cluster # 163

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Oryza sativa
cluster # 163 cluster # 163 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_163#0 length = 177 sequences # 1

consensus_163#1 length = 145 sequences # 1

consensusID : consensus_163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [TTTGTCAGTTTCTTCCTCATTCTTCACATCCTCCTTAGTTTCCACANCTTTCTCACCTACTTGTAATTCTTCTCTNGGCTTTTACTCCACTTGAGTAGACAGAGGTACTTGTTTCTCTGCTTTTACAAGCAATGATCCTGACTCTGAGGNGCCAGCCTCTTCACCAGCTCAGTATCT]

[+] EMBL AA750355             [TTTGTCAGTTTCTTCCTCATTCTTCACATCCTCCTTAGTTTCCACANCTTTCTCACCTACTTGTAATTCTTCTCTNGGCTTTTACTCCACTTGAGTAGACAGAGGTACTTGTTTCTCTGCTTTTACAAGCAATGATCCTGACTCTGAGGNGCCAGCCTCTTCACCAGCTCAGTATCT]




>consensus_163#0
TTTGTCAGTTTCTTCCTCATTCTTCACATCCTCCTTAGTTTCCACANCTTTCTCACCTAC
TTGTAATTCTTCTCTNGGCTTTTACTCCACTTGAGTAGACAGAGGTACTTGTTTCTCTGC
TTTTACAAGCAATGATCCTGACTCTGAGGNGCCAGCCTCTTCACCAGCTCAGTATCT

consensusID : consensus_163#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 145
fasta sequence

                              [CTCTTCACTTTTGTCAGTTTCTNNCTCATTCTTCACATCCTCCTTAGTTTCCNNGNCTTTCTNACCTACTTGTAATTCTTCTCTNGGCTTTTNCTCCACTTGAGTAGACAGAGGTTCTTGTTTCTCTNCTTTNACAGAGCAATGA]

[+] EMBL AA750317             [CTCTTCACTTTTGTCAGTTTCTNNCTCATTCTTCACATCCTCCTTAGTTTCCNNGNCTTTCTNACCTACTTGTAATTCTTCTCTNGGCTTTTNCTCCACTTGAGTAGACAGAGGTTCTTGTTTCTCTNCTTTNACAGAGCAATGA]




>consensus_163#1
CTCTTCACTTTTGTCAGTTTCTNNCTCATTCTTCACATCCTCCTTAGTTTCCNNGNCTTT
CTNACCTACTTGTAATTCTTCTCTNGGCTTTTNCTCCACTTGAGTAGACAGAGGTTCTTG
TTTCTCTNCTTTNACAGAGCAATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_163#0      ---------TTTGTCAGTTTCTTCCTCATTCTTCACATCCTCCTTAGTTTCCACANCTTT 51
consensus_163#1      CTCTTCACTTTTGTCAGTTTCTNNCTCATTCTTCACATCCTCCTTAGTTTCCNNGNCTTT 60
                              *************  ****************************   *****

consensus_163#0      CTCACCTACTTGTAATTCTTCTCTNGGCTTTTACTCCACTTGAGTAGACAGAGGTACTTG 111
consensus_163#1      CTNACCTACTTGTAATTCTTCTCTNGGCTTTTNCTCCACTTGAGTAGACAGAGGTTCTTG 120
                     ** ***************************** ********************** ****

consensus_163#0      TTTCTCTGCTTTTACA-AGCAATGATCCTGACTCTGAGGNGCCAGCCTCTTCACCAGCTC 170
consensus_163#1      TTTCTCTNCTTTNACAGAGCAATGA----------------------------------- 145
                     ******* **** *** ********                                   

consensus_163#0      AGTATCT 177
consensus_163#1      -------