cluster # 1630

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Oryza sativa
cluster # 1630 cluster # 1630 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1630#0 length = 909 sequences # 1

consensus_1630#1 length = 851 sequences # 1

consensusID : consensus_1630#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 909
fasta sequence

                              [TGGCTTGGCAAAGCCAGCGAGCGCCCTTGATATCGACGGCCACGCCTCCTCCAACCTCGTCTGCACCCACGCCACCAACGACCACCGAAATACCGTCAAAATGGCCCGTCGTCCCGCGAGATGTTACCGTTACTGCAAGAACAAGCCGTACCCTAAGTCGCGCTTCAACCGTGGTGTCCCCGACCCCAAGATTCGCATCTTCGATCTCGGTCGCAAGAAGGCCAACGTCGACGAGTTCCCCCTCTGCGTTCACCTCGTCTCCAACGAGTATGAGCAGGTCTCCTCTGAGGCCCTCGAGGCTGCCCGTATTTGCGCCAACAAGTACATGGTGAAGACCGCCGGAAAGGAAGCCTTCCACCTCCGCGTCCGCGCCCACCCCTACCACGTCGTCCGTATCAACAAGATGTTGTCTTGCGCCGGTGCCGATAGACTTCAGACTGGTATGCGTGGTGCCTTCGGCAAGCCCAACGGCCTTGTCGCCCGTGTCAACATTGGCCAGATCATCCTTTCTTGCCGTACTCGCGACGCCCTCCGCCCCAACGTCATTGAGGCTCTCCGTCGCTCCCAGTACAAGTTCCCCGGTCGCCAAAAGATCATCGTCTCCAAGAACTGGGGCTTCACTCCCCTCCGCCGTGAGGAGTACGTCGCCAAGCGCCAGTCTGGCCAGGTCCGTGTCGACGGTGCCTACGTCCAGTTCCTCAGCACCAGGGGTCCCCTTGAGTACAACATGCGCCGTTTCCCCGAGGCCTTCGAGACTGAGGCTTAGATACCCCAGTCCAAGGACATTCGGTGTGGTGGCGAGGAGGCTAGTTGGAGGGCAGGCATGAAAGTATACCGGCGTTGGTAGAATATGTTTGCTTCCCTTCTTTTTTCGGAACGCCTCTGAGCCGCTAGATGACAATGAAAGCA]

[+] EMBL AK119983             [TGGCTTGGCAAAGCCAGCGAGCGCCCTTGATATCGACGGCCACGCCTCCTCCAACCTCGTCTGCACCCACGCCACCAACGACCACCGAAATACCGTCAAAATGGCCCGTCGTCCCGCGAGATGTTACCGTTACTGCAAGAACAAGCCGTACCCTAAGTCGCGCTTCAACCGTGGTGTCCCCGACCCCAAGATTCGCATCTTCGATCTCGGTCGCAAGAAGGCCAACGTCGACGAGTTCCCCCTCTGCGTTCACCTCGTCTCCAACGAGTATGAGCAGGTCTCCTCTGAGGCCCTCGAGGCTGCCCGTATTTGCGCCAACAAGTACATGGTGAAGACCGCCGGAAAGGAAGCCTTCCACCTCCGCGTCCGCGCCCACCCCTACCACGTCGTCCGTATCAACAAGATGTTGTCTTGCGCCGGTGCCGATAGACTTCAGACTGGTATGCGTGGTGCCTTCGGCAAGCCCAACGGCCTTGTCGCCCGTGTCAACATTGGCCAGATCATCCTTTCTTGCCGTACTCGCGACGCCCTCCGCCCCAACGTCATTGAGGCTCTCCGTCGCTCCCAGTACAAGTTCCCCGGTCGCCAAAAGATCATCGTCTCCAAGAACTGGGGCTTCACTCCCCTCCGCCGTGAGGAGTACGTCGCCAAGCGCCAGTCTGGCCAGGTCCGTGTCGACGGTGCCTACGTCCAGTTCCTCAGCACCAGGGGTCCCCTTGAGTACAACATGCGCCGTTTCCCCGAGGCCTTCGAGACTGAGGCTTAGATACCCCAGTCCAAGGACATTCGGTGTGGTGGCGAGGAGGCTAGTTGGAGGGCAGGCATGAAAGTATACCGGCGTTGGTAGAATATGTTTGCTTCCCTTCTTTTTTCGGAACGCCTCTGAGCCGCTAGATGACAATGAAAGCA]




