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Oryza sativa
cluster # 16242 cluster # 16242       Sequences # 30       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_16242#0 length = 1384 sequences # 29  
consensus_16242#1 length = 338 sequences # 1  

consensusID : consensus_16242#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 29
consensus length = 1384
fasta sequence
                              [ATCTCTTTCTTCTCTCCAAAACACAAATCGTCGCC-GCATCCCCTC-AACTCCGGC-GATCCCC-TTGGCGGCGGCGGCGGCTT--CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG-CGTGGTGGGGGA-GG-T-GGA-TGAAGAACTGGATGCGAGGC-TGGATCTATCGAATCTGAG-AGCGC-ACCCG-CTG-AAGCCCG-TGA-T--CCAC-TAAT-GGAAAC--G-AATGAA--T-GATG-TACT-ACTACTAGTAGT-AAGCT-AAACCTAAATGT-AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT-GAGTGAAGATTTGGTTTCCATTGTAAAAAAAAAATTGTGCAGCTGTATCAATGTACATGAATGAGGAAGGCAGGCAGGTCAGTTGTTGAAGAGAAGAAGAGCATATTAGGAGTAGGTGGGAGGGGTAGCCGGCTGGTGCTGCTCGTCTTTGAAGTAGTTGCAGGTGATGAAGACGCCGCCGTTGAAGCACTCGGCGCGGGCGCAGCCGATCCTGGTGAAGTTGGGCCTGACCATGAAGGCGAAGTGGCCGCACTCGTGGAAGTCGACGCCGGCGGTGCATTTGCCGGTGTCCCTGTCGTAGAGGTGCTCCTCGTCGCCCCAGCATCGGACGGCGTCGGAAGCCCTGGCGTTCCAGCCGTTCCTCCCGATGTAGAGGCTCTCGGCGAAGCTGTTGCCGGTGGAGTGGCGGATCTGGCAGTCGCCGCGCATGGCGTCGGACCACCGCCGCGCCTGCCTCGCCAGCTTGTTATCCCACCTCATCGGCTGCAGCCCGTAGCGCGCGCGCAGCTGGTTGTGGCCGTCCACGAACTCCCGCGGCATCCCCTTGTACCAACCCATCCCATTGGTCCACGACACCAACCACCCCGCTGGTGCCGATGCTGATGCGTCGTCGTTGAACCAACACATCGCGTCGCCCACAGACAGCAGCAGAAACCAACACAATAGCAATAGTAATGGGAGGATCATCGCGGCGGCGGCCATTGTCTGCCGTCGTCCCGACGAGGACGAGGCCGCCC]

