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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16211#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 27 consensus length = 1791 fasta sequence
[GGTTCTTCCCATTTGGCGGTTGGCAGCGGAAGGAAAGGAGAGAAAAGAGGGGGGGAAGGCCAGGCCAACCGGAGCGAAGGAAAGCCAGGGAGTAATAAATCGAGAGAGAAACGGCCAAAAAAGAAACCAACAACAAGA-AAGAAATCAAGCAAGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGA-NGG-A-TG-ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG-TCCCGATCCCT-GATCCAGGTGGTAACT-ATGGACGTAGCAAGCCC-GGGCCCCC-AGCCCC-TTCGCGTTCTTCCCCCACCAGC-AGAAATC-TGCCAATTGCAGTACCGGCAATT-CCCCTTGATGAAATAAA-GGGAATAACCAAGAAC-TTC-AGCAGTGATGC-TCTCATCGGA-GAAGGCTCGTACGCCAGAGTTTTCTTTGGTGTGCTGAGAGATGGCAGGAGATCTGCGGTGAAGAAGCTCGACTCCAGCAAACAGCCTGATCAAGAATTCCTTGTGCAGGTTTCAGCCGTTTCACGACTGAAGCATGAGAATATTATCCAACTTATCGGATATTGCGCTGGAGGGAGCATCCGTGTTCTTGCTTATGAGTATGCACCGAGGGGCTCCTTGCATGACATTCTCCATGGTAAAAAGGGTGTGAAGGGAGCTCAGCCAGGACCAGCTCTATCATGGATGCAGCGAGTGAAGATTGCCTTGAGTGCTGCAAAGGGGCTTGAGTTCCTGCACGAGAAGGCGGAGCCTCGTGTCGTCCACCGTGACATCAAATCCAGCAACATTATGCTCTTTGACAACGATGTTGCGAAAGTAGGAGACTTCGATGTATCCAATCAGTCCCCGGACATGGCGGCTCGCCTCCANTCCACTCGTGTTCTTGGGCA-CTTCGGTTATCATGCTCCTGAGTACGCGATGACA-GGGCAGC-TTAGCACGAAGAGCGATGTCTATAGCTTCGGAGTCGTGTTGCTGGAGCTTTTAACTGGTCGCAAACCGGTCGATCATACGCTGCCCCGTGGCCAGCAGAGTCTTGTGACATGGGCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGATGGCTGCCGTA-GCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG-AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAAAAACTTCAAAAAAAAACAGACAAGTTTTGTTGTTCTGCGTACAATGGGCAGATTAATAATTC]
[+] EMBL AK065231 [GGTTCTTCCCATTTGGCGGTTGGCAGCGGAAGGAAAGGAGAGAAAAGAGGGGGGGAAGGCCAGGCCAACCGGAGCGAAGGAAAGCCAGGGAGTAATAAATCGAGAGAGAAACGGCCAAAAAAGAAACCAACAACAAGA AAGAAATCAAGCAAGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGAGCGG A TG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGCCCCC AGCCCC TTCGCGTTCTCCCCCCACCAGC AGAAATC TGCCAATTGCAGTACCGGCAATT CCCCTTGATGAAATAAA GGGAATAACCAAGAAC TTC AGCAGTGATGC TCTCATCGGA GAAGGCTCGTACGCCAGAGTTTTCTTTGGTGTGCTGAGAGATGGCAGGAGATCTGCGGTGAAGAAGCTCGACTCCAGCAAACAGCCTGATCAAGAATTCCTTGTGCAGGTTTCAGCCGTTTCACGACTGAAGCATGAGAATATTATCCAACTTATCGGATATTGCGCTGGAGGGAGCATCCGTGTTCTTGCTTATGAGTATGCACCGAGGGGCTCCTTGCATGACATTCTCCATGGTAAAAAGGGTGTGAAGGGAGCTCAGCCAGGACCAGCTCTATCATGGATGCAGCGAGTGAAGATTGCCTTGAGTGCTGCAAAGGGGCTTGAGTTCCTGCACGAGAAGGCGGAGCCTCGTGTCGTCCACCGTGACATCAAATCCAGCAACATTATGCTCTTTGACAACGATGTTGCGAAAGTAGGAGACTTCGATGTATCCAATCAGTCCCCGGACATGGCGGCTCGCCTCCACTCCACTCGTGTTCTT GGCACCTTCGGTTATCATGCTCCTGAGTACGCGATGACA GGGCAGC TTAGCACGAAGAGCGATGTCTATAGCTTCGGAGTCGTGTTGCTGGAGCTTTTAACTGGTCGCAAACCGGTCGATCATACGCTGCCCCGTGGCCAGCAGAGTCTTGTGACATGGGCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGATGGCTGCCGTA GCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCACTTTTAGCTTCCACTGTCACCAGACAAGTTTTGTTGTTCTGCGTACAATGGGCAGATTAATAATTC]
[+] EMBL C72356 [ AGAGATGAAATCAAGCAAGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGA NGG A TGAATGTCGGCNAGAAGAAGAAGCGCGACGATCCTTACG TNCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGgncc ]
[+] EMBL C71726 [ AAGCAAGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCNCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTNATGCTGCGGA NGGAA TG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGNCCCC AGCCCT TTCGGGTT TTCCCCCACCAGC AGAAATT TGCCAATTTCAGTACCGGNAATT CCCTTGATG AATAAA GGG ATAACCAAG AC TTC AGCAGTNATGC TCTCAT ]
