These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 29 consensus length = 1384 fasta sequence [ATCTCTTTCTTCTCTCCAAAACACAAATCGTCGCC-GCATCCCCTC-AACTCCGGC-GATCCCC-TTGGCGGCGGCGGCGGCTT--CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG-CGTGGTGGGGGA-GG-T-GGA-TGAAGAACTGGATGCGAGGC-TGGATCTATCGAATCTGAG-AGCGC-ACCCG-CTG-AAGCCCG-TGA-T--CCAC-TAAT-GGAAAC--G-AATGAA--T-GATG-TACT-ACTACTAGTAGT-AAGCT-AAACCTAAATGT-AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT-GAGTGAAGATTTGGTTTCCATTGTAAAAAAAAAATTGTGCAGCTGTATCAATGTACATGAATGAGGAAGGCAGGCAGGTCAGTTGTTGAAGAGAAGAAGAGCATATTAGGAGTAGGTGGGAGGGGTAGCCGGCTGGTGCTGCTCGTCTTTGAAGTAGTTGCAGGTGATGAAGACGCCGCCGTTGAAGCACTCGGCGCGGGCGCAGCCGATCCTGGTGAAGTTGGGCCTGACCATGAAGGCGAAGTGGCCGCACTCGTGGAAGTCGACGCCGGCGGTGCATTTGCCGGTGTCCCTGTCGTAGAGGTGCTCCTCGTCGCCCCAGCATCGGACGGCGTCGGAAGCCCTGGCGTTCCAGCCGTTCCTCCCGATGTAGAGGCTCTCGGCGAAGCTGTTGCCGGTGGAGTGGCGGATCTGGCAGTCGCCGCGCATGGCGTCGGACCACCGCCGCGCCTGCCTCGCCAGCTTGTTATCCCACCTCATCGGCTGCAGCCCGTAGCGCGCGCGCAGCTGGTTGTGGCCGTCCACGAACTCCCGCGGCATCCCCTTGTACCAACCCATCCCATTGGTCCACGACACCAACCACCCCGCTGGTGCCGATGCTGATGCGTCGTCGTTGAACCAACACATCGCGTCGCCCACAGACAGCAGCAGAAACCAACACAATAGCAATAGTAATGGGAGGATCATCGCGGCGGCGGCCATTGTCTGCCGTCGTCCCGACGAGGACGAGGCCGCCC] [+] EMBL AU183296 [ATCTCTTTCTTCTCTCCAAAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGANTTTTTNGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG TGGGATTGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G A ] [+] EMBL AK121070 [ TTCTCTCCAAAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA C CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTATTGTATTGTTTGTGCAGCTGTATCAATGTACATGAATG ] [+] EMBL CF280532 [ TCTCTCCAAAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGAGGG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGTNAGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCAAGGAAGTCCAGCAAGCGGATGAGC ] [+] EMBL CF300914 [ TCTCTCC AAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGAGGG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAA ] [+] EMBL CF337603 [ TCTCTCC AAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GGTT GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGTNAGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTT ] [+] EMBL CF329920 [ AAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGAGGG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATG ] [+] EMBL AU089815 [ CGTCGCCGGCATCCCNTCAAACTCCGGCGGATCCCCTTTGCCGCCGCCGNCGGCTTTCCCCCAATCACCCCACTCCACTTGAACTNCAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGNA GG T GGA TGAAGAACTGGATGCNAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAAAAAAa ] [+] EMBL AU058206 [ TCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGANGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GG AAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTG ] [+] EMBL OS0310A [ TCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T ] [+] EMBL CF277617 [ CGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAA ] [+] EMBL AU198148 [ GCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAA ] [+] EMBL OSS15602A [ CC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTTCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAGAANCGC ACCCG NTG AAGCCCG TNATT CCAC TAAatg ] [+] EMBL OSS16448A [ CC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTNCGCCGGCCCGGGGCTCGAATCGCTCGTNGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGCTTGGATCTATCGAATCTGAGAANCGC ACCCGNTTG AAGGCCG TTA T CCAC TAATGGGAAAC GNATTGAAT T GATG TACTAATTACTtag ] [+] EMBL OS1321709 [ ATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTNCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAG ACTNGATGCGAGGC TGGATCTATCGAATCTNAG AGCGa ] [+] EMBL CA758737 [ C AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAttgtaaa ] [+] EMBL OSC29881 [ GGC GATCCCC TTGGCGGCGGCGGCGGCTT CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTNCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG ACCGC A ] [+] EMBL BI799484 [ CTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGAT GCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAAA ] [-] EMBL CF277618 [ TCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTTTATTTTACCAGGGAGGGAGTGCAACAGCTTGTTTTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATTTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTTTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAaaaaaaa ] [-] EMBL CF337604 [ GTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTATTAAAAA ] [-] EMBL CF280533 [ GGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGT TGGTTTTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGGG T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTAAT AAGAAATGGGTGCTAGTGTTGCCGATGAGTGACCTTCTTTAAAAAAAAAAAGAAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGT AAGATTTGGTTT TTTTAAAA ] [+] EMBL AU101468 [ cCCTCGATGAGTCCCATGAGAGGNTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAGCCGTGGTGGGGGA GN T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCA AAAAAAA ] [+] EMBL AU223289 [ GAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAA ] [-] EMBL CF300915 [ GTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T CCAC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAATATTTGG ] [+] EMBL AU162050 [ AGCGCAACCCG NTGAAAGCCCGTTGA TTCCCACTTAAT GGAAACCGG AATGAAATTGGATGTTACT ACTACTAGTAGTAAAGCTAAAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAAAAAA ] [+] EMBL AU198149 [ nCCCG CTG AAGCCCG TGA T CCCC TAAT GGAAAC G AATGAA T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCANAAGTTGTGAANAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTNTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAANAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACNCAGACNCAGTGACTCAGT GAGTGAAGATTTGGTTTCNAAAAAAAAAAAAAAAaa ] [+] EMBL CF327918 [ CT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCaaaaa ] [-] EMBL CF327919 [ T ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCaaaaaa ] [+] EMBL BI798272 [ GTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGTCGAGTGAAGATTTGGTTTCC TTGTAAAAAAA ] [-] EMBL AK071326 [ TTGGTTTCCATTGTATTGTATTGTTTGTGCAGCTGTATCAATGTACATGAATGAGGAAGGCAGGCAGGTCAGTTGTTGAAGAGAAGAAGAGCATATTAGGAGTAGGTGGGAGGGGTAGCCGGCTGGTGCTGCTCGTCTTTGAAGTAGTTGCAGGTGATGAAGACGCCGCCGTTGAAGCACTCGGCGCGGGCGCAGCCGATCCTGGTGAAGTTGGGCCTGACCATGAAGGCGAAGTGGCCGCACTCGTGGAAGTCGACGCCGGCGGTGCATTTGCCGGTGTCCCTGTCGTAGAGGTGCTCCTCGTCGCCCCAGCATCGGACGGCGTCGGAAGCCCTGGCGTTCCAGCCGTTCCTCCCGATGTAGAGGCTCTCGGCGAAGCTGTTGCCGGTGGAGTGGCGGATCTGGCAGTCGCCGCGCATGGCGTCGGACCACCGCCGCGCCTGCCTCGCCAGCTTGTTATCCCACCTCATCGGCTGCAGCCCGTAGCGCGCGCGCAGCTGGTTGTGGCCGTCCACGAACTCCCGCGGCATCCCCTTGTACCAACCCATCCCATTGGTCCACGACACCAACCACCCCGCTGGTGCCGATGCTGATGCGTCGTCGTTGAACCAACACATCGCGTCGCCCACAGACAGCAGCAGAAACCAACACAATAGCAATAGTAATGGGAGGATCATCGCGGCGGCGGCCATTGTCTGCCGTCGTCCCGACGAGGACGAGGCCGCCC] consensusID : consensus_16242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [GTGGGCACGCTGAAGCCCGTGATCCACTAATGGAAACGAATGAATGATGTACTACTACTAGTAGTAATGCTAAACCTAAATGTAGTGTTGTCCCAAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTCCGATGAGTGAACTTCTTGTAAACGTACGCGAGGAAGTCCGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGTTTTATTGGTGTGGATGGTGATCCATGTTTGTTGAAACACGGAACACAGACACAGTGACTCCAGTGAGTGAAGATTTGTTCCCATTGTATTGTATTGTTTGCCACCCCACAATGTACATGAATGAGGAAGCCAGCAA] [+] EMBL BI798831 [GTGGGCACGCTGAAGCCCGTGATCCACTAATGGAAACGAATGAATGATGTACTACTACTAGTAGTAATGCTAAACCTAAATGTAGTGTTGTCCCAAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTCCGATGAGTGAACTTCTTGTAAACGTACGCGAGGAAGTCCGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGTTTTATTGGTGTGGATGGTGATCCATGTTTGTTGAAACACGGAACACAGACACAGTGACTCCAGTGAGTGAAGATTTGTTCCCATTGTATTGTATTGTTTGCCACCCCACAATGTACATGAATGAGGAAGCCAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16242#0 