>consensus_1630#0
TGGCTTGGCAAAGCCAGCGAGCGCCCTTGATATCGACGGCCACGCCTCCTCCAACCTCGT
CTGCACCCACGCCACCAACGACCACCGAAATACCGTCAAAATGGCCCGTCGTCCCGCGAG
ATGTTACCGTTACTGCAAGAACAAGCCGTACCCTAAGTCGCGCTTCAACCGTGGTGTCCC
CGACCCCAAGATTCGCATCTTCGATCTCGGTCGCAAGAAGGCCAACGTCGACGAGTTCCC
CCTCTGCGTTCACCTCGTCTCCAACGAGTATGAGCAGGTCTCCTCTGAGGCCCTCGAGGC
TGCCCGTATTTGCGCCAACAAGTACATGGTGAAGACCGCCGGAAAGGAAGCCTTCCACCT
CCGCGTCCGCGCCCACCCCTACCACGTCGTCCGTATCAACAAGATGTTGTCTTGCGCCGG
TGCCGATAGACTTCAGACTGGTATGCGTGGTGCCTTCGGCAAGCCCAACGGCCTTGTCGC
CCGTGTCAACATTGGCCAGATCATCCTTTCTTGCCGTACTCGCGACGCCCTCCGCCCCAA
CGTCATTGAGGCTCTCCGTCGCTCCCAGTACAAGTTCCCCGGTCGCCAAAAGATCATCGT
CTCCAAGAACTGGGGCTTCACTCCCCTCCGCCGTGAGGAGTACGTCGCCAAGCGCCAGTC
TGGCCAGGTCCGTGTCGACGGTGCCTACGTCCAGTTCCTCAGCACCAGGGGTCCCCTTGA
GTACAACATGCGCCGTTTCCCCGAGGCCTTCGAGACTGAGGCTTAGATACCCCAGTCCAA
GGACATTCGGTGTGGTGGCGAGGAGGCTAGTTGGAGGGCAGGCATGAAAGTATACCGGCG
TTGGTAGAATATGTTTGCTTCCCTTCTTTTTTCGGAACGCCTCTGAGCCGCTAGATGACA
ATGAAAGCA

consensusID : consensus_1630#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 851
fasta sequence

                              [CGACATCCAACACCCAGTTCGCAGGAAGTGCATTCACCCCATTTCCAGCACTCAAAATGGCCCGCCGTCCCGCACGTTGCTACCGGTACTGCAAGAACAAGCCGTACCCTAAGTCCCGTTTCAACCGTGGTGTTCCCGACCCCAAGATTCGCATCTTCGACCTTGGTCGCAAGAAGGCTTCCGTCGATGACTTCCCCATGTGTGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCTCCGAGGCTCTTGAGGCCGCCCGTATCTGTGCCAACAAGTACCTCGTGAAGATCGCTGGTAAGGAAGGTTTCCACCTGCGTGTCCGTGTCCACCCCTTCCACGTCGTCCGTATCAACAAGATGTTGTCGTGCGCTGGTGCCGATCGTCTGCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGGTCTCGTCGCCCGTGTGAACATTGGCCAGATTCTTCTGTCCGTCCGCACCCGTGACTCCAACCGTGCCGCCGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTCGCCAAAAGATCATTGTCTCCAAGAACTGGGGTTTCACCCCCGTTCGCCGCGAGGAGTACGTCCAGCTCCGCCAGGAGGGCAAGCTCCGCCAGGACGGTGCCTACGTTCAGTTCCTCCGTGGCCACGGTCTGATCGAGGAGAACATGAAGCGCTTCCCCGAGGCCTACGAGAACGTTTCTCAGGCTTAGATGGTTATTGGATGAATCCAGAATACGAATTCAGAACGAAAAAATTACATGGATGTTCTATTAACTGTCTCCTTCCTGTTTAACAAAGCTTGATATCTCGTCTGCAATCTTAATGGAGTTCTT]