[+] EMBL AU183296             [ATCTCTTTCTTCTCTCCAAAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGANTTTTTNGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG TGGGATTGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AK121070             [         TTCTCTCCAAAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA C  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTATTGTATTGTTTGTGCAGCTGTATCAATGTACATGAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF280532             [          TCTCTCCAAAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGAGGG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGTNAGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCAAGGAAGTCCAGCAAGCGGATGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF300914             [          TCTCTCC AAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGAGGG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF337603             [          TCTCTCC AAACACAAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GGTT GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGTNAGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF329920             [                        AAATCGTCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGAGGG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU089815             [                            CGTCGCCGGCATCCCNTCAAACTCCGGCGGATCCCCTTTGCCGCCGCCGNCGGCTTTCCCCCAATCACCCCACTCCACTTGAACTNCAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGNA GG T GGA TGAAGAACTGGATGCNAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAAAAAAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU058206             [                              TCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGANGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GG AAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OS0310A              [                              TCGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CF277617             [                               CGCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU198148             [                                GCC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL OSS15602A            [                                 CC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTTCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAGAANCGC ACCCG NTG AAGCCCG TNATT  CCAC TAAatg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSS16448A            [                                 CC GCATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTNCGCCGGCCCGGGGCTCGAATCGCTCGTNGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGCTTGGATCTATCGAATCTGAGAANCGC ACCCGNTTG AAGGCCG TTA T  CCAC TAATGGGAAAC  GNATTGAAT T GATG TACTAATTACTtag                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OS1321709            [                                      ATCCCCTC AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTNCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAG ACTNGATGCGAGGC TGGATCTATCGAATCTNAG AGCGa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA758737             [                                             C AACTCCGGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAttgtaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSC29881             [                                                     GGC GATCCCC TTGGCGGCGGCGGCGGCTT  CCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTNCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG ACCGC A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI799484             [                                                                                                    CTCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGAT GCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CF277618             [                                                                                                     TCCACCTGAACTACAGGATGGCGTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTTTATTTTACCAGGGAGGGAGTGCAACAGCTTGTTTTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATTTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTTTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAaaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CF337604             [                                                                                                                           GTCCGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTATTAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CF280533             [                                                                                                                                         GGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGGCCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGT TGGTTTTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGGG  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTAAT AAGAAATGGGTGCTAGTGTTGCCGATGAGTGACCTTCTTTAAAAAAAAAAAGAAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGT AAGATTTGGTTT   TTTTAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU101468             [                                                                                                                                                                                                                                            cCCTCGATGAGTCCCATGAGAGGNTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAGCCGTGGTGGGGGA GN T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCA    AAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU223289             [                                                                                                                                                                                                                                                             GAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CF300915             [                                                                                                                                                                                                                                                                                        GTGCAACAGCTTGTTCTTGGGTTGTACATCATAAGGGGCGACAACATCAG CGTGGTGGGGGA GG T GGA TGAAGAACTGGATGCGAGGC TGGATCTATCGAATCTGAG AGCGC ACCCG CTG AAGCCCG TGA T  CCAC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAATATTTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU162050             [                                                                                                                                                                                                                                                                                                                                                                                                          AGCGCAACCCG NTGAAAGCCCGTTGA TTCCCACTTAAT GGAAACCGG AATGAAATTGGATGTTACT ACTACTAGTAGTAAAGCTAAAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCCATTGTAAAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU198149             [                                                                                                                                                                                                                                                                                                                                                                                                                nCCCG CTG AAGCCCG TGA T  CCCC TAAT GGAAAC  G AATGAA  T GATG TACT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCANAAGTTGTGAANAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTNTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAANAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACNCAGACNCAGTGACTCAGT GAGTGAAGATTTGGTTTCNAAAAAAAAAAAAAAAaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CF327918             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CT ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CF327919             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               T ACTACTAGTAGT AAGCT AAACCTAAATGT AGTGTTGTCCCAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGT GAGTGAAGATTTGGTTTCaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BI798272             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGATGGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGTCGAGTGAAGATTTGGTTTCC TTGTAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL AK071326             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTGGTTTCCATTGTATTGTATTGTTTGTGCAGCTGTATCAATGTACATGAATGAGGAAGGCAGGCAGGTCAGTTGTTGAAGAGAAGAAGAGCATATTAGGAGTAGGTGGGAGGGGTAGCCGGCTGGTGCTGCTCGTCTTTGAAGTAGTTGCAGGTGATGAAGACGCCGCCGTTGAAGCACTCGGCGCGGGCGCAGCCGATCCTGGTGAAGTTGGGCCTGACCATGAAGGCGAAGTGGCCGCACTCGTGGAAGTCGACGCCGGCGGTGCATTTGCCGGTGTCCCTGTCGTAGAGGTGCTCCTCGTCGCCCCAGCATCGGACGGCGTCGGAAGCCCTGGCGTTCCAGCCGTTCCTCCCGATGTAGAGGCTCTCGGCGAAGCTGTTGCCGGTGGAGTGGCGGATCTGGCAGTCGCCGCGCATGGCGTCGGACCACCGCCGCGCCTGCCTCGCCAGCTTGTTATCCCACCTCATCGGCTGCAGCCCGTAGCGCGCGCGCAGCTGGTTGTGGCCGTCCACGAACTCCCGCGGCATCCCCTTGTACCAACCCATCCCATTGGTCCACGACACCAACCACCCCGCTGGTGCCGATGCTGATGCGTCGTCGTTGAACCAACACATCGCGTCGCCCACAGACAGCAGCAGAAACCAACACAATAGCAATAGTAATGGGAGGATCATCGCGGCGGCGGCCATTGTCTGCCGTCGTCCCGACGAGGACGAGGCCGCCC]


