Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1638 cluster # 1638       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1638#0 length = 1138 sequences # 2  

consensusID : consensus_1638#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1138
fasta sequence
                              [ACAAGGGAACCCTGAAAGATGGCACTCAAATTGCAATTAAAAAGCTGTCAGCTGAATCAAAGCAAGGGGCAAATGAGTTCTTGACCGAGATAAATGTCATATCCAATGTCAGGCACCCCAACCTTGTAAAGCTAATTGGTTGCTGTGTTGAAGGGACTAACAGACTACTAGTGTATGAATATGCAGAGAACAATAGCTTGGCACATGCTTTACTTGGACCAAGGAGTAGGTGTATTCCGTTAAACTGGCAAAAAAGAGCAGCTATTTGTATCGGAACTGCTTCTGGCCTTGCATTTCTTCATGAGGAAGCACAGCCACGCATTGTTCATCGTGATATCAAGGCCAGCAACATTTTACTTGATAAGAAACTACTTCCTAAAATTGGAGATTTTGGACTGGCCAAGCTTTTTCCTGACACCATTACTCACATTAGCACACGTGTTGCAGGAACAATGGGTTACTTAGCACCAGAGTATGCCTTGTTGGGACAGTTAACCAAGAAAGCAGATATATATAGTTTTGGGGTCCTTGTCCTTGAAGTGATAAGTGGTGAAAGCAGTAGCAAATCGACTTGGGGGCAAGATATGAATGTCCTTGTGGAATGGACATGGAAGCTTCGAGAACAAGGAAGGCTTTTGGAAATTGTTGATCCAGAACTGGAAGAATACCCAGAGGAGGAAATGCTTCGTTTCATCAAGGTGGCACTCGTGTGCACCCAGGCCACGTCCCAGCAGAGGCCATCCATGAAACAGGTGGTGGATATGCTATCTAACCCAACAGAAATCAGTCTGGAGAACTTAGTCGCACCCAGTGTGCTGAAAGAACCCCGCCATCATTCAATTAGTCCGGTTTGACACCGAACCCACGCTCCAACAGAAGCCCCGAACCCAATCCACCTGATTCCTACAGCACACCGACCAAGACTTAATTACCATCAGNTGAGCCCGATTGANGTTTCCCTAAGTAAATCCGANAACTTCGCCCCTTTTGCAAAATTACAGGGCCCCAAATTGTAGAATCGCGCNCCAANAAGTTACNTGAATAATAAATTAATGAACTCNNACNCCCANTCCGTCCTCGAACAAGACAAACATAATGACCTTNGGGTTGTNTCTNTTNNNNTGTTTTCTNTGGTCTC]