[+] EMBL C72855 [ AGCAAGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGA NGG A TG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGCCCCC AGCCCC TTCGCGTTCTCCCCCCAACAGC AGAAATC TGCCAATTGCAGTACCGGCAATT CCCTTGATGAAATAAA GGGAATAACCAAGAAC TTC AGCAGTGATGC TCT ]
[+] EMBL C72391 [ GCAAGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGA NGG ATTG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCNCGATCCCTGGATCCAGGTGGTAACTAATNGACGTAGCAAGCCC GGGGNCCC A ]
[+] EMBL AU091891 [ GCAAGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGA CGG A TG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATTCCT GATCCAAGTNGTAACT ATNGACGTAGCAAGCCG GGG CCC ANCCCT TTTG GTT TTTCCCCACCAGC AG AATT TGCC ATTGCAGTACCGG GATT CCCTTGATG AATAAAng ]
[+] EMBL C74626 [ GCAAGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGAGCGG A TG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGCCCCC AGCCCCTTTCGCGTTCTTCNCCCACCAGC AGANATC TGCCAATTNCAGTACCGGCAATT CCCCTTGATGAAATAAA GGGAATAACCAAGAACTTTA AGCAGTGATGCTTTTAATCGGAGGAAGGCTTGTAC ]
[+] EMBL C22500 [ CAAGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGA NGG ATTG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGCCCCCAAGCCCC TTCGCGTTCTTCCCCCANCAGC AGAAATC TGCCAATTGCAGTACCGGCAAAT TCCCTTGATGNAATAAA GGG ATAACCAAG AN TTC AGCAGTGATGN T TCATCGGA GAAG ]
[+] EMBL AU063915 [ CAAGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGA NGG A TG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACGATCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGCCCCC AGCCCC TTCGCGTTCTCCCCCCANCAGC AGAAATC TGCCAATTGCAGTACCGGCAATTNCCCCTTGATGAAATAAAGGGGAATAACCAAGAAT TTN AGCAGTGATGC TCTCATGGGA AAA ]
[+] EMBL AU064905 [ CAAGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCNCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGA NGG A TG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGCCCCCAAGCCCC TTCGNGTTC TCCCCCACCAGCAAGAAATC TGCCAATTGCAGTACCGGCAATT TCCCTTGATGAAATAAA GGGAATAACCAAGGAC TTtaag ]
[+] EMBL C71976 [ AAGCAAGANGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCTTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTNATGCTGCGGA NGG A TG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGCCCCC AG CCC TTCGNGTTC TCCCCCACCAGC AG AATT TGCCAATTGCAGTACCGGNAATT CCCCTTGATGNAAT ]
[+] EMBL AU108278 [ AGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCNCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGA NGG A TG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGCCCCC AGCCCC TTCGCGTTCTCCCCCCACCAGC AGAAATC TGCCAATTGCAGTACCGGCAATT CCCCTTGATGAAATA ]
[+] EMBL C98662 [ AGCAAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGA GGG ATTG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGCCCCC AGCCCT TTCGCGTTCTTCCCCCACCAGC AGAAATCTTNCCAATTGCAGTACCGGCAATT NCCCTTGATGAAATAAA GGG ATAACCAAG AC TTCAAGCAGTGATG TCTCATC GA GAA GCTCG ACG CAGA ]
[+] EMBL OSS13927A [ AAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTCATGCTGCGGA NGGAA TG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCCGGGGCCCCN AGCCCC TTCGGGTTCTT ]