>consensus_16242#0 ATCTCTTTCTTCTCTCCAAAACACAAATCGTCGCCGCATCCCCTCAACTCCGGCGATCCC CTTGGCGGCGGCGGCGGCTTCCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTC CGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGG CCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGA GTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTA CATCATAAGGGGCGACAACATCAGCGTGGTGGGGGAGGTGGATGAAGAACTGGATGCGAG GCTGGATCTATCGAATCTGAGAGCGCACCCGCTGAAGCCCGTGATCCACTAATGGAAACG AATGAATGATGTACTACTACTAGTAGTAAGCTAAACCTAAATGTAGTGTTGTCCCAGAAG TTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTTAACGTACGCGAGGAA GTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGTGGAT GGGTGATGCATGTTTGTTGAACACGAACACAGACACAGTGACTCAGTGAGTGAAGATTTG GTTTCCATTGTAAAAAAAAAATTGTGCAGCTGTATCAATGTACATGAATGAGGAAGGCAG GCAGGTCAGTTGTTGAAGAGAAGAAGAGCATATTAGGAGTAGGTGGGAGGGGTAGCCGGC TGGTGCTGCTCGTCTTTGAAGTAGTTGCAGGTGATGAAGACGCCGCCGTTGAAGCACTCG GCGCGGGCGCAGCCGATCCTGGTGAAGTTGGGCCTGACCATGAAGGCGAAGTGGCCGCAC TCGTGGAAGTCGACGCCGGCGGTGCATTTGCCGGTGTCCCTGTCGTAGAGGTGCTCCTCG TCGCCCCAGCATCGGACGGCGTCGGAAGCCCTGGCGTTCCAGCCGTTCCTCCCGATGTAG AGGCTCTCGGCGAAGCTGTTGCCGGTGGAGTGGCGGATCTGGCAGTCGCCGCGCATGGCG TCGGACCACCGCCGCGCCTGCCTCGCCAGCTTGTTATCCCACCTCATCGGCTGCAGCCCG TAGCGCGCGCGCAGCTGGTTGTGGCCGTCCACGAACTCCCGCGGCATCCCCTTGTACCAA CCCATCCCATTGGTCCACGACACCAACCACCCCGCTGGTGCCGATGCTGATGCGTCGTCG TTGAACCAACACATCGCGTCGCCCACAGACAGCAGCAGAAACCAACACAATAGCAATAGT AATGGGAGGATCATCGCGGCGGCGGCCATTGTCTGCCGTCGTCCCGACGAGGACGAGGCC GCCC



consensusID : consensus_16242#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence
                              [GTGGGCACGCTGAAGCCCGTGATCCACTAATGGAAACGAATGAATGATGTACTACTACTAGTAGTAATGCTAAACCTAAATGTAGTGTTGTCCCAAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTCCGATGAGTGAACTTCTTGTAAACGTACGCGAGGAAGTCCGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGTTTTATTGGTGTGGATGGTGATCCATGTTTGTTGAAACACGGAACACAGACACAGTGACTCCAGTGAGTGAAGATTTGTTCCCATTGTATTGTATTGTTTGCCACCCCACAATGTACATGAATGAGGAAGCCAGCAA]

[+] EMBL BI798831             [GTGGGCACGCTGAAGCCCGTGATCCACTAATGGAAACGAATGAATGATGTACTACTACTAGTAGTAATGCTAAACCTAAATGTAGTGTTGTCCCAAGAAGTTGTGAAGAAGTGGGTGCTAGTGTTCCGATGAGTGAACTTCTTGTAAACGTACGCGAGGAAGTCCGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGTTTTATTGGTGTGGATGGTGATCCATGTTTGTTGAAACACGGAACACAGACACAGTGACTCCAGTGAGTGAAGATTTGTTCCCATTGTATTGTATTGTTTGCCACCCCACAATGTACATGAATGAGGAAGCCAGCAA]


>consensus_16242#1 GTGGGCACGCTGAAGCCCGTGATCCACTAATGGAAACGAATGAATGATGTACTACTACTA GTAGTAATGCTAAACCTAAATGTAGTGTTGTCCCAAGAAGTTGTGAAGAAGTGGGTGCTA GTGTTCCGATGAGTGAACTTCTTGTAAACGTACGCGAGGAAGTCCGCAAGCGGATGAGCG AGCATGAAGAAGAATGTTATGTTTTATTGGTGTGGATGGTGATCCATGTTTGTTGAAACA CGGAACACAGACACAGTGACTCCAGTGAGTGAAGATTTGTTCCCATTGTATTGTATTGTT TGCCACCCCACAATGTACATGAATGAGGAAGCCAGCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_16242#0      ATCTCTTTCTTCTCTCCAAAACACAAATCGTCGCCGCATCCCCTCAACTCCGGCGATCCC 60
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      CTTGGCGGCGGCGGCGGCTTCCCCAATCACCCCACTCCACCTGAACTACAGGATGGCGTC 120
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      CGCCGGCCCGGGGCTCGAATCGCTCGTCGACCAGATCATATCCGTCATCACAAACGATGG 180
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      CCGCAACATTGTGGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGA 240
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      GTCCCATGAGAGGGTCTATTCTACCAGGGAGGGAGTGCAACAGCTTGTTCTTGGGTTGTA 300
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      CATCATAAGGGGCGACAACATCAGCGTGGTGGGGGAGGTGGATGAAGAACTGGATGCGAG 360
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      GCTGGATCTATCGAATCTGAGAGCGCACCCGCTGAAGCCCGTGATCCACTAATGGAAACG 420
consensus_16242#1      ----------------------GTGGGCACGCTGAAGCCCGTGATCCACTAATGGAAACG 38
                                             * *  * *******************************

