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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 812 fasta sequence
[ACTCACTCACTCACACTGAACTCCTATGGCCTCCGCCGTCGTAGCCAAGCCACCGGCCGCCGCTCCGGCGAGCCGCCGCCGATGCTTCGTCTTCGTAGAGCGCGCCGCCGCCGCCGCCGTCGGCGTCAACGCGGCGATCGCTGCCGTCGATGACCATCGCCCAGTTCCGGCCGCGGCCGCCGCCGCCATGGACGACGTCGTCGGCCGCGTCGCGCGGCCTGCGCGCCCCAGCGCGCGCGCCATCATGGAGGGGACGCACAAGCAGATCAGCTCCGGCGGCGCCTCGGGCGGCTACTGCACCGTGCCGTGGTGCAGCATCTGCACCGGGAATAACCCGTTCGCCATTGCCGAGTTCTTGCTGTGCTGCAACCTCTGCGGCGTCCCTCTCGCCGGCCGCCCCAGCTTCATCTACATTGGAGAGAAGGCGTTCTGCAAGGAGGAGTGCAGGTCGAGGTACGTGGTGGAGGAGGCGCTGCGCGAGGCGAGGGAGGAGAAGCGCCGCGCCGCCGCCGCCGCCGCCGCGTCGCCGGAGAAGAAGAAGGAGGCGGCGGCGGCGAGGAAGGGCGGGGAGGAGTGCAGGGAGGGGAGCATCTTCTTCATCTGCGCCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAAT-AGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCACCATGCATGGCTAGTCGATATATATCTGAGTATTT]
[+] EMBL AK108210 [ACTCACTCACTCACACTGAACTCCTATGGCCTCCGCCGTCGTAGCCAAGCCACCGGCCGCCGCTCCGGCGAGCCGCCGCCGATGCTTCGTCTTCGTAGAGCGCGCCGCCGCCGCCGCCGTCGGCGTCAACGCGGCGATCGCTGCCGTCGATGACCACCGCCCAGTTCCGGCCGCGGCCGCCGCCGCCATGGACGACGTCGTCGGCCGCGTCGCGCGGCCTGCGCGCCCCAGCGCGCGCGCCATCATGGAGGGGACGCACAAGCAGATCAGCTCCGGCGGCGCCTCGGGCGGCTACTGCACCGTGCCGTGGTGCAGCATCTGCACCGGGAATAACCCGTTCGCCATTGCCGAGTTCTTGCTGTGCTGCAACCTCTGCGGCGTCCCTCTCGCCGGCCGCCCCAGCTTCATCTACATTGGAGAGAAGGCGTTCTGCAAGGAGGAGTGCAGGTCGAGGTACGTGGTGGAGGAGGCGCTGCGCGAGGCGAGGGAGGAGAAGCGCCGCGCCGCCGCCGCCGCCGCCGCGTCGCCGGAGAAGAAGAAGGAGGCGGCGGCGGCGAGGAAGGGCGGGGAGGAGTGCAGGGAGGGGAGCATCTTCTTCATCTGCGCCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAAT AGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCACCATGCATGGCTAGTCGATATATATCTGAGTATTT]
[+] EMBL BI799378 [ ACTCACTCACACTGAACTCCTATGGCCTCCGCCGTCGTAGCTAAGCCACC GCCGCCGCTCCGGCGAGCCGCCGCCGATGCTTCGTCTTCGTAGAGCGCGCCGCCGCCGCCGCCGTCGGCGTCAACGCGGCGATCGCTGCCGTCGATGACCATCGCCCA ]
[+] EMBL BI800093 [ TGGCCTCCGCCGTCGTAGCCAAGCCACCGGCCGCCGCTCCGGCGAGCCGCCGCCGATGCTTCGTCTTCGTAGAGCGCGCCGCCGCCGCCGCCGTCGGCGTCAACGCGGCGATCGCTGCCGTCGATGACCATCGCCCAGTT ]
[+] EMBL AU069863 [ CGCATTGGACGACGTCGTCGGCCGCGTCGCGCGG CTGCGCGCCCCA NCGNGCGCCATCATGGAGGGGACGCACAAGCAGATCAGCTCCGGCGGCGCCTCGGGCGGCTACTGCACCGTGCCGTGGTGCAGCATCTGCACCGGGAATAACCCGTTCGCCATTNCCGAGTTCTTGCTGTGCTGCAACCTCTGCGGCGTCCCTCTCGCCGGCCGCCCCAGCTTCATCTACATTGGAGAG ]
[+] EMBL AA749774 [ CATCACGCGTGCATTGCATGGCGGATGATAATCGGANCTNNGCTGTAATAATAATCGATCTCCACCATAATATAATACAAT AGTAATATACTTAGTGTACTGTAATGAGGATGAATAAA ]
[+] EMBL AA750994 [ TGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAA GGGATCAAATCAAGGCCACCATGCATGGCATGTCG ]
