|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1115 fasta sequence
[AGTACACCACCTCTCTCCCTGGTCTTGTTTGGCTAGCTAAGCTAGTGAGAGATGCCGCCACTGAATCCAAGAGTGGTTGGGTGTGGGGAGAGGACACTGGTCCTCTCCCATGGCTATGGAGGCAGCCAGGCCATCTGGGACAGGGTGCTGCCTCATCTCGCCGAGACGAACAAGGTCGTCCTGTTCGACTGGGACTTCTCCGGCGGCGGCGGCGACGGCGAGAAGGCGGCGGCGGAGGAGGAGGAGGAGTACACGTTCGAGGGGTTCGCGGACGAGCTGGTGGCGCTGATGGAGGAGATGGGGGTGAGCGGGGCGGTGTACGTGGGGCATTCCATGGCCGGCATGATCGGCTGCATTGCCTCCATCAACCGCCCCGGCCTCTTCACCCACCTCGTGCTCGTCGGCGCCTCCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGCCGGAGATCGACGCGATGCTGGCCACCATCTCGTCGGACTTCCTCTCCTGGGCCAAGGGCTTCGTCCCGCTCATCGTCGGCGCCGCCGCCGACAACCCCTCCGCCGCGGAGACGCTGGCGCGGACCTTCTTCGCCATGGACCCGCGCGTGGCGGACGCGCTGGCGCGCATGATCTTCCTCGGCGACAACCGCGGCGTGCTGGGCCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCCCGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGTGACCGTCGACTCGGCCGGCCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGATACTCGACGCTGTGCTCGCCGAGGAGGAGGAGGCGGCCGCCAAGGGCGGCGGCGTCGCCATCGTCATGGAGGAGAGGGGCAGCCTCGCCGCCGTCGGCGAGGTGGAGGTGAAGGGCGACATCGATGTGGCCACGTAGATAGCTAGCCACTTGCCACTTCCATTGTTCCATGCTTACCGGCCGGTAACCGGTGCCAGCCGGTCAACGACGGCTATAAGATTACTTGATGTTCGTGTTTGGGTCGTCATGTACGTGGTTCATATTAAATTCGATAAATTAATCGTTTATGGATT]
[+] EMBL AK066814 [AGTACACCACCTCTCTCCCTGGTCTTGTTTGGCTAGCTAAGCTAGTGAGAGATGCCGCCACTGAATCCAAGAGTGGTTGGGTGTGGGGAGAGGACACTGGTCCTCTCCCATGGCTATGGAGGCAGCCAGGCCATCTGGGACAGGGTGCTGCCTCATCTCGCCGAGACGAACAAGGTCGTCCTGTTCGACTGGGACTTCTCCGGCGGCGGCGGCGACGGCGAGAAGGCGGCGGCGGAGGAGGAGGAGGAGTACACGTTCGAGGGGTTCGCGGACGAGCTGGTGGCGCTGATGGAGGAGATGGGGGTGAGCGGGGCGGTGTACGTGGGGCATTCCATGGCCGGCATGATCGGCTGCATTGCCTCCATCAACCGCCCCGGCCTCTTCACCCACCTCGTGCTCGTCGGCGCCTCCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGCCGGAGATCGACGCGATGCTGGCCACCATCTCGTCGGACTTCCTCTCCTGGGCCAAGGGCTTCGTCCCGCTCATCGTCGGCGCCGCCGCCGACAACCCCTCCGCCGCGGAGACGCTGGCGCGGACCTTCTTCGCCATGGACCCGCGCGTGGCGGACGCGCTGGCGCGCATGATCTTCCTCGGCGACAACCGCGGCGTGCTGGGCCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCCCGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGTGACCGTCGACTCGGCCGGCCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGATACTCGACGCTGTGCTCGCCGAGGAGGAGGAGGCGGCCGCCAAGGGCGGCGGCGTCGCCATCGTCATGGAGGAGAGGGGCAGCCTCGCCGCCGTCGGCGAGGTGGAGGTGAAGGGCGACATCGATGTGGCCACGTAGATAGCTAGCCACTTGCCACTTCCATTGTTCCATGCTTACCGGCCGGTAACCGGTGCCAGCCGGTCAACGACGGCTATAAGATTACTTGATGTTCGTGTTTGGGTCGTCATGTACGTGGTTCATATTAAATTCGATAAATTAATCGTTTATGGATT]