consensus_16242#0      AATGAATGATGTACTACTACTAGTAGTAA-GCTAAACCTAAATGTAGTGTTGTCCCA-GA 478
consensus_16242#1      AATGAATGATGTACTACTACTAGTAGTAATGCTAAACCTAAATGTAGTGTTGTCCCAAGA 98
                       ***************************** *************************** **

consensus_16242#0      AGTTGTGAAGAAGTGGGTGCTAGTGTTGCCGATGAGTGAACTTCTTT--AACGTACGCGA 536
consensus_16242#1      AGTTGTGAAGAAGTGGGTGCTAGTGTT-CCGATGAGTGAACTTCTTGTAAACGTACGCGA 157
                       *************************** ******************   ***********

consensus_16242#0      GGAAGTCCAGCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATGGTTTTATGTGGTGGT 596
consensus_16242#1      GGAAGTCC-GCAAGCGGATGAGCGAGCATGAAGAAGAATGTTATG-TTTTAT-TGGTG-T 213
                       ******** ************************************ ****** ***** *

consensus_16242#0      GGATGGGTGATGCATGTTTGTTGAA-CACG-AACACAGACACAGTGACTC-AGTGAGTGA 653
consensus_16242#1      GGATGG-TGATCCATGTTTGTTGAAACACGGAACACAGACACAGTGACTCCAGTGAGTGA 272
                       ****** **** ************* **** ******************* *********

consensus_16242#0      AGATTTGGTTTCCATTGTAAAAAAAAAATTGTGCAGCTGTATCAATGTACATGAATGAGG 713
consensus_16242#1      AGATTTG-TTCCCATTGTATTGTATTGTTTG--CCACCCCA-CAATGTACATGAATGAGG 328
                       ******* ** ********    *    ***  *  *   * ******************

consensus_16242#0      AAGGCAGGCAGGTCAGTTGTTGAAGAGAAGAAGAGCATATTAGGAGTAGGTGGGAGGGGT 773
consensus_16242#1      AAGCCAGCAA-------------------------------------------------- 338
                       *** ***  *                                                  

consensus_16242#0      AGCCGGCTGGTGCTGCTCGTCTTTGAAGTAGTTGCAGGTGATGAAGACGCCGCCGTTGAA 833
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      GCACTCGGCGCGGGCGCAGCCGATCCTGGTGAAGTTGGGCCTGACCATGAAGGCGAAGTG 893
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      GCCGCACTCGTGGAAGTCGACGCCGGCGGTGCATTTGCCGGTGTCCCTGTCGTAGAGGTG 953
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      CTCCTCGTCGCCCCAGCATCGGACGGCGTCGGAAGCCCTGGCGTTCCAGCCGTTCCTCCC 1013
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      GATGTAGAGGCTCTCGGCGAAGCTGTTGCCGGTGGAGTGGCGGATCTGGCAGTCGCCGCG 1073
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      CATGGCGTCGGACCACCGCCGCGCCTGCCTCGCCAGCTTGTTATCCCACCTCATCGGCTG 1133
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      CAGCCCGTAGCGCGCGCGCAGCTGGTTGTGGCCGTCCACGAACTCCCGCGGCATCCCCTT 1193
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      GTACCAACCCATCCCATTGGTCCACGACACCAACCACCCCGCTGGTGCCGATGCTGATGC 1253
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      GTCGTCGTTGAACCAACACATCGCGTCGCCCACAGACAGCAGCAGAAACCAACACAATAG 1313
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      CAATAGTAATGGGAGGATCATCGCGGCGGCGGCCATTGTCTGCCGTCGTCCCGACGAGGA 1373
consensus_16242#1      ------------------------------------------------------------
                                                                                   

consensus_16242#0      CGAGGCCGCCC 1384
consensus_16242#1      -----------
                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)