consensusID : consensus_16193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 624 fasta sequence
[NCANTGGACGACGTCGTGGCCGCGTCGCGCGGCATGCGCGCCCCAGCGCNGCGCCATCATGGAGGGGACGCACAAGCAGATCAGCTCCGGCGGCGCCTCGGGCGGCTACTGCACCGTGCCGTGGTGCAGCATCTGCACCGGGAATAACCCGTTCGCCATTGCCGAGTTCTTGCTGTGCTGCAACCTCTGCGGCGTCCCTCTCGCCGGCCGCCCCAGCTTCATCTACATTGGAGAGAAGGCGTTCTG-CAAGGAGGAGTG-CAGGTCGAGGTACGTGGTGGAGG-AGGC-CTGCGCGAGGCGAGGGAGGAGAAGCGCCGCGCCGCCG-CCGCCGCCGCCGCGTCGCCGGAGAAGAAGAAGGAGGCGGCGG-CCGCCAGGAAGGGCGGGGAGGAGTGCAGGGAGGGGAGCATCTTCTTCATCTGC-GCCGAC-GACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCACCATGCATGGCTAGTCGATAAAAAAAAAAAAAAA]
[+] EMBL AU163723 [NCANTGGACGACGTCGTGGCCGCGTCGCGCGGCATGCGCGCCCCAGCGCNGCGCCATCATGGAGGGGACGCACAAGCAGATCAGCTCCGGCGGCGCCTCGGGCGGCTACTGCACCGTGCCGTGGTGCAGCATCTGCACCGGGAATAACCCGTTCGCCATTGCCGAGTTCTTGCTGTGCTGCAACCTCTGCGGCGTCCCTCTCGCCGGCCGCCCCAGCTTCATCTACATTGGAGAGAAGGCGTTCTG CAAGGAGGAGTG CAGGTCGAGGTACGTGGTGGAGG AGGCGCTGCGCGAGGCGAGGGAGG ]
[+] EMBL AU101307 [ ccttTCTCGCCGGCCGCCCCAGCTTCATCTACATTGGAGAGAAGGCGTTCTGCCAAGGAGGAGTGNCAGGTCGAGGTACGTGGTGGAGGAAGGC CTGCGCGAGGCGAGGGAGGAGAAGCGCCGCGCCGCCG CCGCCGCCGCCGCGTCGCCGGAGAAGAAGAAGGAGGCGGCGG CGGCNAGGAAGGGCGGGGAGGAGTGCAGGGAGGGGAGCATCTTCTTCATCTGC GCCGAC GACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCACCATGCATGGCTAGTCGATAAAAAAAAAAAAAAA]
[+] EMBL AU069911 [ GGNAGGAGAAACGCCGCGCCGCCGCCCGCCGCCGCCGCGTCGCCGGAGAAGAAGAAGGAGNCGGCGGCCCCCCAGGAAGGGCGGGGAGGAGTGCAGGGAGGGGAGCATCTTCTTCATCTGC GCCGAC GACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCACCATGCATGGCTAGTCNTTAAAA ]
[+] EMBL C99132 [ aCGGCGC CCGCCAGGAAGGNCGGGGAGGAGTGCAGGGAGGGGAGCATCTTCTTCATCTGC GCCGAC GACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATNATAATCGATCTCCNCCATNATATAATACNATAGTNATATACTTAGTGTACTGTAATGAGGNTGAATAAAGGGGATNAAATNAAGGCCACCATGCATGGCTAGTCNTTAAAAAAAAAAAAAA ]
[+] EMBL BI804801 [ GAGTGCAGGGAGGGGAGCATCTTCTTCATCTGC GCCGAC GACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATAC ATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCACCATGCATGGCTAGTCGATAAAAAAAA ]
[+] EMBL BI802838 [ gcagtcCAGCTTCTTCATCTGCAGCCGACAGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCACCATGCATGGCTAGTCGATATAAAAA ]
[+] EMBL BI803446 [ AAGAATGTGATGGATATGATGCATCATGCGT CATTGCAT GCGGATGATAATCGGAGCTT GCTGTAATAATAATCGATCTCCACCATAATATAATAC ATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATC AATC AGCCCACCATGCATGGCTAGTCGATATAAAAA ]
consensusID : consensus_16193#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 576 fasta sequence