consensusID : consensus_162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[TACACATTTCGAGGGGTCCGGGACGACTGTGCGCTNATTGGAGGATATGGGGGTNACCCAGGGCCGGTGTACAGTGGGCACTCCATGCCGCCATGATCGGCTCGCATTCGCCTCCATCAAACCAGCCCCGGCCTCTTTCACCACACACTCGTGCTCGTCGGCGCCTCCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGGCGGAGATCGACGCAGATCTGCCCACCATCTCGTCGGACTTCCTCTCCTGGCACAAGGGCTTCGTCCCGCTCATCGTCGGCAGCACGCCAGCCAGACAACCCCTCCCCGCGGAGACGCTGGCNCGGACCTTCTTCNCCATGGACCCGCGCGTGGCGACGCGCTGGCGCGCATGATCTTCCTCGGCGACAACCGCGGCAGTGCTGGCCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCCCGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGTGACCGTCGACTCGGCCGCCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGATACTCGACGCTGTGCTCGCCGAGGAG]
[-] EMBL BM422162 [TACACATTTCGAGGGGTCCGGGACGACTGTGCGCTNATTGGAGGATATGGGGGTNACCCAGGGCCGGTGTACAGTGGGCACTCCATGCCGCCATGATCGGCTCGCATTCGCCTCCATCAAACCAGCCCCGGCCTCTTTCACCACACACTCGTGCTCGTCGGCGCCTCCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGGCGGAGATCGACGCAGATCTGCCCACCATCTCGTCGGACTTCCTCTCCTGGCACAAGGGCTTCGTCCCGCTCATCGTCGGCAGCACGCCAGCCAGACAACCCCTCCCCGCGGAGACGCTGGCNCGGACCTTCTTCNCCATGGACCCGCGCGTGGCGACGCGCTGGCGCGCATGATCTTCCTCGGCGACAACCGCGGCAGTGCTGGCCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCCCGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGTGACCGTCGACTCGGCCGCCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGATACTCGACGCTGTGCTCGCCGAGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_162#0 AGTACACCACCTCTCTCCCTGGTCTTGTTTGGCTAGCTAAGCTAGTGAGAGATGCCGCCA 60
consensus_162#1 ------------------------------------------------------------
consensus_162#0 CTGAATCCAAGAGTGGTTGGGTGTGGGGAGAGGACACTGGTCCTCTCCCATGGCTATGGA 120
consensus_162#1 ------------------------------------------------------------
consensus_162#0 GGCAGCCAGGCCATCTGGGACAGGGTGCTGCCTCATCTCGCCGAGACGAACAAGGTCGTC 180
consensus_162#1 ------------------------------------------------------------
consensus_162#0 CTGTTCGACTGGGACTTCTCCGGCGGCGGCGGCGACGGCGAGAAGGCGGCGGCGGAGGAG 240
consensus_162#1 ------------------------------------------------------------
consensus_162#0 GAGGAGGAGTACACGTT-CGAGGGGTTCGCGGACGAGCTGGTGGCGCTGAT-GGAGGAGA 298
consensus_162#1 ---------TACACATTTCGAGGGGTCCG-GGACGA-CTGT--GCGCTNATTGGAGGATA 47
***** ** ******** ** ****** *** ***** ** ****** *
consensus_162#0 TGGGGGTGAGC--GGGGCGGTGTACGTGGGGCATTCCATGGCCGGCATGATCGGCT-GCA 355
consensus_162#1 TGGGGGTNACCCAGGGCCGGTGTACAGTGGGCACTCCATG-CCGCCATGATCGGCTCGCA 106
******* * * *** ******** ***** ****** *** *********** ***
consensus_162#0 TT-GCCTCCATCAACC--GCCCCGGCCTCTTCACCCAC---CTCGTGCTCGTCGGCGCCT 409
