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Oryza sativa
cluster # 1630 cluster # 1630       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1630#0 length = 909 sequences # 1  
consensus_1630#1 length = 851 sequences # 1  

consensusID : consensus_1630#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 909
fasta sequence
                              [TGGCTTGGCAAAGCCAGCGAGCGCCCTTGATATCGACGGCCACGCCTCCTCCAACCTCGTCTGCACCCACGCCACCAACGACCACCGAAATACCGTCAAAATGGCCCGTCGTCCCGCGAGATGTTACCGTTACTGCAAGAACAAGCCGTACCCTAAGTCGCGCTTCAACCGTGGTGTCCCCGACCCCAAGATTCGCATCTTCGATCTCGGTCGCAAGAAGGCCAACGTCGACGAGTTCCCCCTCTGCGTTCACCTCGTCTCCAACGAGTATGAGCAGGTCTCCTCTGAGGCCCTCGAGGCTGCCCGTATTTGCGCCAACAAGTACATGGTGAAGACCGCCGGAAAGGAAGCCTTCCACCTCCGCGTCCGCGCCCACCCCTACCACGTCGTCCGTATCAACAAGATGTTGTCTTGCGCCGGTGCCGATAGACTTCAGACTGGTATGCGTGGTGCCTTCGGCAAGCCCAACGGCCTTGTCGCCCGTGTCAACATTGGCCAGATCATCCTTTCTTGCCGTACTCGCGACGCCCTCCGCCCCAACGTCATTGAGGCTCTCCGTCGCTCCCAGTACAAGTTCCCCGGTCGCCAAAAGATCATCGTCTCCAAGAACTGGGGCTTCACTCCCCTCCGCCGTGAGGAGTACGTCGCCAAGCGCCAGTCTGGCCAGGTCCGTGTCGACGGTGCCTACGTCCAGTTCCTCAGCACCAGGGGTCCCCTTGAGTACAACATGCGCCGTTTCCCCGAGGCCTTCGAGACTGAGGCTTAGATACCCCAGTCCAAGGACATTCGGTGTGGTGGCGAGGAGGCTAGTTGGAGGGCAGGCATGAAAGTATACCGGCGTTGGTAGAATATGTTTGCTTCCCTTCTTTTTTCGGAACGCCTCTGAGCCGCTAGATGACAATGAAAGCA]

[+] EMBL AK119983             [TGGCTTGGCAAAGCCAGCGAGCGCCCTTGATATCGACGGCCACGCCTCCTCCAACCTCGTCTGCACCCACGCCACCAACGACCACCGAAATACCGTCAAAATGGCCCGTCGTCCCGCGAGATGTTACCGTTACTGCAAGAACAAGCCGTACCCTAAGTCGCGCTTCAACCGTGGTGTCCCCGACCCCAAGATTCGCATCTTCGATCTCGGTCGCAAGAAGGCCAACGTCGACGAGTTCCCCCTCTGCGTTCACCTCGTCTCCAACGAGTATGAGCAGGTCTCCTCTGAGGCCCTCGAGGCTGCCCGTATTTGCGCCAACAAGTACATGGTGAAGACCGCCGGAAAGGAAGCCTTCCACCTCCGCGTCCGCGCCCACCCCTACCACGTCGTCCGTATCAACAAGATGTTGTCTTGCGCCGGTGCCGATAGACTTCAGACTGGTATGCGTGGTGCCTTCGGCAAGCCCAACGGCCTTGTCGCCCGTGTCAACATTGGCCAGATCATCCTTTCTTGCCGTACTCGCGACGCCCTCCGCCCCAACGTCATTGAGGCTCTCCGTCGCTCCCAGTACAAGTTCCCCGGTCGCCAAAAGATCATCGTCTCCAAGAACTGGGGCTTCACTCCCCTCCGCCGTGAGGAGTACGTCGCCAAGCGCCAGTCTGGCCAGGTCCGTGTCGACGGTGCCTACGTCCAGTTCCTCAGCACCAGGGGTCCCCTTGAGTACAACATGCGCCGTTTCCCCGAGGCCTTCGAGACTGAGGCTTAGATACCCCAGTCCAAGGACATTCGGTGTGGTGGCGAGGAGGCTAGTTGGAGGGCAGGCATGAAAGTATACCGGCGTTGGTAGAATATGTTTGCTTCCCTTCTTTTTTCGGAACGCCTCTGAGCCGCTAGATGACAATGAAAGCA]