[GTCCCCCGATAGTAATTCACACCTAGTACGAGAGGAACCGTNGATTGCACACAATTGGTCATCGCGCTTGTTTGAAAACCCCAGTGGCGCAGAAGCTACCGTGTCCCGGATTATGACTGAACCGCCTCTAAGTCAGAATCCAAGCTAGCAAGCGGCAGCATGCAGCCCACACAGCCC-GCCCCGACCCACGTTAGGGGCACCAAGCCCCACAAGGCCACCAGTGCCACC-GCACAAGCC--GCCCAGCACACCAGCACACACCCAGC-GGC-GTC-GCC-GGAGAAGAAGAAGGA-GCGGC-GGC-GGCGAGGAAGGGC-GGGGAGGAGTGCAGGGAGGGGAGCATC-TTCTT-CATCTGC-GCCGAC-GAC-C-TGTGAAGAATGTGATGGATATGATGCATCATGC-GTGCA-TTGCATGGC-GGATGATAATC-GGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCACCATGCATGGCTAGTC-GATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANA]
[+] EMBL BI804063 [GTCCCCCGATAGTAATTCACACCTAGTACGAGAGGAACCGTNGATTGCACACAATTGGTCATCGCGCTTGTTTGAAAACCCCAGTGGCGCAGAAGCTACCGTGTCCCGGATTATGACTGAACCGCCTCTAAGTCAGAATCCAAGCTAGCAAGCGGCAGCATGCAGCCCACACAGCCC GCCCCGACCCACGTTAGGGGCACCAAGCCCCACAAGGCCACCAGTGCCACC GCACAAGCC GCCCAGCACACCAGCACACACCCAGC GGCTGTC GCC GGAGAAGAAGAAGGA GC GC GC GGCGAGGAAGGCC GGGGAGGA TCCAGGGAGGGGAGCATCTTTCTT CATCTGC GCCGAC GAC C TGTGAAGAATGTGATGGATATGATGCATCATGC GTCCATTTCCATGCC GGATGATAATC GGAGCTTGCCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAA GCCACCATGCATGGCTAGTC GATATAAAAAAAAAA ]
[+] EMBL BI803690 [ aACCTAGTACGAGAGGAACCGTTGATT CACACAATTGGTCATCGCGCTTGGTTGAAAA GCCAGTGGCGC GAAGCTACCGTGTGCCGGATTATGACTGAA CGCCTCTAAGTCAGAATCCAAGCTAGCAAGCGGC GCCTGC GCCCAGCCAGCCCAGCCCCGACCCACGTTAGGGGC GCAAGCCCC CAAGGGC CC GTGCCACCGGCACAAGCCAGGCCCGGC CGCCGCCAGCCAGCCAGC GGC GTC GCC GGAGAAGAAGAAGGAGGCGGC GGC GGCGAGGAAGGGC GGGGAGGAGTGCAGGGAGGGGAGCATC TTCTTGCATCTGC GCCGAC GAC C TGTGAAGAATGTGATGGATATGATGCATCATGC GTGCA TTGCATGGC GGATGATAATC GGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCCCCATGCATGGCTAGTC GATATAAAAAAAAAA ]
[+] EMBL BI802733 [ caCAGCAGGC GTC GCC GGAGAAGAAGAAGGA GCGGC GGC GGCGAGGAAGGGC GGGGAGGAGTGCAGGGAGGGGAGCATC TTCTT CATCTGC GCCGACAGAC C TGTGAAGAATGTGATGGATATGATGCATCATGC GTGCA TTGCATGGCAGGATGATAATC GGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGCCCACCATGCATGGCTAGTC GATAAAAAAAAAAAAAA ]
[+] EMBL BI802168 [ cgcacaC GGC GTCAGCCAGGAGAAGAAGAAGGA GCAGCAGGCAGGCGAGGAAGGGCAGGGGAGGAGTGCAGGGAGGGGAGCATC TTCTT CATCTGCAGCCGACAGACACATGTGAAGAATGTGATGGATATGATGCATCATGCAGTGCA TTGCATGGCAGGATGATAATCAGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCACCATGCATGGCTAGTCAGATAAAAAA ]
[+] EMBL AU163946 [ AC C TGTGAAGAATGTGATGGATATGATGCATCATGC GTGCA TTGCATGGC GGATGATAATC GGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCACCATGCATGGCTAGTC GATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANA]