consensus_162#1 TTCGCCTCCATCAAACCAGCCCCGGCCTCTTTCACCACACACTCGTGCTCGTCGGCGCCT 166
** *********** * ************* **** *******************
consensus_162#0 CCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGCCGGAGATCGACG 469
consensus_162#1 CCCCGAGGTACATCAACTCGGATGACTACGAGGGCGGCTTCGACGAGGCGGAGATCGACG 226
*********************************************** ************
consensus_162#0 CGATGCTGGCCACCATCTCGTCGGACTTCCTCTCCTGGGCCAAGGGCTTCGTCCCGCTCA 529
consensus_162#1 CAGATCTGCCCACCATCTCGTCGGACTTCCTCTCCTGGCACAAGGGCTTCGTCCCGCTCA 286
* *** ***************************** ********************
consensus_162#0 TCGTCGGCGCCGCC---GCC-GACAACCCCTCCGCCGCGGAGACGCTGGCGCGGACCTTC 585
consensus_162#1 TCGTCGGCAGCACGCCAGCCAGACAACCCCTCC-CCGCGGAGACGCTGGCNCGGACCTTC 345
******** * * *** ************ **************** *********
consensus_162#0 TTCGCCATGGACCCGCGCGTGGCGGACGCGCTGGCGCGCATGATCTTCCTCGGCGACAAC 645
consensus_162#1 TTCNCCATGGACCCGCGCGTGGCG-ACGCGCTGGCGCGCATGATCTTCCTCGGCGACAAC 404
*** ******************** ***********************************
consensus_162#0 CGCGGC-GTGCTGGGCCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCC 704
consensus_162#1 CGCGGCAGTGCTGG-CCGCGTCGCCGCGCCGTGCACCCTCGTGCACGCCTCCGGCGACCC 463
****** ******* *********************************************
consensus_162#0 CGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGT 764
consensus_162#1 CGCCGCGCCGCCGTGCGTCGGGCGCTACATGGAGGGGCGCATCGGGCGCGCCGCCTTGGT 523
************************************************************
consensus_162#0 GACCGTCGACTCGGCCGGCCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGAT 824
consensus_162#1 GACCGTCGACTCGGCCG-CCACTTCCCGCAGCTCGTGGCGCCCGACGAGATGCTCCGGAT 582
***************** ******************************************
consensus_162#0 ACTCGACGCTGTGCTCGCCGAGGAGGAGGAGGCGGCCGCCAAGGGCGGCGGCGTCGCCAT 884
consensus_162#1 ACTCGACGCTGTGCTCGCCGAGGAG----------------------------------- 607
*************************
consensus_162#0 CGTCATGGAGGAGAGGGGCAGCCTCGCCGCCGTCGGCGAGGTGGAGGTGAAGGGCGACAT 944
consensus_162#1 ------------------------------------------------------------
consensus_162#0 CGATGTGGCCACGTAGATAGCTAGCCACTTGCCACTTCCATTGTTCCATGCTTACCGGCC 1004
consensus_162#1 ------------------------------------------------------------
consensus_162#0 GGTAACCGGTGCCAGCCGGTCAACGACGGCTATAAGATTACTTGATGTTCGTGTTTGGGT 1064
consensus_162#1 ------------------------------------------------------------
consensus_162#0 CGTCATGTACGTGGTTCATATTAAATTCGATAAATTAATCGTTTATGGATT 1115
consensus_162#1 ---------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||