>consensus_1630#0 TGGCTTGGCAAAGCCAGCGAGCGCCCTTGATATCGACGGCCACGCCTCCTCCAACCTCGT CTGCACCCACGCCACCAACGACCACCGAAATACCGTCAAAATGGCCCGTCGTCCCGCGAG ATGTTACCGTTACTGCAAGAACAAGCCGTACCCTAAGTCGCGCTTCAACCGTGGTGTCCC CGACCCCAAGATTCGCATCTTCGATCTCGGTCGCAAGAAGGCCAACGTCGACGAGTTCCC CCTCTGCGTTCACCTCGTCTCCAACGAGTATGAGCAGGTCTCCTCTGAGGCCCTCGAGGC TGCCCGTATTTGCGCCAACAAGTACATGGTGAAGACCGCCGGAAAGGAAGCCTTCCACCT CCGCGTCCGCGCCCACCCCTACCACGTCGTCCGTATCAACAAGATGTTGTCTTGCGCCGG TGCCGATAGACTTCAGACTGGTATGCGTGGTGCCTTCGGCAAGCCCAACGGCCTTGTCGC CCGTGTCAACATTGGCCAGATCATCCTTTCTTGCCGTACTCGCGACGCCCTCCGCCCCAA CGTCATTGAGGCTCTCCGTCGCTCCCAGTACAAGTTCCCCGGTCGCCAAAAGATCATCGT CTCCAAGAACTGGGGCTTCACTCCCCTCCGCCGTGAGGAGTACGTCGCCAAGCGCCAGTC TGGCCAGGTCCGTGTCGACGGTGCCTACGTCCAGTTCCTCAGCACCAGGGGTCCCCTTGA GTACAACATGCGCCGTTTCCCCGAGGCCTTCGAGACTGAGGCTTAGATACCCCAGTCCAA GGACATTCGGTGTGGTGGCGAGGAGGCTAGTTGGAGGGCAGGCATGAAAGTATACCGGCG TTGGTAGAATATGTTTGCTTCCCTTCTTTTTTCGGAACGCCTCTGAGCCGCTAGATGACA ATGAAAGCA



consensusID : consensus_1630#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 851
fasta sequence
                              [CGACATCCAACACCCAGTTCGCAGGAAGTGCATTCACCCCATTTCCAGCACTCAAAATGGCCCGCCGTCCCGCACGTTGCTACCGGTACTGCAAGAACAAGCCGTACCCTAAGTCCCGTTTCAACCGTGGTGTTCCCGACCCCAAGATTCGCATCTTCGACCTTGGTCGCAAGAAGGCTTCCGTCGATGACTTCCCCATGTGTGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCTCCGAGGCTCTTGAGGCCGCCCGTATCTGTGCCAACAAGTACCTCGTGAAGATCGCTGGTAAGGAAGGTTTCCACCTGCGTGTCCGTGTCCACCCCTTCCACGTCGTCCGTATCAACAAGATGTTGTCGTGCGCTGGTGCCGATCGTCTGCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGGTCTCGTCGCCCGTGTGAACATTGGCCAGATTCTTCTGTCCGTCCGCACCCGTGACTCCAACCGTGCCGCCGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTCGCCAAAAGATCATTGTCTCCAAGAACTGGGGTTTCACCCCCGTTCGCCGCGAGGAGTACGTCCAGCTCCGCCAGGAGGGCAAGCTCCGCCAGGACGGTGCCTACGTTCAGTTCCTCCGTGGCCACGGTCTGATCGAGGAGAACATGAAGCGCTTCCCCGAGGCCTACGAGAACGTTTCTCAGGCTTAGATGGTTATTGGATGAATCCAGAATACGAATTCAGAACGAAAAAATTACATGGATGTTCTATTAACTGTCTCCTTCCTGTTTAACAAAGCTTGATATCTCGTCTGCAATCTTAATGGAGTTCTT]