consensusID : consensus_16193#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 517 fasta sequence
[CCATCTGGTCGA-CCACGCGTC--GTAGCCACTAGCCAAG--TGTATATTCTCGGGGGAGAGTGTTGGGCGAAGGTGA-TTTTC-GTCCAACAAGAAGTGTG-AAAGATGGACTC-AAGACCGGAAACTCA-A-AGTGGAGAGAAGGCGTTCTG-CAAGGAGGA-GTG-CAG-GTCGAG-GTAC-GTGGTGGAGGAGGCGCTGCG-CGAG-GCGAGGGAGGAGAA-GCGCCGCG-CCG-CCGCC-GCCGCC-GCGGCGTCGCCGGAGA-AGAAGAAGGAGGCGGCGGCGG-CGAGGAAGGG-CG-GGGAGGAGTG-CAGGGAGGGGAGCATCTTC-TTCATCTGCG-CCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCA-CCATGCATGGCTAGTCGATAAAAAAAAAA]
[-] EMBL BI794859 [CCATCTGGTCGA CCACGCGTC G CACTAGCCAAG TGTATATTCTCGGGGGAGAGTGTTGGGCGAAGGTGA TTTTC GTCCAACAAGAAGTGTG AAAGATGGACTC AAGACCGGAAACTCA A AGTGGAGAGAAGGCGTTCTG CAAGGAGGA GTG CAG GTCGAG GTAC GTGGTGGAGGAGGCGCTGCG CGAG GCGAGGGAGGAGAA GCGCCGCG CCG CCGCC GCCGCC GCGGCGTCGCCGGAGA AGAAGAAGGAGGCGGCGGCGG CGAGGAAGGG CG GGGAGGAGTG CAGGGAGGGGAGCATCTTC TTCATCTGCG CCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCA CCATGCATGGCTA ]
[+] EMBL BI804622 [ TCGACCCACGCGTCCGGTAGCCACTAGCCAAGTTTGTATATTCTCGGGGGAGAGTGTTGGGCGAAGGTGA TTTTC GTCCAACAAGAAGTGTG AAAGATGGACTC AAGACCGGAAACTCA A AGTGGAGAGAAGGCGTTCTG CAAGGAGGA GTG CAG GTCGAG GTAC GTGGTGGAGGAGGCGCTGCG CGAG GCGAGGGAGGAGAA GCGCCGCG CCG CCGCC GCCGCC GCGGCGTCGCCGGAGA AGAAGAAGGAGGCGGCGGCGG CGAGGAAGGG CG GGGAGGAGTG CAGGGAGGGGAGCATCTTC TTCATCTGCG CCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATC AATC AGGCCA CCATGCATGGCTAGTCGATATAAAAA ]
[+] EMBL BI800639 [ GTAGCCACTA CCAAGTTTGTATATTCTCGGGGGAGAGTGTTGGGCGAA GTGA TTTTC GTCCAACAAGAAGTGTG AAAGATGGACTC AAGACCGGAAACTCA A AGTGGAGAGAAGGCGTTCTG CAAGGAGGA GTG CAG GTCGAG GTAC GTGGTGGAGGAGGCGCTGCG CGAG GCGAGGGAGGAGAA GCGCCGCG CCG CCGCC GCCGCC GCGGCGTCGCCGGAGA AGAAGAAGGAGGCGGCGGCGG CGAGGAAGGG CG GGGAGGAGT CAGGGAGGGGAGCATCTTC TTCATCTGCG CCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATAC ATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAA GCCC CCATGCATGGCTAGTCGATAAAAAAA ]
[+] EMBL BI801951 [ CCAAGTTTGTATATTCTCGGGGGAGAGTGTTGGGCGAAGGTGA TTTTC GTCCTACAAGAAGTGTG AAAGATGGACTC AAGACCGGAAACTCA A AGTGGAGAGAAGGCGTTCTGCCAAGGAGGA GTG CAG GTCGAG GTAC TTGTTGGAGGAGGCGCTGCG CGAG GCGAGGGAGGAGAATGCTCCGCGTCCGTCCGCC GCCGCCAGCGGCGTCGCCGGAGA AGAAGAAGGAGGCGGCGGCGG CGAGGAAGGG CG GGGAGGAGTG CAGGGAGGGGAGCATCTTC TTCATCTGCG CCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATAC ATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCA CCATGCATGGCTAGTCGATAAAAAAAAA ]
