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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1621#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 906 fasta sequence
[CTGTTGTGTTTATAAAGAGGTTAAATTCATATATGTTAGTGGACAAAATGATATGCAACTCAGGGAAAAGGCTGAAGCAGCATATCAAGCAGATTACAAGGAAGGCCCATTTTCATTTCTGCATTGTTGGAACATTCTTCGTGACCAACCAAAGTGGCATTCTTACTTGGAGGAACTTGAGAAGCCAAACAAACCAAAGATGGATGATTAAGTGGAAGTGATGGAGCAAATGTCCACTCCTAACAGTCCTGAAGATATTAAACGTCCAATAGGAACAAAAACTGCTAAGGCGCAACGTAATGGTAAAGGCAGACGCAAAAGGAAGGCAAAGGTTTATCTATCAGATACTGATGATGAAATTGACAAGCTTAAAGAAGTTCAGGAGATGGCAAATAAAGGTCGTGATGAACTACTAGAGACTCAGAGGCGTGTTGCTAGTGATAACCTTGAATCAAAAAAGTTAGCGCACCTTGCAGCCATGGAGCACAAGGAGGCTGTTATGTTGGAAACATATCGGTCTCTCATGTTACAAGATACAAAAGATATTCCTGATGATGTTAGATCCGAGCATTTGATGGCATTGAAGTGTATGAGGGAGAAGTTGTTTCCGTAATACTAAGGGACAATGGAAAACTTTGGTGCTAGCTTTTTGGTGCTTTCTGCTATGGTTTTGAGAGGTAGTGAAGATGCTCAATTTGGAAGGCTGGCAGCTTGTTTTGGTTCTGCTTGAGAAAGATAATCTAGTTATAAAGTAATTTTTAGTAATTCGCTGGTGTCATGTAAGAACACTTGTGTTGTTACCATCTATTGGCAGTATGGATCGTTGTAATGGCCTAATTTCTTTTGTCGAATGTTGATGTATGGATCATTGCAACAGACTAAGTTATTTTGTCGGTCTATGAATTA]
[+] EMBL AK119927 [CTGTTGTGTTTATAAAGAGGTTAAATTCATATATGTTAGTGGACAAAATGATATGCAACTCAGGGAAAAGGCTGAAGCAGCATATCAAGCAGATTACAAGGAAGGCCCATTTTCATTTCTGCATTGTTGGAACATTCTTCGTGACCAACCAAAGTGGCATTCTTACTTGGAGGAACTTGAGAAGCCAAACAAACCAAAGATGGATGATTAAGTGGAAGTGATGGAGCAAATGTCCACTCCTAACAGTCCTGAAGATATTAAACGTCCAATAGGAACAAAAACTGCTAAGGCGCAACGTAATGGTAAAGGCAGACGCAAAAGGAAGGCAAAGGTTTATCTATCAGATACTGATGATGAAATTGACAAGCTTAAAGAAGTTCAGGAGATGGCAAATAAAGGTCGTGATGAACTACTAGAGACTCAGAGGCGTGTTGCTAGTGATAACCTTGAATCAAAAAAGTTAGCGCACCTTGCAGCCATGGAGCACAAGGAGGCTGTTATGTTGGAAACATATCGGTCTCTCATGTTACAAGATACAAAAGATATTCCTGATGATGTTAGATCCGAGCATTTGATGGCATTGAAGTGTATGAGGGAGAAGTTGTTTCCGTAATACTAAGGGACAATGGAAAACTTTGGTGCTAGCTTTTTGGTGCTTTCTGCTATGGTTTTGAGAGGTAGTGAAGATGCTCAATTTGGAAGGCTGGCAGCTTGTTTTGGTTCTGCTTGAGAAAGATAATCTAGTTATAAAGTAATTTTTAGTAATTCGCTGGTGTCATGTAAGAACACTTGTGTTGTTACCATCTATTGGCAGTATGGATCGTTGTAATGGCCTAATTTCTTTTGTCGAATGTTGATGTATGGATCATTGCAACAGACTAAGTTATTTTGTCGGTCTATGAATTA]
consensusID : consensus_1621#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 840 fasta sequence