[+] EMBL AU165320 [ AAGAAGAGACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCCTCTCCTCTCGATCTCCATTCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCTTTTNATGCTGCGGA NGG ATTG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGCCCCC AGCCCC TTCGCGTTC TCCCCCACCAGC AGAATTT TGCCAATTGCAGT ]
[+] EMBL C72023 [ GACGAGACGAGGGAGAGAAGGAGAAGAGGGGGCCGGCCGCGGGCTTCGTCNTNTTCCTCCCCCCCTCTNTNTCCTCTCCTCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTCTCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCNATATGGGTTGCTTTTAATGCTGCGGA NGG A TG ATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACG TCCCGATCCCT GATCCAGGTGGTAACT ATGGACGTAGCAAGCCC GGGCCCCC AG CCC TTCG GTTC TCCCCCACCAGC AGAAATC TNCCAATTNCAGTACCGGNAATT TCCCTTGATG AATAAA GGGATTAACCAGGAct ]
[+] EMBL AU108281 [ tTCGCTTCCANTCCACTCGTGTTCTTGGGCA CTTCGGTTATCATGCTCCTGAGTACGCGATGACA GGGCAGN TTAGCACGAAGAGCGATGTCTATAGCTTCGGAGTCGTGTTGCTGGAGCTTTTAACTGGTCGCAAACCGGTCGATCATACGCTGCCCCGTGGCCAGCAGAGTCTTGTGACATGGGCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGATGGCTGCCGTT ANTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAA ]
[+] EMBL AU108280 [ TCCANTCCAATCGTGTTCTTGGGCA CTTCGGTTATCATGCTCCTGAGTACGCGATGACA GGGCAGC TTAGCACGAAGAGCGATGTCTATAGCTTCGGAGTCGTGTTGCTGGAGCTTTTAACTGGTCGCAAACCGGTCGATCATACGCTGCCCCGTGGCCAGCAGAGTCTTGTGACATGGGCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGATGGCTGCCGTA G TGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCGATCCNGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCACTTTTAGCTTCAAAAAAA ]
[+] EMBL AU108282 [ CTTGGGCA CTTCGGTTATCATGCTCCTGAGTACGCGATGACA GGGCAGC TTAGCACGAAGAGCGATGTCTATAGCTTCGGAGTCGTGTTGCTGGAGCTTTTAACTGGTCGCAAACCGGTCGATCATACGCTGCCCCGTGGCCAGCAGAGTCTTGTGACATGGGCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGATGGCTGCCGTA NTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAAAA ]
[+] EMBL AU108279 [ TGAGTACGCGATGACAGGGGCAGCTTTACCNCGAAGAGCGATNTCTATAGCTTCGGAGTCGTGTTGCTGGAGCTTTTAACTGGTCGCAAACCGGTCGATCATACGCTGCCCCGTGGCCAGCAGAGTCTTGTGACATGGGCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTNTTGCCAAGATGGCTGCCGTA NTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTNTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCNTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU093886 [ ATGTCTATAGCTTCGGAGTCGTGTTGCTGGAGCTTTTAACTGNTCGCAAACCGGTNGATCATACGCTNCCCCGTGGCCAGCAGAGTCTTGTGACATGGGCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGATGGCTGCCGTA NTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU166986 [ GCAAACCGGTCGATCATACGCTGCCCCGTGGCCAGCAGAGTCTTGTGACATGGGCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGATGGCTGCCGTA GCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCaaaaa ]
[+] EMBL AU166996 [ TGCCAAGATGGCTGCCGTA GCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAAAA ]
[+] EMBL AU166997 [ CCAAGATGGCTGCCGTA GCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAAAA ]
[+] EMBL AU225928 [ gccgcTGGCTGCCGTATGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAGTATGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGagcgg ]
[+] EMBL C98499 [ CTGCCGTA NCTGCGCTGTGCGTGNAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCNTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCNATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAAAA ]