[+] EMBL AK110755             [CGACATCCAACACCCAGTTCGCAGGAAGTGCATTCACCCCATTTCCAGCACTCAAAATGGCCCGCCGTCCCGCACGTTGCTACCGGTACTGCAAGAACAAGCCGTACCCTAAGTCCCGTTTCAACCGTGGTGTTCCCGACCCCAAGATTCGCATCTTCGACCTTGGTCGCAAGAAGGCTTCCGTCGATGACTTCCCCATGTGTGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCTCCGAGGCTCTTGAGGCCGCCCGTATCTGTGCCAACAAGTACCTCGTGAAGATCGCTGGTAAGGAAGGTTTCCACCTGCGTGTCCGTGTCCACCCCTTCCACGTCGTCCGTATCAACAAGATGTTGTCGTGCGCTGGTGCCGATCGTCTGCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGGTCTCGTCGCCCGTGTGAACATTGGCCAGATTCTTCTGTCCGTCCGCACCCGTGACTCCAACCGTGCCGCCGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTCGCCAAAAGATCATTGTCTCCAAGAACTGGGGTTTCACCCCCGTTCGCCGCGAGGAGTACGTCCAGCTCCGCCAGGAGGGCAAGCTCCGCCAGGACGGTGCCTACGTTCAGTTCCTCCGTGGCCACGGTCTGATCGAGGAGAACATGAAGCGCTTCCCCGAGGCCTACGAGAACGTTTCTCAGGCTTAGATGGTTATTGGATGAATCCAGAATACGAATTCAGAACGAAAAAATTACATGGATGTTCTATTAACTGTCTCCTTCCTGTTTAACAAAGCTTGATATCTCGTCTGCAATCTTAATGGAGTTCTT]


>consensus_1630#1 CGACATCCAACACCCAGTTCGCAGGAAGTGCATTCACCCCATTTCCAGCACTCAAAATGG CCCGCCGTCCCGCACGTTGCTACCGGTACTGCAAGAACAAGCCGTACCCTAAGTCCCGTT TCAACCGTGGTGTTCCCGACCCCAAGATTCGCATCTTCGACCTTGGTCGCAAGAAGGCTT CCGTCGATGACTTCCCCATGTGTGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCT CCGAGGCTCTTGAGGCCGCCCGTATCTGTGCCAACAAGTACCTCGTGAAGATCGCTGGTA AGGAAGGTTTCCACCTGCGTGTCCGTGTCCACCCCTTCCACGTCGTCCGTATCAACAAGA TGTTGTCGTGCGCTGGTGCCGATCGTCTGCAGACCGGTATGCGTGGTGCCTTCGGTAAGC CCCAGGGTCTCGTCGCCCGTGTGAACATTGGCCAGATTCTTCTGTCCGTCCGCACCCGTG ACTCCAACCGTGCCGCCGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTC GCCAAAAGATCATTGTCTCCAAGAACTGGGGTTTCACCCCCGTTCGCCGCGAGGAGTACG TCCAGCTCCGCCAGGAGGGCAAGCTCCGCCAGGACGGTGCCTACGTTCAGTTCCTCCGTG GCCACGGTCTGATCGAGGAGAACATGAAGCGCTTCCCCGAGGCCTACGAGAACGTTTCTC AGGCTTAGATGGTTATTGGATGAATCCAGAATACGAATTCAGAACGAAAAAATTACATGG ATGTTCTATTAACTGTCTCCTTCCTGTTTAACAAAGCTTGATATCTCGTCTGCAATCTTA ATGGAGTTCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1630#0      TGGCTTGGCAAAGCCAGCGAGCGCCCTTGATATCGACGGCCACGCCTCCTCCAACCTCGT 60
consensus_1630#1      ------------------------------------------CGACATCCAACACCCAGT 18
                                                                ** *  *    ***  **

consensus_1630#0      CTGCACCCACGCCACCAACGACCACCGAAATACCGTCAAAATGGCCCGTCGTCCCGCGAG 120
consensus_1630#1      TCGCAGGAAGTGCATTCACCCCATTTCCAGCAC--TCAAAATGGCCCGCCGTCCCGCACG 76
                        ***   *   **   **  *      *  **  ************* ********  *

consensus_1630#0      ATGTTACCGTTACTGCAAGAACAAGCCGTACCCTAAGTCGCGCTTCAACCGTGGTGTCCC 180
consensus_1630#1      TTGCTACCGGTACTGCAAGAACAAGCCGTACCCTAAGTCCCGTTTCAACCGTGGTGTTCC 136
                       ** ***** ***************************** ** ************** **

consensus_1630#0      CGACCCCAAGATTCGCATCTTCGATCTCGGTCGCAAGAAGGCCAACGTCGACGAGTTCCC 240
consensus_1630#1      CGACCCCAAGATTCGCATCTTCGACCTTGGTCGCAAGAAGGCTTCCGTCGATGACTTCCC 196
                      ************************ ** **************   ****** ** *****

