These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 28 consensus length = 1117 fasta sequence [AGATCGAAGCATCGCGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT-GGGGAGTTCAGT-GATTTCCA-GGAGATTTTGCGCTA-TTT-GGAT-GAATTAACCCTGT-CCGAT-CATATGT-GGGATGATGGAAACT-CC-TTGGGTCCCAAGGAGGT-CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA-CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC-TGAA-T-GGCGCGA-GGA-CATGACA-TTTGAGGAAGC-TGTCAAGCTT-G-TTGA-GAAGTGC-TTGC-TTGTCCTGC-TGTACCGTGA-CCGATCATC-TA-TTAACA-AGTTCCAGA-TTGCCAAGAT-CACAACTGA-GGGA-GCGACCA-TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT-CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AB026568 [AGATCGAAGCATCGCGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACATTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA AAAAAAAAAAAAAAAA ] [+] EMBL OS1253A [AGATCGAAGCATCGCGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCNAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTNACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGNGCGTGGAGCGNATT ] [+] EMBL AK071380 [ GATCGAAGCATCGCGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTG ] [+] EMBL AU165944 [ CGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCA TATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGTGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAANT GGGGAGTTCAGTGGATTTCCAGGGAGATTTTGCGCTA TTTGGGATGGAATTAACCCTGT CCGAT CATATGTGGGGATGATGGAAACT CC TTGGGTCCCAANGAGGT CCATAGCTACC ] [+] EMBL AU068925 [ CCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CA ] [+] EMBL AK103975 [ GAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGC ] [+] EMBL CF326425 [ CAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TG ] [+] EMBL C74209 [ AACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGANGACGCA TATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGA CNCATTAANGCTGTTGGTAAGCATAGCCTTATTGGAGCNAGT TGGGAGTTCAGT GATTTCCA NGAGA TTTGCGC A ATT GGAT GAA TAA CCTGT CCG T CATATGT GGGATGA ] [+] EMBL CA753134 [ TAAATCCCTCG GAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAA GGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCANAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATGGGTACACACTTTGAAGAAAA CACATTG CA CTGGGTTTGGGAA CATATGGCAATCCC ATACTcg ] [+] EMBL AU068248 [ TCGGAGAGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGG ] [+] EMBL AU163324 [ AGAGAGAGAGATAGAGAGGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGTGGGGGAGTTCAGT GATTTCCA GGAGATTTTTCGCTATTTT GGAT GAATTAACCCTGTCCCGATCCATATGTGGGGATGATTGGAACT CCTTTGGGTCCCAAGGAGGTCCCATAGCTACCTNACGNGAGTTATGTACAACAGGCGC ACAAGTTTGt ] [+] EMBL AK104212 [ GAAGAAATCATGGCGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTG ] [+] EMBL AU161549 [ CAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAANT NGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT TGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAAGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACANGCGC ] [+] EMBL AU031340 [ GCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATNTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGANGCCTTGTGAAATGTTTTAT ] [+] EMBL AU031341 [ nCTGTTGGTAAGCATANCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTCCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGATTGATGTACAACAGGCGCAACAAGTTTGANCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACT GGGNTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACAaaaa ] [+] EMBL C73351 [ GCCTTATTGGAGCAAGT GGGGAGTTCAGT GATTTCCA GGAGATTTTGCGCTA TTT GGAT GAATTAACCCTGT CCGAT CATATGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGNTTGGGAACCATATGGCAATCCCAATACTTCGTACTTGAATT NGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G ] [+] EMBL AU068926 [ CTGTCCCGAT CATATGT GGGATGATGNAAACTCCC TTGGGTCCCAAGGAGNC CCATAGCTACCTGACGAGAGTGATGTACAACA GCGCAACAAGTTTGATCCCCTCTGNAACTCCCTTGTAATTGGTGGGTTGAAAAAGGGTCCAAAGGTTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACT GGGNTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA AAAAAAAA ] [+] EMBL OSS11314A [ TGT GGGATGATGGAAACT CC TTGGGTCCCAAGGAGGT CCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTACTTGAA T GGCGCGAGGGACCATGACA TTTGAGGGAGCTTGTCAAGTTTNGTTTGAGGAAGTGCTTTGCTTTGTCCTGCTTGTACCGTGACCCGATCATCTTATTTAACA AGTTTCAGATTTGCC AGATCCAC ACTTAGGGGAGGCGGCCATTTTACCCGGCATATTCAT ] [-] EMBL CF309063 [ TACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTGGATTTCTACCTT CTGTGGCCGTTAAaaaa ] [+] EMBL AU165646 [ CAACAAGTTTGATCCCNTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCA CTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCANAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGANAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCAA AAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL BI798246 [ acacCAC CTTTGAGGAAAACCAC TTCCCACCTGGTTTTGGGAACCATATGGCAATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAA C TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGC ACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA AAAAAA ] [+] EMBL AU161550 [ CA CTGGGTTTGGGACCCATATGGCAACCCCAATA TTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTNCCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACT GGGNTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTAaaaaa ] [+] EMBL BI799661 [ CATAT GCCATCCCAATACTTCGTAC TGAA T GGCGCGA GGA CATGACA TTTGAGGAA C TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TT CCAAGAT CAC ACTGA GGGA GCGACCA TCTACCC CCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCT CAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGA GCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGT C ACTTAGATTTCTACCTTCCTGTGCCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA AAAAAA ] [+] EMBL BI796792 [ GGCAATCCCAATACTTCGTAC TGAA T GCGCGA GGA CATGACA TTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACACAGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGATGAAAGTCTGTTTTGTTTCGA AAAAAAAAA ] [+] EMBL BI797585 [ cgtTAC TGAA TGGGCGCGA GGA CATGACATTTTGAGGAAGC TGTCAAGCTT G TTGA GAAGTGC TTGC TTGTCCTGC TGTACCGTGA CCGATCATC TA TTAACA AGTTCCAGA TTGCCAAGAT CACAACTGA GGGA GCGACCA TCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGC ACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTAaaaa ] [-] EMBL CA999614 [ CAGGGTGCGGTAGGATCATGGTAGATTTATTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAAACAGGCTCTGTTGCTGAGAGGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTCTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATGAT ] [+] EMBL AU031118 [ TTNTGCTGCAGAGGCTGAATGTCAGGCCATGANCCAGGATGAAGAANCAGGCTCTGTTGCTGAGAGGCCTTGTNAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTNGATTTNTACCTT CTGTGGCCGTTAAGCCTGGAACTATNTTATATATGATGAAAGTCTGTTTTGTTTCGANNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU163323 [ nAAATGTTTTATNTGAACATCAATGAAACTCCAGATTTGCTTTGTATGACATTCTGATCGTGCAACTTAGATTTNTACCTT