[+] EMBL BI801244 [ ccccattt TGTATATTCTCGGGGGAGA T TTGGCCGAAGGTGA TTTTC G CCCACAAGAAGTGTG AAAGATGGACTC AAGACCGGAAACTCA A AGTGGAGAGAAGGCGTTCTG CAAGGAGGA GTG CAG GTCGAG GTAC GTGGTGGAGGAGGCGCTGCG CGAG GCGAGGGAGGAGAA GCGCCGCG CCG CCGCC GCCGCC CGGCGTCGCCGGAGA AGAAGAAGGA GC GCGGCGG CGAGGAAGGG CG GGGAGGAGTG CAGGGAGGGGAGCATCTTC TTCATCTGCG CCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATAC ATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCC CCATGCATGGCTAGTCGATAAAAAAAAAA]
[+] EMBL BI801399 [ TGTATATTCTCGGGGGAGA TTTTGGCCGAAGGTGA TTTTC GTCCAACAAGAAGTGTG AAAGATGGACTC AAGACCGGAAACTCA A AGTGGAGAGAAGGCGTTCTG CAAGGAGGA GTG CA GTCGAG GTACAGTGGTGGAGGAGGCGCTGCG CGAG GCGAGGGAGGAGAA GC CCGC CC CCTCCAGCCGCC GCGGCGTCGCCGGAGA AGAAGAAGGAGGCGGCGGCGGTCGAGGAAGGG CG GGGAGGA TT CAGGGAGGGGAGCATCTTCGTTCATCTGCGCCCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAAGACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGCCCACCCATGCATGGCTAGTCGAAAAA ]
[+] EMBL BI803902 [ GAGTGTT GGCGAAGGTGATTTTTC GTCCAACAAGAAGTGTG AAAGATGGACTC AAGACCGGAAACTCA A AGTGGAGAGAAGGCGTTCTG CAAGGAGGA GT CA GTCGAG GTAC GTGGTGGAGGAGGC CTGCG CGAG GCGAGGGAGGAGAA GC CCGC CCG CC CC GCCGCCAGCGGCGTCGCCGGAGA AGAAGAAGGA GC GC GCGG CGAGGAA GG CG GGGAGGAGTG CAGGGAGGGGAGCATCTTC TTCATCTGCG CCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGT CATTGCATGGCGGATGATAATCGGAGCTT GCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGCCCA CCATGCATGGCTAGTCGATAAAAAA ]
[+] EMBL BI800330 [ TGGGCGAAGGTGA TTTTCTGTCC ACAAGAAGTGTGTAAAGATGGACTCAAAGACCGGAAACTCACA AGTGGAGAGAAGGCGTTCTG CAAGGAGGA GTG CAG GTCGAG GTAC TTGGTGGAGGAGGC CTGCG CGAG GCGAGGGAGGAGAA GC CCGC CC CC CC CC CC CGGCGTC CCGGAGA AGAAGAAGGA GCGGC GCGG CGAGGAAGGG CG GGGAGGAGTG CAGGGAGGGGAGCATCTTC TTCATCTGCG CCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCACCCATGCATGGCTAGTCGATAAAAAAA ]
[+] EMBL BI800605 [ AAAGATGGACTC AAGACCGGAAACTCA ATAGTGGAGAGAAGGCGTTCTG CAAGGAGGATGTGTCAGTGTCGAGTGTAC GTGGTGGAGGAGGCGCTGCGTCGAGTGCGAGGGAGGAGAA GCGCCGCG CCG CCGCC GCCGCC GCGGCGTCGCCGGAGA AGAAGAAGGA GCGGC GCGG CGAGGAA GG CG GGGAGGAGTG CAGGGAGGGGAGCATCTTC TTCATCTGCG CCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATAC ATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCA CCATGCATGGCTAGTCGATATAAAAAA ]
[+] EMBL BI800468 [ CGCCGGAGATAGAAGAAGGAGGCGGCGGCGGCCGAGGAAGGGCCGCGGGAGGAGTGCCAGGGAGGGGAGCATCTTC TTCATCTGCG CCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGGCTGTAATAATAATCGATCTCCACCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAATCAAGGCCA CCATGCATGGCTAGTCGATAAAAAAAAAA]
consensusID : consensus_16193#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence
[TAGCCAGTTTGTATATTCTCGGGGAGATTTTTGGCCGAAGTGATTTTCGTCCAACAAGAAGTGTGAAAGATGGACTCAAGACCGGAAACTCAAATTGGAGAGAAGGCAGTTCTGCAAGGAGGACGTGCAGTCGAGGTACAGTGGTGGAGGAGCGCTCTGCGCAGAGGCGAGGGAGGAGAAGCAGCCGCAGCCAGCACAGCACAGCCAGCACGCAGGCGTCGCCGGAGAAGAAGAAGGAGCGCGCGGCGAGGAAGGCGGGGAGGAGTGCAGGGAGGGGAGCATCTTCTTCATCTGCGCCAGACAGACCATGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCAGGATGATAATCGGAGCTTGGCATGTAATAATAATCGATCTCCAACCAATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAAATCAAGGCCAACCATGCATGGCTAGTCGATAAAAAAAAAA]
[+] EMBL BI802005 [TAGCCAGTTTGTATATTCTCGGGGAGATTTTTGGCCGAAGTGATTTTCGTCCAACAAGAAGTGTGAAAGATGGACTCAAGACCGGAAACTCAAATTGGAGAGAAGGCAGTTCTGCAAGGAGGACGTGCAGTCGAGGTACAGTGGTGGAGGAGCGCTCTGCGCAGAGGCGAGGGAGGAGAAGCAGCCGCAGCCAGCACAGCACAGCCAGCACGCAGGCGTCGCCGGAGAAGAAGAAGGAGCGCGCGGCGAGGAAGGCGGGGAGGAGTGCAGGGAGGGGAGCATCTTCTTCATCTGCGCCAGACAGACCATGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCAGGATGATAATCGGAGCTTGGCATGTAATAATAATCGATCTCCAACCAATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGGGGATCAAAATCAAGGCCAACCATGCATGGCTAGTCGATAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16193#0 ACTCACTCACTCACACTGAACTCCTATGGCCTCCGCCGTCGTAGCCAAGCCACCGGCCGC 60
consensus_16193#1 ------------------------------------------------------------
consensus_16193#3 ------------------------------------------------------------
consensus_16193#4 ------------------------------------------------------------
consensus_16193#2 ------------------------------------------------------------
consensus_16193#0 CGCTCCGGCGAGCCGCCGCCGATGCTTCGTCTTCGTAGAGCGCGCCGCCGCCGCCGCCGT 120
consensus_16193#1 ------------------------------------------------------------
consensus_16193#3 ------------------------------------------------------------
consensus_16193#4 ------------------------------------------------------------
consensus_16193#2 ------------------------------------------------------------
consensus_16193#0 CGGCGTCAACGCGGCGATCGCTGCCGTCGATGACCATCGCCCAGTTCCGGCCGCGGCCGC 180
consensus_16193#1 ------------------------------------------------------------
consensus_16193#3 ------------------------------------------------------------
consensus_16193#4 ------------------------------------------------------------
consensus_16193#2 ------------------------------------------------------------
consensus_16193#0 CGCCGCCATGGACGACGTCGTCGGCCGCGTCGCGCGGCCTGCGCGCCCCAGCGCGCGCGC 240
consensus_16193#1 ----NCANTGGACGACGTCGT-GGCCGCGTCGCGCGGCATGCGCGCCCCAGCGCN-GCGC 54