consensus_1630#0      CCTCTGCGTTCACCTCGTCTCCAACGAGTATGAGCAGGTCTCCTCTGAGGCCCTCGAGGC 300
consensus_1630#1      CATGTGTGTTCACCTCGTCTCCAACGAGTACGAGCAGCTGTCCTCCGAGGCTCTTGAGGC 256
                      * * ** *********************** ****** * ***** ***** ** *****

consensus_1630#0      TGCCCGTATTTGCGCCAACAAGTACATGGTGAAGACCGCCGGAAAGGAAGCCTTCCACCT 360
consensus_1630#1      CGCCCGTATCTGTGCCAACAAGTACCTCGTGAAGATCGCTGGTAAGGAAGGTTTCCACCT 316
                       ******** ** ************ * ******* *** ** *******  ********

consensus_1630#0      CCGCGTCCGCGCCCACCCCTACCACGTCGTCCGTATCAACAAGATGTTGTCTTGCGCCGG 420
consensus_1630#1      GCGTGTCCGTGTCCACCCCTTCCACGTCGTCCGTATCAACAAGATGTTGTCGTGCGCTGG 376
                       ** ***** * ******** ****************************** ***** **

consensus_1630#0      TGCCGATAGACTTCAGACTGGTATGCGTGGTGCCTTCGGCAAGCCCAACGGCCTTGTCGC 480
consensus_1630#1      TGCCGATCGTCTGCAGACCGGTATGCGTGGTGCCTTCGGTAAGCCCCAGGGTCTCGTCGC 436
                      ******* * ** ***** ******************** ****** * ** ** *****

consensus_1630#0      CCGTGTCAACATTGGCCAGATCATCCTTTCTTGCCGTACTCGCGACGCCCTCCGCCCCAA 540
consensus_1630#1      CCGTGTGAACATTGGCCAGATTCTTCTGTCCGTCCGCACCCGTGACTCCAACCGTGCCGC 496
                      ****** **************  * ** **   *** ** ** *** **  ***  **  

consensus_1630#0      CGTCATTGAGGCTCTCCGTCGCTCCCAGTACAAGTTCCCCGGTCGCCAAAAGATCATCGT 600
consensus_1630#1      CGCCATCGAGGCTCTCCGCCGCTCCATGTACAAGTTCCCCGGTCGCCAAAAGATCATTGT 556
                      ** *** *********** ******  ****************************** **

consensus_1630#0      CTCCAAGAACTGGGGCTTCACTCCCCTCCGCCGTGAGGAGTACGTCGCCAAGCGCCAGTC 660
consensus_1630#1      CTCCAAGAACTGGGGTTTCACCCCCGTTCGCCGCGAGGAGTACGTCCAGCTCCGCCAGGA 616
                      *************** ***** *** * ***** ************      ******  

consensus_1630#0      TGGCCAGGTCCGTGTCGACGGTGCCTACGTCCAGTTCCTCAGCACCAGGGGTCCCCTTGA 720
consensus_1630#1      GGGCAAGCTCCGCCAGGACGGTGCCTACGTTCAGTTCCTCCGTGGCCACGGTCTGATCGA 676
                       *** ** ****    ************** ********* *   *   ****   * **

consensus_1630#0      GTACAACATGCGCCGTTTCCCCGAGGCCTTCGAGACTGAGGCTTAGATACCCCAGTCCAA 780
consensus_1630#1      GGAGAACATGAAGCGCTTCCCCGAGGCCTACGAGAACGTTTCTCAGG---CTTAG---AT 730
                      * * ******   ** ************* *****  *   ** **    *  **   * 

consensus_1630#0      GGACATTCGGTGTGGTGGCGAGGAGGCTAGTTGGAGGGCAGGCATGAAAGTATACCGGCG 840
consensus_1630#1      GGTTATTGGATGAAT---CCAGAATACGAATTC-AGAACG---AAAAAATTACATGGATG 783
                      **  *** * **      * ** *  * * **  **  *    *  *** ** *  *  *

consensus_1630#0      TTGGTAGAATATGTTTGCTTCCCTTCTTTTTTCGGAACGCCTCTGAGCCGCTAGATGACA 900
consensus_1630#1      TTC-TATTAACTGTCTCCTTCCTGTTTAACAAAGCTTGATATCTCGTCTGC--AATCTTA 840
                      **  **  *  *** * *****  * *      *       ***   * **   **   *

consensus_1630#0      ATGAAAGCA-- 909
consensus_1630#1      ATGGAGTTCTT 851
                      *** *      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)