These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence [CCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACATGTAATTTGTGGGGAAAAAAAAAGCTGAGATGAGAGAGAGAGCACACTGTGGAGAGAGATAGAGAGAAGAGAAGAGAAGAGATCATCATCATCTCATAGGCAGAAAAATAGCTAGCTAGAGCAGCCAATTCAACAACCAAACGAAGAACCCAAAAAAAATTCCTGCAAGATTTCATCGCCGGTGGTCGATCAAGAAGGAGATCAAGAACACAGATCGACTACCGACCGCGTTCTTCCTCGTCTCCGGCCGGTCGATGATCTTGGAAAGGCGGCGGCGAGCGGAAGATCAATTTGGGATGCATTGATGAACAAGAAGGAAGGAGAGATCAACAAAATCATGGGAGGAGAAGAGAAGCAAAGAAAGTGTAAGTGCACTAGCTAGTGTTGCTACTACTTGATTTGCTAGCTAGCTAGCTCTACTTGGCTTCTTGGCTTCTTGATCTCCTTCCTTGGGTGGTATGTAGTAGCTTAT] [+] EMBL CF324241 [CCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACATGTAATTTGTGGGGAAAAAAAAAGCTGAGATGAGAGAGAGAGCACACTGTGGAGAGAGATAGAGAGAAGAGAAGAGAAGAGATCATCATCATCTCATAGGCAGAAAAATAGCTAGCTAGAGCAGCCAATTCAACAACCAAACGAAGAACCCAAAAAAAATTCCTGCAAGATTTCATCGCCGGTGGTCGATCAAGAAGGAGATCAAGAACACAGATCGACTACCGACCGCGTTCTTCCTCGTCTCCGGCCGGTCGATGATCTTGGAAAGGCGGCGGCGAGCGGAAGATCAATTTGGGATGCATTGATGAACAAGAAGGAAGGAGAGATCAACAAAATCATGGGAGGAGAAGAGAAGCAAAGAAAGTGTAAGTGCACTAGCTAGTGTTGCTACTACTTGATTTGCTAGCTAGCTAGCTCTACTTGGCTTCTTGGCTTCTTGATCTCCTTCCTTGGGTGGTATGTAGTAGCTTAT] consensusID : consensus_1622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [CGGCCGGTGAGCAGAGCTGGGACCTGCCGACGCCGTCGTCGTCCAACGTCGAGGCGAGCATCATCGCGTCGGACGCCGCTCATGGCCGCCGCGGCCGCGTCGATGAACCCGGCGGTCAGCGCCGCCGCCGCCTCCACGGCGCCGTCCGCGCAGTCGCTCCTCTACTGGGGCAACGGCGGCATTGGCGCCGCCGCCGCGGCATGGCCGGACCTCGCCAACTGCGGATCCTCCATAGCGACGCTCTTCTAGCTAGCCCAGCCTGCCGNGCGCGCCGCCTCCACGCCGCCGACTGTGCTAGCTAGCTAGCTAGCTCGTCGCCGTTCGCCGTCGTCGTTAACTCTATTTTTTTTCCACCTTAATTTTCCCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACA] [+] EMBL AU166708 [CGGCCGGTGAGCAGAGCTGGGACCTGCCGACGCCGTCGTCGTCCAACGTCGAGGCGAGCATCATCGCGTCGGACGCCGCTCATGGCCGCCGCGGCCGCGTCGATGAACCCGGCGGTCAGCGCCGCCGCCGCCTCCACGGCGCCGTCCGCGCAGTCGCTCCTCTACTGGGGCAACGGCGGCATTGGCGCCGCCGCCGCGGCATGGCCGGACCTCGCCAACTGCGGATCCTCCATAGCGACGCTCTTCTAGCTAGCCCAGCCTGCCGNGCGCGCCGCCTCCACGCCGCCGACTGTGCTAGCTAGCTAGCTAGCTCGTCGCCGTTCGCCGTCGTCGTTAACTCTATTTTTTTTCCACCTTAATTTTCCCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1622#0 CCTGAGTTAATTTCCCGATCTCTTGACTAAAAAATAACATGTAATTTGTGGGGAAAAAAA 60 consensus_1622#1 -----------------------------------------------------------C 1 consensus_1622#0 AAGCTGAGATGAGAGAGAGAGCACACTGTGGAGAGAGATAGAGAGAAGAGAAGAGAAGAG 120 consensus_1622#1 GGCCGGTGAGCAGAGCTGGGAC---CTGCCGACGCCGTCGTCGTCCAACGTCGAGGCGAG 58 * * ** **** * * *** ** * * * * *** *** consensus_1622#0 ATCATCATCATCTCATAGGCAGAAAAATAGCTAGCTAGAGCAGCCAATTCAAC-AACCAA 179 consensus_1622#1 --CATCATCGCGTCGGACGCCGCTCA-----TGGCCGCCGCGGCCGCGTCGATGAACCCG 111 ******* ** * ** * * * ** ** *** ** * **** consensus_1622#0 ACGAAGAACCCAAAAAAAATTCCTGCAAGATTTCATCGCCGGTGGTCGATCAAGAAGGAG 239 consensus_1622#1 GCGGTCAGCGCCGCCGCCGCCTCCACGGCGCCGTCCGCGCAGTCGCTCCTCTACTGGGGC 171 ** * * * * * * ** * ** * ** consensus_1622#0 ATCAAGAACACAGATCGACTACCGACCGCGTTCTTCCTCGTCTCCGGCCGGTCGATGATC 299 consensus_1622#1 AACGGCGGCATTGGC--GCCGCCG-CCGCGGCATGGCCGGACCTCG-CCAACTGCGGATC 227 * * ** * * *** ***** * * * * ** ** * **** consensus_1622#0 TTGGAAAGGCGGCGGCGAGCGGAAGATCAATTTGGGATGCATTGATGAACAAGAAGGAAG 359 consensus_1622#1 CTCCATAG----CGACGCTCT-----TCTAGCTAGCCCAGCCTGCCGNGCGCGCCG---- 274 * * ** ** ** * ** * * * ** * * * * consensus_1622#0 GAGAGATCAACAAAATCATGGGAGGAGAAGAGAAGCAAAGAAAGTGTAAGTGCACTAGCT 419 consensus_1622#1 -------CCTCCACGCCGCCGACTGTGCTAGCTAGCTA-GCTAGCTCGTCGCCGTTCGCC 326 * * * * * * * *** * * ** * * ** consensus_1622#0 AGTGTTGCTACTACTTGATTTGCTAGCTAGCT-AGCTCTACTTGGCTTCTTGGCTTCTTG 478 consensus_1622#1 GTCGTCGTTA--ACTCTATTTTTTTTCCACCTTAATTTTCCCTGAG---TTAATTTCCCG 381 ** * ** *** **** * * * ** * * * * ** ** *** * consensus_1622#0 ATCTCCTTCCTTGGGTGGTATGTAGTAGCTTAT 511 consensus_1622#1 ATCT-----CTTGACTAAAAAATAACA------ 403 **** **** * * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||