ATCTCTTTCTTCTCTCCAAAACACAAATCGTCGCCGCATCCCCTCAACTCCGGCGATCCC 60 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 CTTGGCGGCGGCGGCGGCTTCCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTC 120 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 CGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGG 180 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 CCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGA 240 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 GTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTA 300 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 CATCATAAGGGGCGACAACATCAGCGTGGTGGGGGAGGTGGATGAAGAACTGGATGCGAG 360 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 GCTGGATCTATCGAATCTGAGAGCGCACCCGCTGAAGCCCGTGATCCACTAATGGAAACG 420 consensus_16242#1 ----------------------GTGGGCACGCTGAAGCCCGTGATCCACTAATGGAAACG 38 * * * ******************************* consensus_16242#0 AATGAATGATGTACTACTACTAGTAGTAA-GCTAAACCTAAATGTAGTGTTGTCCCA-GA 478 consensus_16242#1 AATGAATGATGTACTACTACTAGTAGTAATGCTAAACCTAAATGTAGTGTTGTCCCAAGA 98 ***************************** *************************** ** consensus_16242#0 AGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTT--AACGTACGCGA 536 consensus_16242#1 AGTTGTGAAGAAGTGGGTGCTAGTGTT-CCGATGAGTGAACTTCTTGTAAACGTACGCGA 157 *************************** ****************** *********** consensus_16242#0 GGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGT 596 consensus_16242#1 GGAAGTCC-GCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATG-TTTTAT-TGGTG-T 213 ******** ************************************ ****** ***** * consensus_16242#0 GGATGGGTGATGCATGTTTGTTGAA-CACG-AACACAGACACAGTGACTC-AGTGAGTGA 653 consensus_16242#1 GGATGG-TGATCCATGTTTGTTGAAACACGGAACACAGACACAGTGACTCCAGTGAGTGA 272 ****** **** ************* **** ******************* ********* consensus_16242#0 AGATTTGGTTTCCATTGTAAAAAAAAAATTGTGCAGCTGTATCAATGTACATGAATGAGG 713 consensus_16242#1 AGATTTG-TTCCCATTGTATTGTATTGTTTG--CCACCCCA-CAATGTACATGAATGAGG 328 ******* ** ******** * *** * * * ****************** consensus_16242#0 AAGGCAGGCAGGTCAGTTGTTGAAGAGAAGAAGAGCATATTAGGAGTAGGTGGGAGGGGT 773 consensus_16242#1 AAGCCAGCAA-------------------------------------------------- 338 *** *** * consensus_16242#0 AGCCGGCTGGTGCTGCTCGTCTTTGAAGTAGTTGCAGGTGATGAAGACGCCGCCGTTGAA 833 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 GCACTCGGCGCGGGCGCAGCCGATCCTGGTGAAGTTGGGCCTGACCATGAAGGCGAAGTG 893 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 GCCGCACTCGTGGAAGTCGACGCCGGCGGTGCATTTGCCGGTGTCCCTGTCGTAGAGGTG 953 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 CTCCTCGTCGCCCCAGCATCGGACGGCGTCGGAAGCCCTGGCGTTCCAGCCGTTCCTCCC 1013 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 GATGTAGAGGCTCTCGGCGAAGCTGTTGCCGGTGGAGTGGCGGATCTGGCAGTCGCCGCG 1073 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 CATGGCGTCGGACCACCGCCGCGCCTGCCTCGCCAGCTTGTTATCCCACCTCATCGGCTG 1133 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 CAGCCCGTAGCGCGCGCGCAGCTGGTTGTGGCCGTCCACGAACTCCCGCGGCATCCCCTT 1193 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 GTACCAACCCATCCCATTGGTCCACGACACCAACCACCCCGCTGGTGCCGATGCTGATGC 1253 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 GTCGTCGTTGAACCAACACATCGCGTCGCCCACAGACAGCAGCAGAAACCAACACAATAG 1313 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 CAATAGTAATGGGAGGATCATCGCGGCGGCGGCCATTGTCTGCCGTCGTCCCGACGAGGA 1373 consensus_16242#1 ------------------------------------------------------------ consensus_16242#0 CGAGGCCGCCC 1384 consensus_16242#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||