[+] EMBL C98847 [ nGCCCAACATGAGCATCGTCGTCAA GCTCTG ACCCACTCCTCAACAGCCGCCCGAACAATCGCCCCGCTTCCTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAG AGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCNTGCTTGTCCAAAAAAAAnnn ]
consensusID : consensus_16211#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 389 fasta sequence
[GGCGGATTCNGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCCGAACAATCGCCCCGCCTNCCTTCACCGACGCCGGCGAGCGACCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAGAGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCACTTTTAAAAA]
[+] EMBL C98425 [GGCGGATTCNGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCCTCAACAGCCGCCCCGAACAATCGCCCCGCCTNCCTTCACCGACGCCGGCGAGCGACCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTCAGTGGAAATGAAGAGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCACTTTTAAAAA]
[-] EMBL AA750315 [ CCAAATGTGTAAAAATTCAGTGGAAATGAAGAGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTNGATCTCCAGACTCCTGTTGCTGTAAATTGTNGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCT ]
consensusID : consensus_16211#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence
[AATGTGTAAAAATTCAGTGGAAATGAAGAGGGTAGCTNTGCTGCTGCCTGTCTTGTTNTTGCCNCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCNTGATTATGTGTTCCTCTCGNCCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU093972 [AATGTGTAAAAATTCAGTGGAAATGAAGAGGGTAGCTNTGCTGCTGCCTGTCTTGTTNTTGCCNCGATCTCCAGACTCCTGTTGCTGTAAATTGTCGCAATCCCTCNTGATTATGTGTTCCTCTCGNCCTCTTGTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16211#0 GGTTCTTCCCATTTGGCGGTTGGCAGCGGAAGGAAAGGAGAGAAAAGAGGGGGGGAAGGC 60
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 CAGGCCAACCGGAGCGAAGGAAAGCCAGGGAGTAATAAATCGAGAGAGAAACGGCCAAAA 120
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 AAGAAACCAACAACAAGAAAGAAATCAAGCAAGCAAGAAGAGACGAGACGAGGGAGAGAA 180
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 GGAGAAGAGGGGGCCGGCCGCGGGCGTCGTCGTGTTCCTCCCCCCCTCTCTCTCCTCTCC 240
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 TCTCCTCTCGATCTCCATCCTTCCTTCCATCCATTCCTCCCCGCACCCTTCGCATTGCTC 300
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 TCGTCGTCTCGATTCGGTCGAGGATCTCCAGGAAAAGAGGAGGAAGCGATATGGGTTGCT 360
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 TTTCATGCTGCGGANGGATGATGTCGGCAAGAAGAAGAAGCGCGACGATCCTTACGTCCC 420
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 GATCCCTGATCCAGGTGGTAACTATGGACGTAGCAAGCCCGGGCCCCCAGCCCCTTCGCG 480
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 TTCTTCCCCCACCAGCAGAAATCTGCCAATTGCAGTACCGGCAATTCCCCTTGATGAAAT 540
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 AAAGGGAATAACCAAGAACTTCAGCAGTGATGCTCTCATCGGAGAAGGCTCGTACGCCAG 600
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 AGTTTTCTTTGGTGTGCTGAGAGATGGCAGGAGATCTGCGGTGAAGAAGCTCGACTCCAG 660
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 CAAACAGCCTGATCAAGAATTCCTTGTGCAGGTTTCAGCCGTTTCACGACTGAAGCATGA 720
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 GAATATTATCCAACTTATCGGATATTGCGCTGGAGGGAGCATCCGTGTTCTTGCTTATGA 780
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 GTATGCACCGAGGGGCTCCTTGCATGACATTCTCCATGGTAAAAAGGGTGTGAAGGGAGC 840
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 TCAGCCAGGACCAGCTCTATCATGGATGCAGCGAGTGAAGATTGCCTTGAGTGCTGCAAA 900