consensus_16193#3 ------------------------------------------------------------
consensus_16193#4 ------------------------------------------------------------
consensus_16193#2 ------------------------------------------------------------
consensus_16193#0 CATCATGGAGGGGACGCACAAGCAGATCAGCTCCGGCGGCGCCTCGGGCGGCTACTGCAC 300
consensus_16193#1 CATCATGGAGGGGACGCACAAGCAGATCAGCTCCGGCGGCGCCTCGGGCGGCTACTGCAC 114
consensus_16193#3 -----------------------------------CCATCTGGTCGACCACGCGTCGTAG 25
consensus_16193#4 ------------------------------------------------------------
consensus_16193#2 -----------------GTCCCCCGATAGTAATTCACACCTAGTACGAGAGGAACCGTNG 43
consensus_16193#0 CGTGCCGTGGTGCAGCATCTGCACCGGGAATAACCCGTTCGCCATTGCCGAGTTCTTGCT 360
consensus_16193#1 CGTGCCGTGGTGCAGCATCTGCACCGGGAATAACCCGTTCGCCATTGCCGAGTTCTTGCT 174
consensus_16193#3 CCACTAGCCAAGT-GTATATTCTCGGGGGAGAGT--GTTGGGCGAAGGTGATTTTCGTCC 82
consensus_16193#4 ----TAGCCAGTTTGTATATTCTCGGGG-AGATT--TTTGGCCGAAG-TGATTTTCGTCC 52
consensus_16193#2 ATTGCACACAATTGGTCATCGCGCTTGTTTGAAAA-CCCCAGTGGCGCAGAAGCTACCGT 102
* * * * * * **
consensus_16193#0 GTGCTGCAACCTCTGCGGCGTCCCTCTCGCCGGCCGCCCCAGCTTCATCTACATTGGAGA 420
consensus_16193#1 GTGCTGCAACCTCTGCGGCGTCCCTCTCGCCGGCCGCCCCAGCTTCATCTACATTGGAGA 234
consensus_16193#3 AACAAGAAGTGTGAAAGATGGACTCAAGACCGGAAACTCAA-----------AGTGGAGA 131
consensus_16193#4 AACAAGAAGTGTGAAAGATGGACTCAAGACCGGAAACTCAA-----------ATTGGAGA 101
consensus_16193#2 GTCCCGGATTATGACTGAACCGCCTCTAAGTCAGAATCCAAGCT--------AGCAAGCG 154
* * * * * * * *
consensus_16193#0 GAAGGC-GTTCTGCAAGGAGGA-GTGCAGGTCGAGGTAC-GTGGTGGAGGAG-GCGCTGC 476
consensus_16193#1 GAAGGC-GTTCTGCAAGGAGGA-GTGCAGGTCGAGGTAC-GTGGTGGAGGAG-GC-CTGC 289
consensus_16193#3 GAAGGC-GTTCTGCAAGGAGGA-GTGCAGGTCGAGGTAC-GTGGTGGAGGAG-GCGCTGC 187
consensus_16193#4 GAAGGCAGTTCTGCAAGGAGGACGTGCAG-TCGAGGTACAGTGGTGGAGGAGCGCTCTGC 160
consensus_16193#2 GCAGCATGCAGCCCACACAGCCCGCCCCGACCCACGTTA-GGGGCACCAAGCCCCACAAG 213
* ** * ** ** * * * * * ** * ** * *
consensus_16193#0 GC--GAGGCGAGGGAGGAGAAGC-GCCGCGCC------GCCGCCGCCGCCGCCGCGTCGC 527
consensus_16193#1 GC--GAGGCGAGGGAGGAGAAGC-GCCGCGCC------GCCGCCGCCGCCGCCGCGTCGC 340
consensus_16193#3 GC--GAGGCGAGGGAGGAGAAGC-GCCGCGCC------GCCGCCGCCGCCGCGGCGTCGC 238
consensus_16193#4 GCA-GAGGCGAGGGAGGAGAAGCAGCCGCAGCCAGCACAGCACAGCCAGCACGCAGGCGT 219
consensus_16193#2 GCCACCAGTGCCACCGCACAAGCCGCCCAGCACAC--CAGCACACACCCAGCGGCGTCGC 271
** * * * * **** *** * * * * * **
consensus_16193#0 CGGAGAAGAAGAAGGAGGCGGCGGCGGCGAGGAAGGGCGGGGAGGAGTGCAGGGAGGGGA 587