[TTGCTGTGCTTATAAGGAGGTGAAATCTATCTATGTTAGTGGACAAAATGAACTACAATTGATGGAGAAGGTCCATGCAACATATGAAGCAGATTACAAGGAAGGCCAATTTACATTTCTGCATTGTTGGAAAGCTCTCCGTGACCAACCAAAGTGGCATGCTTACTTGGAGGAACTTGAGAAGCCAAACAAAACAAAGTCAGATAATGAAGTGGAAGTAAGGGAACTTACATCCACTCCTAATAGCCCTGAAGATATTATACGTCCTGAAGGAACCAAAGCTGCTAAGGCGCGGCGTAATGGTAAAGACAAACGCAAAAGGAAGGCAAAGGTTTATCTATCGGATATGGATGATGAGATTGACAAGCCTAAAGAAGTTCAGAACATGGCAGATAAAGGTCGCGATGAGCTACTGGAGACTCAGAGGCGTGTTTCTAGTGAGAATCTTGAATCAAAAAGGTTAGCTCACCTGGCAGCCATGGAGCACAAGGAGGCGGTTATGTTGGAAACATATCGGGCTCTCATGTTGCAAGATACAAAAGATATGCCTGATGATGTCAGATTTGAGCATGTGATGGCATTGAAGAGTATGAGGGAAAAGTTGTTTCCTAAAACTAAGGTATCGAAGATGCTCATTTTGGCTGCTTGTTTTGGCAGTGCTTCAGCAAGAGAAGCTACTTATTACATAATTTTCAGTAATCCACCGATTTTATCAAAACAGAACTTGTGTTCTAACTATCTACTCAGTATGTCGTTGTATGGGTCACTGTTATGGCCTATGAATGATGTATGGATCATTGTAATAGACTAAGTTCTTTTGTCAGTCTATGAACTAATTAG]
[+] EMBL AK103644 [TTGCTGTGCTTATAAGGAGGTGAAATCTATCTATGTTAGTGGACAAAATGAACTACAATTGATGGAGAAGGTCCATGCAACATATGAAGCAGATTACAAGGAAGGCCAATTTACATTTCTGCATTGTTGGAAAGCTCTCCGTGACCAACCAAAGTGGCATGCTTACTTGGAGGAACTTGAGAAGCCAAACAAAACAAAGTCAGATAATGAAGTGGAAGTAAGGGAACTTACATCCACTCCTAATAGCCCTGAAGATATTATACGTCCTGAAGGAACCAAAGCTGCTAAGGCGCGGCGTAATGGTAAAGACAAACGCAAAAGGAAGGCAAAGGTTTATCTATCGGATATGGATGATGAGATTGACAAGCCTAAAGAAGTTCAGAACATGGCAGATAAAGGTCGCGATGAGCTACTGGAGACTCAGAGGCGTGTTTCTAGTGAGAATCTTGAATCAAAAAGGTTAGCTCACCTGGCAGCCATGGAGCACAAGGAGGCGGTTATGTTGGAAACATATCGGGCTCTCATGTTGCAAGATACAAAAGATATGCCTGATGATGTCAGATTTGAGCATGTGATGGCATTGAAGAGTATGAGGGAAAAGTTGTTTCCTAAAACTAAGGTATCGAAGATGCTCATTTTGGCTGCTTGTTTTGGCAGTGCTTCAGCAAGAGAAGCTACTTATTACATAATTTTCAGTAATCCACCGATTTTATCAAAACAGAACTTGTGTTCTAACTATCTACTCAGTATGTCGTTGTATGGGTCACTGTTATGGCCTATGAATGATGTATGGATCATTGTAATAGACTAAGTTCTTTTGTCAGTCTATGAACTAATTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1621#0 CTGTTGTGTTTATAAAGAGGTTAAATTCATATATGTTAGTGGACAAAATGATATGCAACT 60
consensus_1621#1 TTGCTGTGCTTATAAGGAGGTGAAATCTATCTATGTTAGTGGACAAAATGAACTACAATT 60
** **** ****** ***** **** ** ******************** * *** *
consensus_1621#0 CAGGGAAAAGGCTGAAGCAGCATATCAAGCAGATTACAAGGAAGGCCCATTTTCATTTCT 120
consensus_1621#1 GATGGAGAAGGTCCATGCAACATATGAAGCAGATTACAAGGAAGGCCAATTTACATTTCT 120
* *** **** * *** ***** ********************* **** *******
consensus_1621#0 GCATTGTTGGAACATTCTTCGTGACCAACCAAAGTGGCATTCTTACTTGGAGGAACTTGA 180
consensus_1621#1 GCATTGTTGGAAAGCTCTCCGTGACCAACCAAAGTGGCATGCTTACTTGGAGGAACTTGA 180
************ *** ********************* *******************
consensus_1621#0 GAAGCCAAACAAACCAAAGATGGATGATTAAGTGGAAGTGATGGAGCAAATGTCCACTCC 240
consensus_1621#1 GAAGCCAAACAAAACAAAGTCAGATAATGAAGTGGAAGTAAGGGAACTTACATCCACTCC 240
************* ***** *** ** ********** * *** * * ********
consensus_1621#0 TAACAGTCCTGAAGATATTAAACGTCCAATAGGAACAAAAACTGCTAAGGCGCAACGTAA 300