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 GGGGCTTGAGTTCCTGCACGAGAAGGCGGAGCCTCGTGTCGTCCACCGTGACATCAAATC 960
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 CAGCAACATTATGCTCTTTGACAACGATGTTGCGAAAGTAGGAGACTTCGATGTATCCAA 1020
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 TCAGTCCCCGGACATGGCGGCTCGCCTCCANTCCACTCGTGTTCTTGGGCACTTCGGTTA 1080
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 TCATGCTCCTGAGTACGCGATGACAGGGCAGCTTAGCACGAAGAGCGATGTCTATAGCTT 1140
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 CGGAGTCGTGTTGCTGGAGCTTTTAACTGGTCGCAAACCGGTCGATCATACGCTGCCCCG 1200
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 TGGCCAGCAGAGTCTTGTGACATGGGCTACTCCAAGGCTAAGTGAAGACAAGGTGAAGCA 1260
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 ATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGCTGTTGCCAAGATGGCTGC 1320
consensus_16211#1 ------------------------------------------------------------
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 CGTAGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGT 1380
consensus_16211#1 ---------------------------GGCGGA-TTCNGGCCCAACATGAGCATCGTCGT 32
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 CAAGGCTCTGAACCCACTCCTCAACAGCCGCCC-GAACAATCGCCCCGCCTCC-TTCACC 1438
consensus_16211#1 CAAGGCTCTGAACCCACTCCTCAACAGCCGCCCCGAACAATCGCCCCGCCTNCCTTCACC 92
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 GACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCG 1498
consensus_16211#1 GACGCCGGCGAGCGACCCGGATTATGAGCACGCCATGACCATTTTTCTCATCGGACTCCG 152
consensus_16211#2 ------------------------------------------------------------
consensus_16211#0 GTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAAT 1558
consensus_16211#1 GTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAAT 212
consensus_16211#2 -----------------------------------------------AATGTGTAAAAAT 13
*************
consensus_16211#0 TCAGTGGAAATGAAGAGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCA 1618
consensus_16211#1 TCAGTGGAAATGAAGAGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCA 272
consensus_16211#2 TCAGTGGAAATGAAGAGGGTAGCTNTGCTGCTGCCTGTCTTGTTNTTGCCNCGATCTCCA 73
************************ ******************* ***** *********
consensus_16211#0 GACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTT 1678
consensus_16211#1 GACTCCTGTTGCTGTAAATTGTCGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCTT 332
consensus_16211#2 GACTCCTGTTGCTGTAAATTGTCGCAATCCCTCNTGATTATGTGTTCCTCTCGNCCTCTT 133
********************************* ******************* ******
consensus_16211#0 GTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAAAAACTTCAA 1738
consensus_16211#1 GTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCA-------CTTTTA 385
consensus_16211#2 GTAGTAGTTTGAGAAATGGATGAATATATATACTTCTTGCTTGTCCAAAAAAAAAAAAAA 193
*********************************************** *
consensus_16211#0 AAAAAAACAGACAAGTTTTGTTGTTCTGCGTACAATGGGCAGATTAATAATTC 1791
consensus_16211#1 AAAA------------------------------------------------- 389
consensus_16211#2 AAAAAANAAAAAAAAAAAAAAAAAAAAAAA----------------------- 223
****
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||