CTGTGGCCGTTAAGCCTGGAACTATATTATATATNATGAAAGTCTGTTTTGTTTCGA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_16228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [CAGATTCTTGCGGCGATTCATCTTCCGTTCCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTACCTGATTTTTTTTCCCTTGGATTCCGCAGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCGTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGTGGGGAGTTCAGTGATTTCCAGGAGATTTTGCGCTATTTGGATGAATTAACCCTGTCCGATCATATGTGGGATGATGGAAACTCCTTGGGTCCCAAGGAGGTCCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGT] [+] EMBL CF309062 [CAGATTCTTGCGGCGATTCATCTTCCGTTCCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTACCTGATTTTTTTTCCCTTGGATTCCGCAGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCGTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGTGGGGAGTTCAGTGATTTCCAGGAGATTTTGCGCTATTTGGATGAATTAACCCTGTCCGATCATATGTGGGATGATGGAAACTCCTTGGGTCCCAAGGAGGTCCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGT] consensusID : consensus_16228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [AAACCCAACCATTCCCCACCTTGGGTTTTGGAACCAATATGCCAATCCCAATACTTCGGTACTGAATGGGCCGCGAGAACATGGACAATTTGAGGAAAGCTGTCAAGCTTGCTTTGAGAAGTGCTTGCTGGTCCTGCTGTACCGTGCACCGATCATCTATTAACAAGTTCCAGATGCCCAAGATCACAACTGAGGGAGCGACCATCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCACTGCCATTTGAAAATCCGCACCAGGGTCCCTGTAGGATCATGGTAGATTTATTTATGCTCCAGAGGCTGAATGTCAGCCATGAACCAGGATGAAGAACACAGGCTCTGTTCTGAGAGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGGACATTCTGATCGCCAACTTAGATTTCCTCACCTTCTGGGCCGTTAAGCCGGGAACTATATTATATAGGAGGAAAGTCTGTTTGTTTCC] [+] EMBL BI796842 [AAACCCAACCATTCCCCACCTTGGGTTTTGGAACCAATATGCCAATCCCAATACTTCGGTACTGAATGGGCCGCGAGAACATGGACAATTTGAGGAAAGCTGTCAAGCTTGCTTTGAGAAGTGCTTGCTGGTCCTGCTGTACCGTGCACCGATCATCTATTAACAAGTTCCAGATGCCCAAGATCACAACTGAGGGAGCGACCATCTACCCGCCATACTCATTGAAGACTTACTGGGGCTTCACTGCCATTTGAAAATCCGCACCAGGGTCCCTGTAGGATCATGGTAGATTTATTTATGCTCCAGAGGCTGAATGTCAGCCATGAACCAGGATGAAGAACACAGGCTCTGTTCTGAGAGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTGTATGGACATTCTGATCGCCAACTTAGATTTCCTCACCTTCTGGGCCGTTAAGCCGGGAACTATATTATATAGGAGGAAAGTCTGTTTGTTTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16228#0 AGATCGAAGCATCGCGCCCGAGCCAAACCTAAATCCCTCGGAGAGAGAGAGAGATAGAGA 60 consensus_16228#2 ------------------------------------------------------------ consensus_16228#1 ------------------------------------------------------------ consensus_16228#0 GGAGGAAAAAATCAAATCTTTTTGAGGAAGAAATCATGGCGTGGCAGCAACCCATGGACG 120 consensus_16228#2 ------------------------------------------------------------ consensus_16228#1 ------------------------------------------------------------ consensus_16228#0 GATCCCACGCGAGCGGGAGCAAGGCGGCGGCGGCGGTGGCGGATGGCCCGGGAACCCAGA 180 consensus_16228#2 ------------------------------------------------------------ consensus_16228#1 ------------------------------------------------------------ consensus_16228#0 GGACGCAGTATCCTTATGTGACTGGCTCATCAATTATTGCACTGAAATACAAGGATGGTG 240 consensus_16228#2 ------------------------------------------------------------ consensus_16228#1 ------------------------------------------------------------ consensus_16228#0 TCATCATGGCATCCGACACTGGAGCCTCATATGGCTCAACTTTGCGATACAAGAGCGTGG 300 consensus_16228#2 ------------------------------------------------------------ consensus_16228#1 ------------------------------------------------------------ consensus_16228#0 AGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGTGGGGAGTTCAGTGATT 360 consensus_16228#2 ------------------------------------------------------------ consensus_16228#1 ------------------------------------------------------------ consensus_16228#0 TCCAGGAGATTTTGCGCTATTTGGATGAATTAACCCTGTCCGATCATATGTGGGATGATG 420 consensus_16228#2 ------------------------------------------------------------ consensus_16228#1 ------------------------------------------------------------ consensus_16228#0 GAAACTCCTTGGGTCCCAAGGAGGTCCATAGCTACCTGACGAGAGTGATGTACAACAGGC 480 consensus_16228#2 ------------------------------------------------------------ consensus_16228#1 ------------------------------------------------------------ consensus_16228#0 GCAACAAGTTTGATCCCCTCTGGAACTCCCTTGTAATTGGTGGGGTGAAAAAGGGTCCAA 540 consensus_16228#2 ------------------------------------------------------------ consensus_16228#1 ------------------------------------------------------------ consensus_16228#0 AGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAAC- 599 consensus_16228#2 --------------------------------------------------AAACCCAAC- 9 consensus_16228#1 -------------------------------------CAGATTCTTGCGGCGATTCATCT 23 * * consensus_16228#0 --CACATTGC-CACTGGGTTTGGGAACCA-TATGGCAATCCCAATACTTCG-TACTGAAT 654 consensus_16228#2 --CATTCCCCACCTTGGGTTTTGGAACCAATATGCCAATCCCAATACTTCGGTACTGAAT 67 consensus_16228#1 TCCGTTCCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTACCTGATTTTTTTTCCCTTGGAT 83 * * * * * * * * * * * ** ** ** consensus_16228#0 G----G--CGCGAGGAC--ATGAC---ATTTGAGGAA-GCTGT--CAAGCTTG--TTGAG 698 consensus_16228#2 G----GGCCGCGAGAAC--ATGGACA-ATTTGAGGAAAGCTGT--CAAGCTTGCTTTGAG 118 consensus_16228#1 TCCGCAGTGGCAGCAACCCATGGACGGATCCCACGCGAGCGGGAGCAAGGCGGCGGCG-G 142 ** ** *** ** * * ** * **** * * * consensus_16228#0 AAGTGCTTGCTTGTCCTGCTGTACCGTG-ACCGATCATCTAT---TAACAAGTTC-CAGA 753 consensus_16228#2 AAGTGCTTGCTGGTCCTGCTGTACCGTGCACCGATCATCTAT---TAACAAGTTC-CAGA 174 consensus_16228#1 CGGTGGCGGATGGCCCGGGAACCCAGAGGACGCAGTATCCGTATGTGACTGGCTCATCAA 202 *** * * * ** * * * * ** * *** * * ** * ** * consensus_16228#0 TTGCCAAGATCACAACTGAGGGAGCGACCATCTACCCGCCATACTCATTGAAGACTTACT 813 consensus_16228#2 TGCCCAAGATCACAACTGAGGGAGCGACCATCTACCCGCCATACTCATTGAAGACTTACT 234 consensus_16228#1 TTATTGCACTGAAATACAAGGATGGTGTCATCATGGCATCCGA--CACTGGAGCCTCA-T 259 * * * * *** * **** * * * ** ** ** ** * * consensus_16228#0 GGGGCTTCGCTGCC-TTTGAAAATCCGGCCCAGGGTGC-TGTAGGATCATGGTAGATTTA 871 consensus_16228#2 GGGGCTTCACTGCCATTTGAAAATCCGCACCAGGGTCCCTGTAGGATCATGGTAGATTTA 294 consensus_16228#1 ATGGCTCAACTTTGCGATACAAGAGCG---TGGAGCGCATTAAGGCTGTTGGTAAGCATA 316 **** ** * ** ** * * * * *** * ***** ** consensus_16228#0 TTTATGCTGCAGAGGCTGAATGTCAGGCCATGAACCAGGATGAAGAA-ACAGGCTCTGTT 930 consensus_16228#2 TTTATGCTCCAGAGGCTGAATGTCAG-CCATGAACCAGGATGAAGAACACAGGCTCTGTT 353 consensus_16228#1 GCCTTATTGGAGCAAGTG---GGGAGTTCAGTGATTTCCA-GGAGATTTTGCGCTATTTG 372 * * ** ** * ** ** * * * *** *** * * consensus_16228#0 GCTGAGA-GGCCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTG 989 consensus_16228#2 -CTGAGA-G-CCTTGTGAAATGTTTTATCTGAACATCAATGAAACTCCAGATTTGCTTTG 410 consensus_16228#1 GATGAATTAACCCTGTCCGAT--CATATGTGGG-ATGATGGAAACTCC----TTGGGTCC 425 *** ** *** ** *** ** ** * ******** *** * consensus_16228#0 TATG-ACATTCTGATCGTGCAACTTAGATTTCT--ACCTTCTGTGGCCGTTAAGCCTGGA 1046 consensus_16228#2 TATGGACATTCTGATCGC-CAACTTAGATTTCCTCACCTTCTG-GGCCGTTAAGCCGGGA 468 consensus_16228#1 CAAGGAGGTCCATAGCTACCTGACGAGAGTG----ATGTACAACAGGCGCAA---CAAGT 478 * * * * * * * * *** * * * * * ** * * * consensus_16228#0 ACTATATTATATATGATGAAAGTCTGTTTTGTTTCGAAAAAAAAAAAAAAAAAAAAAAAA 1106 consensus_16228#2 ACTATATTATATAGGAGGAAAGTCTGTTTGTTTCC------------------------- 503 consensus_16228#1 TTGATCCCCTCTGGAACTCCCTTGTAATTGGT---------------------------- 510 ** * * * * * ** * consensus_16228#0 AAAAAAAAAAA 1117 consensus_16228#2 ----------- consensus_16228#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||