[+] EMBL AK110755             [CGACATCCAACACCCAGTTCGCAGGAAGTGCATTCACCCCATTTCCAGCACTCAAAATGGCCCGCCGTCCCGCACGTTGCTACCGGTACTGCAAGAACAAGCCGTACCCTAAGTCCCGTTTCAACCGTGGTGTTCCCGACCCCAAGATTCGCATCTTCGACCTTGGTCGCAAGAAGGCTTCCGTCGATGACTTCCCCATGTGTGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCTCCGAGGCTCTTGAGGCCGCCCGTATCTGTGCCAACAAGTACCTCGTGAAGATCGCTGGTAAGGAAGGTTTCCACCTGCGTGTCCGTGTCCACCCCTTCCACGTCGTCCGTATCAACAAGATGTTGTCGTGCGCTGGTGCCGATCGTCTGCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGGTCTCGTCGCCCGTGTGAACATTGGCCAGATTCTTCTGTCCGTCCGCACCCGTGACTCCAACCGTGCCGCCGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTCGCCAAAAGATCATTGTCTCCAAGAACTGGGGTTTCACCCCCGTTCGCCGCGAGGAGTACGTCCAGCTCCGCCAGGAGGGCAAGCTCCGCCAGGACGGTGCCTACGTTCAGTTCCTCCGTGGCCACGGTCTGATCGAGGAGAACATGAAGCGCTTCCCCGAGGCCTACGAGAACGTTTCTCAGGCTTAGATGGTTATTGGATGAATCCAGAATACGAATTCAGAACGAAAAAATTACATGGATGTTCTATTAACTGTCTCCTTCCTGTTTAACAAAGCTTGATATCTCGTCTGCAATCTTAATGGAGTTCTT]




>consensus_1630#1
CGACATCCAACACCCAGTTCGCAGGAAGTGCATTCACCCCATTTCCAGCACTCAAAATGG
CCCGCCGTCCCGCACGTTGCTACCGGTACTGCAAGAACAAGCCGTACCCTAAGTCCCGTT
TCAACCGTGGTGTTCCCGACCCCAAGATTCGCATCTTCGACCTTGGTCGCAAGAAGGCTT
CCGTCGATGACTTCCCCATGTGTGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCT
CCGAGGCTCTTGAGGCCGCCCGTATCTGTGCCAACAAGTACCTCGTGAAGATCGCTGGTA
AGGAAGGTTTCCACCTGCGTGTCCGTGTCCACCCCTTCCACGTCGTCCGTATCAACAAGA
TGTTGTCGTGCGCTGGTGCCGATCGTCTGCAGACCGGTATGCGTGGTGCCTTCGGTAAGC
CCCAGGGTCTCGTCGCCCGTGTGAACATTGGCCAGATTCTTCTGTCCGTCCGCACCCGTG
ACTCCAACCGTGCCGCCGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTC
GCCAAAAGATCATTGTCTCCAAGAACTGGGGTTTCACCCCCGTTCGCCGCGAGGAGTACG
TCCAGCTCCGCCAGGAGGGCAAGCTCCGCCAGGACGGTGCCTACGTTCAGTTCCTCCGTG
GCCACGGTCTGATCGAGGAGAACATGAAGCGCTTCCCCGAGGCCTACGAGAACGTTTCTC
AGGCTTAGATGGTTATTGGATGAATCCAGAATACGAATTCAGAACGAAAAAATTACATGG
ATGTTCTATTAACTGTCTCCTTCCTGTTTAACAAAGCTTGATATCTCGTCTGCAATCTTA
ATGGAGTTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1630#0      TGGCTTGGCAAAGCCAGCGAGCGCCCTTGATATCGACGGCCACGCCTCCTCCAACCTCGT 60
consensus_1630#1      ------------------------------------------CGACATCCAACACCCAGT 18
                                                                ** *  *    ***  **

consensus_1630#0      CTGCACCCACGCCACCAACGACCACCGAAATACCGTCAAAATGGCCCGTCGTCCCGCGAG 120
consensus_1630#1      TCGCAGGAAGTGCATTCACCCCATTTCCAGCAC--TCAAAATGGCCCGCCGTCCCGCACG 76
                        ***   *   **   **  *      *  **  ************* ********  *

consensus_1630#0      ATGTTACCGTTACTGCAAGAACAAGCCGTACCCTAAGTCGCGCTTCAACCGTGGTGTCCC 180
consensus_1630#1      TTGCTACCGGTACTGCAAGAACAAGCCGTACCCTAAGTCCCGTTTCAACCGTGGTGTTCC 136
                       ** ***** ***************************** ** ************** **

consensus_1630#0      CGACCCCAAGATTCGCATCTTCGATCTCGGTCGCAAGAAGGCCAACGTCGACGAGTTCCC 240
consensus_1630#1      CGACCCCAAGATTCGCATCTTCGACCTTGGTCGCAAGAAGGCTTCCGTCGATGACTTCCC 196
                      ************************ ** **************   ****** ** *****

