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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1618#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2131 fasta sequence
[TCGTTACCAATTCCACCTTCACTCGACCACTCCAACAAAACATGGACATCTCTCACCTCCTCCTACGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCGCCTTCTCGCTCGACGATGCTCCCCATCACCATTGCACTGAAGCTGCAGCAACAACTCTTCCTCCACCACCACCACCACCATTCTCCTTCAAATTCGACTTCTCCAACACCTACACCTACCGCCTAGAAGACCTCCGATTCGAGGGCACGGCCGCCGTGCACGGCGCCACCGTCGACCTCACCTGCAACGTCGCCCAGTGCACGACGGGGCGCATGTCCTACGGCCGCGCTGTGCCACTCTGGGACAGAGCCACCAACGAGGTGGCCAGCTTCGCCACCGAGTTCGCCTTCAAGATCGTCACCCCGGACAACGTGGCCAGGGGAGACGGCATGGCCTTCTTCCTCTCCAGCTACCCCTCACGCGTCCCCCCCAACCCCAGCGGCCAGAGCTTCGGCCTCATCGCCGGCGACGCCGACCACGCCGGCGACGGCCCGGACCGGTTCATCGCCGTCGAGTTCGACACATACGATGACACCTTCGAACGGCCGAGGCCGGCCGGAGACCACATCGGCATCGATGTCAGCAGCGTCGCCGACTCGATTAACACGACGAGCTTGAACTTCAGCAGGAACGGGGCCATGAGGGCGTCCATCACCTTCGACAATGTCACCAGGATGCTGGTCGCCACCGTGCAGTTTACTGATCAGACTACTGCTTCGCGTGCTGCCCCTGTTCAGGTGAGTGCGAAACTTGGAGATCCCAGGGCGTTGCTGCCATCGGAGGTGGCCGTGGGATTTTCTACGGCGAACGGCGCAACATTCCAGCTCGATCAGATACTGTCATGGTCGTTCAACTCCACTCTTGCGTCTCCACATCCCGTAACCAAAGGTCATCACAAAAAGAAAGGGGCAGCAGGAAAGTTTGCGATTGTTGGAGCTCCCATATTTTTGCTTCTGGTGTGGTCTATCCTATCATGGTGGAAATGGAGAAGCTCAAGCCGCGACATTGACAAGAGAACTGGAGGTGTTAGGCAGTTCAAGTACAACGAGTTGGCTGCTGCAACGAATCAGTTCTCCTCTGAGAATAGGCTGATTGGAGCTGGTCCGTTCGGTGAAGGCTACAAGGGTTTCTTCAAGGAAATGGGCCGTCATGTTGCGATTAAGAAGATTTCGAAGGAGAGCAGATCAGAAGGAAGTAATAAGGACTTCTATGACGAAGTGAAAACCATCAGCAGTGCAAAGCACAAGAATCTCGTTGAACTTGTCGGTTGGTGCGTGAAGCGTAGATGGAACATGTTTGATTCCATGTGCTGGTGTAGGGAGAAGGCCCATACCATTTTCTTGGTGTATGAATTTGTGGATAACAGTAACCTCCGTGTTCACCTGCACGAGAAGGAGGCTGTGCTTCCATGGACAACGAGGTATAAAATAGTGAAGGACATTTGCGCAGCTCTGGTTCACCTCCACCATGAAAGACGTCCATTCGTCCTTCACAGAAATATCAAACCAAACAACATACTCCTGGACAAAGAGTTCAACGCCAAGCTAGCAGACTTCGGGCTGTCCAGAACTGCTGACAAGGTAGGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACGGGAAAGTTCAAGCGCAGCTCGGATGTCTACAGCTTTGGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAAGAGTAGTATTAGTCCTGCTCTACCAGCAGGATCAGGCGAAGAACTGCTGGACTTAGTTAATAAATGCTTGGATTAATACGAGCATAATTTTTTATTGTTGTGATTCCTGCAAGTTATTGTATCTTCTACATCCATTTATGTTTCTAATC]
[+] EMBL AK102268 [TCGTTACCAATTCCACCTTCACTCGACCACTCCAACAAAACATGGACATCTCTCACCTCCTCCTACGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCGCCTTCTCGCTCGACGATGCTCCCCATCACCATTGCACTGAAGCTGCAGCAACAACTCTTCCTCCACCACCACCACCACCATTCTCCTTCAAATTCGACTTCTCCAACACCTACACCTACCGCCTAGAAGACCTCCGATTCGAGGGCACGGCCGCCGTGCACGGCGCCACCGTCGACCTCACCTGCAACGTCGCCCAGTGCACGACGGGGCGCATGTCCTACGGCCGCGCTGTGCCACTCTGGGACAGAGCCACCAACGAGGTGGCCAGCTTCGCCACCGAGTTCGCCTTCAAGATCGTCACCCCGGACAACGTGGCCAGGGGAGACGGCATGGCCTTCTTCCTCTCCAGCTACCCCTCACGCGTCCCCCCCAACCCCAGCGGCCAGAGCTTCGGCCTCATCGCCGGCGACGCCGACCACGCCGGCGACGGCCCGGACCGGTTCATCGCCGTCGAGTTCGACACATACGATGACACCTTCGAACGGCCGAGGCCGGCCGGAGACCACATCGGCATCGATGTCAGCAGCGTCGCCGACTCGATTAACACGACGAGCTTGAACTTCAGCAGGAACGGGGCCATGAGGGCGTCCATCACCTTCGACAATGTCACCAGGATGCTGGTCGCCACCGTGCAGTTTACTGATCAGACTACTGCTTCGCGTGCTGCCCCTGTTCAGGTGAGTGCGAAACTTGGAGATCCCAGGGCGTTGCTGCCATCGGAGGTGGCCGTGGGATTTTCTACGGCGAACGGCGCAACATTCCAGCTCGATCAGATACTGTCATGGTCGTTCAACTCCACTCTTGCGTCTCCACATCCCGTAACCAAAGGTCATCACAAAAAGAAAGGGGCAGCAGGAAAGTTTGCGATTGTTGGAGCTCCCATATTTTTGCTTCTGGTGTGGTCTATCCTATCATGGTGGAAATGGAGAAGCTCAAGCCGCGACATTGACAAGAGAACTGGAGGTGTTAGGCAGTTCAAGTACAACGAGTTGGCTGCTGCAACGAATCAGTTCTCCTCTGAGAATAGGCTGATTGGAGCTGGTCCGTTCGGTGAAGGCTACAAGGGTTTCTTCAAGGAAATGGGCCGTCATGTTGCGATTAAGAAGATTTCGAAGGAGAGCAGATCAGAAGGAAGTAATAAGGACTTCTATGACGAAGTGAAAACCATCAGCAGTGCAAAGCACAAGAATCTCGTTGAACTTGTCGGTTGGTGCGTGAAGCGTAGATGGAACATGTTTGATTCCATGTGCTGGTGTAGGGAGAAGGCCCATACCATTTTCTTGGTGTATGAATTTGTGGATAACAGTAACCTCCGTGTTCACCTGCACGAGAAGGAGGCTGTGCTTCCATGGACAACGAGGTATAAAATAGTGAAGGACATTTGCGCAGCTCTGGTTCACCTCCACCATGAAAGACGTCCATTCGTCCTTCACAGAAATATCAAACCAAACAACATACTCCTGGACAAAGAGTTCAACGCCAAGCTAGCAGACTTCGGGCTGTCCAGAACTGCTGACAAGGTAGGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACGGGAAAGTTCAAGCGCAGCTCGGATGTCTACAGCTTTGGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAAGAGTAGTATTAGTCCTGCTCTACCAGCAGGATCAGGCGAAGAACTGCTGGACTTAGTTAATAAATGCTTGGATTAATACGAGCATAATTTTTTATTGTTGTGATTCCTGCAAGTTATTGTATCTTCTACATCCATTTATGTTTCTAATC]
consensusID : consensus_1618#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 432 fasta sequence
[CGAGGCTCGTCSVATYGGGCAGGGGGGAAAGTTCAAGCGCABTCGGATGTCTACAGCTTTRGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAAGAGTAGTATTAGTCCTGCTCTACCAGCAGGMTCAGGCGAAGAACTKCTGGACTTAGTTAATAAATGCTTGGGWTTAATACGVGCATA]
[+] EMBL BE229381 [CGAGGCTCGTCSVATYGGGCAGGGGGGAAAGTTCAAGCGCABTCGGATGTCTACAGCTTTRGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATAGCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACAGGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGTGTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGAGTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACTAAGAGTAGTATTAGTCCTGCTCTACCAGCAGGMTCAGGCGAAGAACTKCTGGACTTAGTTAATAAATGCTTGGGWTTAATACGVGCATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1618#0 TCGTTACCAATTCCACCTTCACTCGACCACTCCAACAAAACATGGACATCTCTCACCTCC 60
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TCCTACGCTTCTTCCTCCTCCTCCTCCTCCTCCTCCTCGCCTTCTCGCTCGACGATGCTC 120
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 CCCATCACCATTGCACTGAAGCTGCAGCAACAACTCTTCCTCCACCACCACCACCACCAT 180
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TCTCCTTCAAATTCGACTTCTCCAACACCTACACCTACCGCCTAGAAGACCTCCGATTCG 240
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 AGGGCACGGCCGCCGTGCACGGCGCCACCGTCGACCTCACCTGCAACGTCGCCCAGTGCA 300
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 CGACGGGGCGCATGTCCTACGGCCGCGCTGTGCCACTCTGGGACAGAGCCACCAACGAGG 360
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TGGCCAGCTTCGCCACCGAGTTCGCCTTCAAGATCGTCACCCCGGACAACGTGGCCAGGG 420
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 GAGACGGCATGGCCTTCTTCCTCTCCAGCTACCCCTCACGCGTCCCCCCCAACCCCAGCG 480
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 GCCAGAGCTTCGGCCTCATCGCCGGCGACGCCGACCACGCCGGCGACGGCCCGGACCGGT 540
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TCATCGCCGTCGAGTTCGACACATACGATGACACCTTCGAACGGCCGAGGCCGGCCGGAG 600
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 ACCACATCGGCATCGATGTCAGCAGCGTCGCCGACTCGATTAACACGACGAGCTTGAACT 660
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TCAGCAGGAACGGGGCCATGAGGGCGTCCATCACCTTCGACAATGTCACCAGGATGCTGG 720
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TCGCCACCGTGCAGTTTACTGATCAGACTACTGCTTCGCGTGCTGCCCCTGTTCAGGTGA 780
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 GTGCGAAACTTGGAGATCCCAGGGCGTTGCTGCCATCGGAGGTGGCCGTGGGATTTTCTA 840
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 CGGCGAACGGCGCAACATTCCAGCTCGATCAGATACTGTCATGGTCGTTCAACTCCACTC 900