consensus_1621#1 TAATAGCCCTGAAGATATTATACGTCCTGAAGGAACCAAAGCTGCTAAGGCGCGGCGTAA 300
*** ** ************* ****** ****** *** ************ *****
consensus_1621#0 TGGTAAAGGCAGACGCAAAAGGAAGGCAAAGGTTTATCTATCAGATACTGATGATGAAAT 360
consensus_1621#1 TGGTAAAGACAAACGCAAAAGGAAGGCAAAGGTTTATCTATCGGATATGGATGATGAGAT 360
******** ** ****************************** **** ******** **
consensus_1621#0 TGACAAGCTTAAAGAAGTTCAGGAGATGGCAAATAAAGGTCGTGATGAACTACTAGAGAC 420
consensus_1621#1 TGACAAGCCTAAAGAAGTTCAGAACATGGCAGATAAAGGTCGCGATGAGCTACTGGAGAC 420
******** ************* * ****** ********** ***** ***** *****
consensus_1621#0 TCAGAGGCGTGTTGCTAGTGATAACCTTGAATCAAAAAAGTTAGCGCACCTTGCAGCCAT 480
consensus_1621#1 TCAGAGGCGTGTTTCTAGTGAGAATCTTGAATCAAAAAGGTTAGCTCACCTGGCAGCCAT 480
************* ******* ** ************* ****** ***** ********
consensus_1621#0 GGAGCACAAGGAGGCTGTTATGTTGGAAACATATCGGTCTCTCATGTTACAAGATACAAA 540
consensus_1621#1 GGAGCACAAGGAGGCGGTTATGTTGGAAACATATCGGGCTCTCATGTTGCAAGATACAAA 540
*************** ********************* ********** ***********
consensus_1621#0 AGATATTCCTGATGATGTTAGATCCGAGCATTTGATGGCATTGAAGTGTATGAGGGAGAA 600
consensus_1621#1 AGATATGCCTGATGATGTCAGATTTGAGCATGTGATGGCATTGAAGAGTATGAGGGAAAA 600
****** *********** **** ****** ************** ********** **
consensus_1621#0 GTTGTTTCCGTAATACTAAGGGACAATGGAAAACTTTGGTGCTAGCTTTTTGGTGCTTTC 660
consensus_1621#1 GTTGTTTCC-TAAAACTAAGG--------------------------------------- 620
********* *** *******
consensus_1621#0 TGCTATGGTTTTGAGAGGTAGTGAAGATGCTCAATTTGGAAGGCTGGCAGCTTGTTTTGG 720
consensus_1621#1 ------------------TATCGAAGATGCTCATTTTGG--------CTGCTTGTTTTGG 654
** *********** ***** * ***********
consensus_1621#0 TTCTGCTTGAGAAAGATAATCTAGTTATAAAGTAATTTTTAGTAATTCGCTGGTGTCATG 780
consensus_1621#1 CAGTGCTTCAGCAAGAGAAGCTACTTATTACATAATTTTCAGTAATCCACCGATTTTATC 714
***** ** **** ** *** **** * ******* ****** * * * * * **
consensus_1621#0 TAAG-AACACTTGTGTTGTTACCATCTATTGGCAGTATGGATCGTTGTAATGGCCTAATT 839
consensus_1621#1 AAAACAGAACTTGTGTTCTAACTATCTACT--CAGTATG--TCGTTGTATGGGTC--ACT 768
** * ********* * ** ***** * ******* ******** ** * * *
consensus_1621#0 TCTTTTGTCGAATGTTGATGTATGGATCATTGCAACAGACTAAGTTATTTTGTCGGTCTA 899
consensus_1621#1 GTTATGGCCTATGAATGATGTATGGATCATTGTAATAGACTAAGTTCTTTTGTCAGTCTA 828
* * * * * ***************** ** ********** ******* *****
consensus_1621#0 TGAATTA----- 906
consensus_1621#1 TGAACTAATTAG 840
**** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||