consensus_1630#0      CCTCTGCGTTCACCTCGTCTCCAACGAGTATGAGCAGGTCTCCTCTGAGGCCCTCGAGGC 300
consensus_1630#1      CATGTGTGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCTCCGAGGCTCTTGAGGC 256
                      * * ** *********************** ****** * ***** ***** ** *****

consensus_1630#0      TGCCCGTATTTGCGCCAACAAGTACATGGTGAAGACCGCCGGAAAGGAAGCCTTCCACCT 360
consensus_1630#1      CGCCCGTATCTGTGCCAACAAGTACCTCGTGAAGATCGCTGGTAAGGAAGGTTTCCACCT 316
                       ******** ** ************ * ******* *** ** *******  ********

consensus_1630#0      CCGCGTCCGCGCCCACCCCTACCACGTCGTCCGTATCAACAAGATGTTGTCTTGCGCCGG 420
consensus_1630#1      GCGTGTCCGTGTCCACCCCTTCCACGTCGTCCGTATCAACAAGATGTTGTCGTGCGCTGG 376
                       ** ***** * ******** ****************************** ***** **

consensus_1630#0      TGCCGATAGACTTCAGACTGGTATGCGTGGTGCCTTCGGCAAGCCCAACGGCCTTGTCGC 480
consensus_1630#1      TGCCGATCGTCTGCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGGTCTCGTCGC 436
                      ******* * ** ***** ******************** ****** * ** ** *****

consensus_1630#0      CCGTGTCAACATTGGCCAGATCATCCTTTCTTGCCGTACTCGCGACGCCCTCCGCCCCAA 540
consensus_1630#1      CCGTGTGAACATTGGCCAGATTCTTCTGTCCGTCCGCACCCGTGACTCCAACCGTGCCGC 496
                      ****** **************  * ** **   *** ** ** *** **  ***  **  

consensus_1630#0      CGTCATTGAGGCTCTCCGTCGCTCCCAGTACAAGTTCCCCGGTCGCCAAAAGATCATCGT 600
consensus_1630#1      CGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTCGCCAAAAGATCATTGT 556
                      ** *** *********** ******  ****************************** **

consensus_1630#0      CTCCAAGAACTGGGGCTTCACTCCCCTCCGCCGTGAGGAGTACGTCGCCAAGCGCCAGTC 660
consensus_1630#1      CTCCAAGAACTGGGGTTTCACCCCCGTTCGCCGCGAGGAGTACGTCCAGCTCCGCCAGGA 616
                      *************** ***** *** * ***** ************      ******  

consensus_1630#0      TGGCCAGGTCCGTGTCGACGGTGCCTACGTCCAGTTCCTCAGCACCAGGGGTCCCCTTGA 720
consensus_1630#1      GGGCAAGCTCCGCCAGGACGGTGCCTACGTTCAGTTCCTCCGTGGCCACGGTCTGATCGA 676
                       *** ** ****    ************** ********* *   *   ****   * **

consensus_1630#0      GTACAACATGCGCCGTTTCCCCGAGGCCTTCGAGACTGAGGCTTAGATACCCCAGTCCAA 780
consensus_1630#1      GGAGAACATGAAGCGCTTCCCCGAGGCCTACGAGAACGTTTCTCAGG---CTTAG---AT 730
                      * * ******   ** ************* *****  *   ** **    *  **   * 

consensus_1630#0      GGACATTCGGTGTGGTGGCGAGGAGGCTAGTTGGAGGGCAGGCATGAAAGTATACCGGCG 840
consensus_1630#1      GGTTATTGGATGAAT---CCAGAATACGAATTC-AGAACG---AAAAAATTACATGGATG 783
                      **  *** * **      * ** *  * * **  **  *    *  *** ** *  *  *

consensus_1630#0      TTGGTAGAATATGTTTGCTTCCCTTCTTTTTTCGGAACGCCTCTGAGCCGCTAGATGACA 900
consensus_1630#1      TTC-TATTAACTGTCTCCTTCCTGTTTAACAAAGCTTGATATCTCGTCTGC--AATCTTA 840
                      **  **  *  *** * *****  * *      *       ***   * **   **   *

consensus_1630#0      ATGAAAGCA-- 909
consensus_1630#1      ATGGAGTTCTT 851
                      *** *