consensus_16193#1 CGGAGAAGAAGAAGGAGGCGGCGGCCGCCAGGAAGGGCGGGGAGGAGTGCAGGGAGGGGA 400
consensus_16193#3 CGGAGAAGAAGAAGGAGGCGGCGGCGGCGAGGAAGGGCGGGGAGGAGTGCAGGGAGGGGA 298
consensus_16193#4 CGCCGGAGAAGAAGAAGGAGCGCGCGGCGAGGAAGG-CGGGGAGGAGTGCAGGGAGGGGA 278
consensus_16193#2 CGGAGAAGAAGAAGGAG-CGGCGGCGGCGAGGAAGGGCGGGGAGGAGTGCAGGGAGGGGA 330
** * ******** ** * ** ** ******* ***********************
consensus_16193#0 GCATCTTCTTCATCTGCGCC-GAC-GACC-TGTGAAGAATGTGATGGATATGATGCATCA 644
consensus_16193#1 GCATCTTCTTCATCTGCGCC-GAC-GACC-TGTGAAGAATGTGATGGATATGATGCATCA 457
consensus_16193#3 GCATCTTCTTCATCTGCGCC-GAC-GACC-TGTGAAGAATGTGATGGATATGATGCATCA 355
consensus_16193#4 GCATCTTCTTCATCTGCGCCAGACAGACCATGTGAAGAATGTGATGGATATGATGCATCA 338
consensus_16193#2 GCATCTTCTTCATCTGCGCC-GAC-GACC-TGTGAAGAATGTGATGGATATGATGCATCA 387
******************** *** **** ******************************
consensus_16193#0 TGCGTGCATTGCATGGC-GGATGATAATCGGAGCTTGGC-TGTAATAATAATCGATCTCC 702
consensus_16193#1 TGCGTGCATTGCATGGC-GGATGATAATCGGAGCTTGGC-TGTAATAATAATCGATCTCC 515
consensus_16193#3 TGCGTGCATTGCATGGC-GGATGATAATCGGAGCTTGGC-TGTAATAATAATCGATCTCC 413
consensus_16193#4 TGCGTGCATTGCATGGCAGGATGATAATCGGAGCTTGGCATGTAATAATAATCGATCTCC 398
consensus_16193#2 TGCGTGCATTGCATGGC-GGATGATAATCGGAGCTTGGC-TGTAATAATAATCGATCTCC 445
***************** ********************* ********************
consensus_16193#0 A--CCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGG 760
consensus_16193#1 A--CCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGG 573
consensus_16193#3 A--CCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGG 471
consensus_16193#4 AACCAATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGG 458
consensus_16193#2 A--CCATAATATAATACAATAGTAATATACTTAGTGTACTGTAATGAGGATGAATAAAGG 503
* * *******************************************************
consensus_16193#0 GGATCAAA-TCAAGGCCA-CCATGCATGGCTAGTCGATATATATCTGAGTATTT------ 812
consensus_16193#1 GGATCAAA-TCAAGGCCA-CCATGCATGGCTAGTCGATAAAAAAAAAAAAAAA------- 624
consensus_16193#3 GGATCAAA-TCAAGGCCA-CCATGCATGGCTAGTCGATAAAAAAAAAA------------ 517
consensus_16193#4 GGATCAAAATCAAGGCCAACCATGCATGGCTAGTCGATAAAAAAAAAA------------ 506
consensus_16193#2 GGATCAAA-TCAAGGCCA-CCATGCATGGCTAGTCGATAAAAAAAAAAAAAAAAAAAAAA 561
******** ********* ******************** * * *
consensus_16193#0 ---------------
consensus_16193#1 ---------------
consensus_16193#3 ---------------
consensus_16193#4 ---------------
consensus_16193#2 AAAAAAAAAAAAANA 576
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||