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TTGCGTCTCCACATCCCGTAACCAAAGGTCATCACAAAAAGAAAGGGGCAGCAGGAAAGT 960
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TTGCGATTGTTGGAGCTCCCATATTTTTGCTTCTGGTGTGGTCTATCCTATCATGGTGGA 1020
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 AATGGAGAAGCTCAAGCCGCGACATTGACAAGAGAACTGGAGGTGTTAGGCAGTTCAAGT 1080
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 ACAACGAGTTGGCTGCTGCAACGAATCAGTTCTCCTCTGAGAATAGGCTGATTGGAGCTG 1140
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 GTCCGTTCGGTGAAGGCTACAAGGGTTTCTTCAAGGAAATGGGCCGTCATGTTGCGATTA 1200
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 AGAAGATTTCGAAGGAGAGCAGATCAGAAGGAAGTAATAAGGACTTCTATGACGAAGTGA 1260
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 AAACCATCAGCAGTGCAAAGCACAAGAATCTCGTTGAACTTGTCGGTTGGTGCGTGAAGC 1320
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 GTAGATGGAACATGTTTGATTCCATGTGCTGGTGTAGGGAGAAGGCCCATACCATTTTCT 1380
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TGGTGTATGAATTTGTGGATAACAGTAACCTCCGTGTTCACCTGCACGAGAAGGAGGCTG 1440
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TGCTTCCATGGACAACGAGGTATAAAATAGTGAAGGACATTTGCGCAGCTCTGGTTCACC 1500
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TCCACCATGAAAGACGTCCATTCGTCCTTCACAGAAATATCAAACCAAACAACATACTCC 1560
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TGGACAAAGAGTTCAACGCCAAGCTAGCAGACTTCGGGCTGTCCAGAACTGCTGACAAGG 1620
consensus_1618#1 ------------------------------------------------------------
consensus_1618#0 TAGGCAAGGCCAGATACCTGGATCCAGAATGCAAAAAGACGGGAAAGTTCAAGCGCAGCT 1680
consensus_1618#1 ----------------CGAGGCTCGTCSVATYGGGCAGGGGGGAAAGTTCAAGCGCAB-T 43
* ** ** ** ***************** *
consensus_1618#0 CGGATGTCTACAGCTTTGGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATA 1740
consensus_1618#1 CGGATGTCTACAGCTTTRGGATTGTTCTGCTAGAGATTGCGTGCAAGAAGGATGAAAATA 103
***************** ******************************************
consensus_1618#0 GCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACA 1800
consensus_1618#1 GCTTTGCGAAAGTGTGGAGCCGGTATCTAGAGAAGTCTCTGATGCAGGTAGCTGATGACA 163
************************************************************
consensus_1618#0 GGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGT 1860
consensus_1618#1 GGTTAAGAGGTGAGTTTGATGAGAGGCAGATGGAGCGTGTCATCATCTTGGGGTTATGGT 223
************************************************************
consensus_1618#0 GTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGA 1920
consensus_1618#1 GTTGTCAGCCCAATATTGACATGCGGCCTACCGTGCAACAAGCAATGGATTTCCTGGAGA 283
************************************************************
consensus_1618#0 GTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACT 1980
consensus_1618#1 GTGATGGGCCATTGCCTGAATTGGCTGAACCGGAGACCTCCTCAAGTAAAATTGGTAACT 343
************************************************************
consensus_1618#0 AAGAGTAGTATTAGTCCTGCTCTACCAGCAGGATCAGGCGAAGAACTGCTGGACTTAGTT 2040
consensus_1618#1 AAGAGTAGTATTAGTCCTGCTCTACCAGCAGGMTCAGGCGAAGAACTKCTGGACTTAGTT 403
******************************** ************** ************
consensus_1618#0 AATAAATGCTTGG-ATTAATACGAGCATAATTTTTTATTGTTGTGATTCCTGCAAGTTAT 2099
consensus_1618#1 AATAAATGCTTGGGWTTAATACGVGCATA------------------------------- 432
************* ******** *****
consensus_1618#0 TGTATCTTCTACATCCATTTATGTTTCTAATC 2131
consensus_1618#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||