] consensusID : consensus_1618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence [CGAGGCTCGTCSVATYGGGCAGGGGGGAAAGTTCAAGCGCABTCGGATGTCTACAGCTTTRGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAAGAGTAGTATTAGTCCTGCTCTACCAGCAGGMTCAGGCGAAGAACTKCTGGACTTAGTTAATAAATGCTTGGGWTTAATACGVGCATA] [+] EMBL BE229381 [CGAGGCTCGTCSVATYGGGCAGGGGGGAAAGTTCAAGCGCABTCGGATGTCTACAGCTTTRGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAAGAGTAGTATTAGTCCTGCTCTACCAGCAGGMTCAGGCGAAGAACTKCTGGACTTAGTTAATAAATGCTTGGGWTTAATACGVGCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1618#0 TCGTTACCAATTCCACCTTCACTCGACCACTCCAACAAAACATGGACATCTCTCACCTCC 60 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TCCTACGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCGCCTTCTCGCTCGACGATGCTC 120 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 CCCATCACCATTGCACTGAAGCTGCAGCAACAACTCTTCCTCCACCACCACCACCACCAT 180 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TCTCCTTCAAATTCGACTTCTCCAACACCTACACCTACCGCCTAGAAGACCTCCGATTCG 240 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 AGGGCACGGCCGCCGTGCACGGCGCCACCGTCGACCTCACCTGCAACGTCGCCCAGTGCA 300 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 CGACGGGGCGCATGTCCTACGGCCGCGCTGTGCCACTCTGGGACAGAGCCACCAACGAGG 360 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TGGCCAGCTTCGCCACCGAGTTCGCCTTCAAGATCGTCACCCCGGACAACGTGGCCAGGG 420 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 GAGACGGCATGGCCTTCTTCCTCTCCAGCTACCCCTCACGCGTCCCCCCCAACCCCAGCG 480 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 GCCAGAGCTTCGGCCTCATCGCCGGCGACGCCGACCACGCCGGCGACGGCCCGGACCGGT 540 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TCATCGCCGTCGAGTTCGACACATACGATGACACCTTCGAACGGCCGAGGCCGGCCGGAG 600 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 ACCACATCGGCATCGATGTCAGCAGCGTCGCCGACTCGATTAACACGACGAGCTTGAACT 660 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TCAGCAGGAACGGGGCCATGAGGGCGTCCATCACCTTCGACAATGTCACCAGGATGCTGG 720 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TCGCCACCGTGCAGTTTACTGATCAGACTACTGCTTCGCGTGCTGCCCCTGTTCAGGTGA 780 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 GTGCGAAACTTGGAGATCCCAGGGCGTTGCTGCCATCGGAGGTGGCCGTGGGATTTTCTA 840 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 CGGCGAACGGCGCAACATTCCAGCTCGATCAGATACTGTCATGGTCGTTCAACTCCACTC 900 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TTGCGTCTCCACATCCCGTAACCAAAGGTCATCACAAAAAGAAAGGGGCAGCAGGAAAGT 960 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TTGCGATTGTTGGAGCTCCCATATTTTTGCTTCTGGTGTGGTCTATCCTATCATGGTGGA 1020 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 AATGGAGAAGCTCAAGCCGCGACATTGACAAGAGAACTGGAGGTGTTAGGCAGTTCAAGT 1080 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 ACAACGAGTTGGCTGCTGCAACGAATCAGTTCTCCTCTGAGAATAGGCTGATTGGAGCTG 1140 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 GTCCGTTCGGTGAAGGCTACAAGGGTTTCTTCAAGGAAATGGGCCGTCATGTTGCGATTA 1200 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 AGAAGATTTCGAAGGAGAGCAGATCAGAAGGAAGTAATAAGGACTTCTATGACGAAGTGA 1260 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 AAACCATCAGCAGTGCAAAGCACAAGAATCTCGTTGAACTTGTCGGTTGGTGCGTGAAGC 1320 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 GTAGATGGAACATGTTTGATTCCATGTGCTGGTGTAGGGAGAAGGCCCATACCATTTTCT 1380 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TGGTGTATGAATTTGTGGATAACAGTAACCTCCGTGTTCACCTGCACGAGAAGGAGGCTG 1440 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TGCTTCCATGGACAACGAGGTATAAAATAGTGAAGGACATTTGCGCAGCTCTGGTTCACC 1500 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TCCACCATGAAAGACGTCCATTCGTCCTTCACAGAAATATCAAACCAAACAACATACTCC 1560 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TGGACAAAGAGTTCAACGCCAAGCTAGCAGACTTCGGGCTGTCCAGAACTGCTGACAAGG 1620 consensus_1618#1 ------------------------------------------------------------ consensus_1618#0 TAGGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACGGGAAAGTTCAAGCGCAGCT 1680 consensus_1618#1 ----------------CGAGGCTCGTCSVATYGGGCAGGGGGGAAAGTTCAAGCGCAB-T 43 * ** ** ** ***************** * consensus_1618#0 CGGATGTCTACAGCTTTGGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATA 1740 consensus_1618#1 CGGATGTCTACAGCTTTRGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATA 103 ***************** ****************************************** consensus_1618#0 GCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACA 1800 consensus_1618#1 GCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACA 163 ************************************************************ consensus_1618#0 GGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGT 1860 consensus_1618#1 GGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGT 223 ************************************************************ consensus_1618#0 GTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGA 1920 consensus_1618#1 GTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGA 283 ************************************************************ consensus_1618#0 GTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACT 1980 consensus_1618#1 GTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACT 343 ************************************************************ consensus_1618#0 AAGAGTAGTATTAGTCCTGCTCTACCAGCAGGATCAGGCGAAGAACTGCTGGACTTAGTT 2040 consensus_1618#1 AAGAGTAGTATTAGTCCTGCTCTACCAGCAGGMTCAGGCGAAGAACTKCTGGACTTAGTT 403 ******************************** ************** ************ consensus_1618#0 AATAAATGCTTGG-ATTAATACGAGCATAATTTTTTATTGTTGTGATTCCTGCAAGTTAT 2099 consensus_1618#1 AATAAATGCTTGGGWTTAATACGVGCATA------------------------------- 432 ************* ******** ***** consensus_1618#0 TGTATCTTCTACATCCATTTATGTTTCTAATC 2131 consensus_1618#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||