[+] EMBL CB661005             [ACAAGGGAACCCTGAAAGATGGCACTCAAATTGCAATTAAAAAGCTGTCAGCTGAATCAAAGCAAGGGGCAAATGAGTTCTTGACCGAGATAAATGTCATATCCAATGTCAGGCACCCCAACCTTGTAAAGCTAATTGGTTGCTGTGTTGAAGGGACTAACAGACTACTAGTGTATGAATATGCAGAGAACAATAGCTTGGCACATGCTTTACTTGGACCAAGGAGTAGGTGTATTCCGTTAAACTGGCAAAAAAGAGCAGCTATTTGTATCGGAACTGCTTCTGGCCTTGCATTTCTTCATGAGGAAGCACAGCCACGCATTGTTCATCGTGATATCAAGGCCAGCAACATTTTACTTGATAAGAAACTACTTCCTAAAATTGGAGATTTTGGACTGGCCAAGCTTTTTCCTGACACCATTACTCACATTAGCACACGTGTTGCAGGAACAATGGGTTACTTAGCACCAGAGTATGCCTTGTTGGGACAGTTAACCAAGAAAGCAGATATATATAGTTTTGGGGTCCTTGTCCTTGAAGTGATAAGTGGTGAAAGCAGTAGCAAATCGACTTGGGGGCAAGATATGAATGTCCTTGTGGAATGGACATGGAAGCTTCGAGAACAAGGAAGGCTTTTGGAAATTGTTGATCCAGAACTGGAAGAATACCCAGAGGAGGAAATGCTTCGTTTCATCAAGGTGGCACTCGTGTGCACCCAGGCCACGTCCCAGCAGAGGCCATCCATGAAACAGGTGGTGGATATGCT                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CA753348             [                                                                                                                                                                                                                                                                                                                                   GTTCATCGTGATATCAAGGCCAGCAACATTTTACTTGATAAGAAACTACTTCCTAAAATTGGAGATTTTGGACTGGCCAAGCTTTTTCCTGACACCATTACTCACATTAGCACACGTGTTGCAGGAACAATGGGTTACTTAGCACCAGAGTATGCCTTGTTGGGACAGTTAACCAAGAAAGCAGATATATATAGTTTTGGGGTCCTTGTCCTTGAAGTGATAAGTGGTGAAAGCAGTAGCAAATCCACTTGGGGGCAAGATATGAATGTCCTTGTGGAATGGACATGGAAGCTTCGAGAACAAGGAAGGCTTTTGGAAATGGTTGATCCAGAACTGGAAGAATACCCAGAGGAGGAAATGCTTCGTTTCATCAAGGTGGCACTCGTGTGCACCCAGGCCACGTCCCAGCAGAGGCCATCCATGAAACGGGTGGTGGATATGCCATCTAACCCAACAGAAATCAGTCTGGAGAACTTAGTCGCACCCAGTGTGCTGAAAGAACCCCGCCATCATTCAATTAGTCCGGTTTGACACCGAACCCACGCTCCAACAGAAGCCCCGAACCCAATCCACCTGATTCCTACAGCACACCGACCAAGACTTAATTACCATCAGNTGAGCCCGATTGANGTTTCCCTAAGTAAATCCGANAACTTCGCCCCTTTTGCAAAATTACAGGGCCCCAAATTGTAGAATCGCGCNCCAANAAGTTACNTGAATAATAAATTAATGAACTCNNACNCCCANTCCGTCCTCGAACAAGACAAACATAATGACCTTNGGGTTGTNTCTNTTNNNNTGTTTTCTNTGGTCTC]


>consensus_1638#0 ACAAGGGAACCCTGAAAGATGGCACTCAAATTGCAATTAAAAAGCTGTCAGCTGAATCAA AGCAAGGGGCAAATGAGTTCTTGACCGAGATAAATGTCATATCCAATGTCAGGCACCCCA ACCTTGTAAAGCTAATTGGTTGCTGTGTTGAAGGGACTAACAGACTACTAGTGTATGAAT ATGCAGAGAACAATAGCTTGGCACATGCTTTACTTGGACCAAGGAGTAGGTGTATTCCGT TAAACTGGCAAAAAAGAGCAGCTATTTGTATCGGAACTGCTTCTGGCCTTGCATTTCTTC ATGAGGAAGCACAGCCACGCATTGTTCATCGTGATATCAAGGCCAGCAACATTTTACTTG ATAAGAAACTACTTCCTAAAATTGGAGATTTTGGACTGGCCAAGCTTTTTCCTGACACCA TTACTCACATTAGCACACGTGTTGCAGGAACAATGGGTTACTTAGCACCAGAGTATGCCT TGTTGGGACAGTTAACCAAGAAAGCAGATATATATAGTTTTGGGGTCCTTGTCCTTGAAG TGATAAGTGGTGAAAGCAGTAGCAAATCGACTTGGGGGCAAGATATGAATGTCCTTGTGG AATGGACATGGAAGCTTCGAGAACAAGGAAGGCTTTTGGAAATTGTTGATCCAGAACTGG AAGAATACCCAGAGGAGGAAATGCTTCGTTTCATCAAGGTGGCACTCGTGTGCACCCAGG CCACGTCCCAGCAGAGGCCATCCATGAAACAGGTGGTGGATATGCTATCTAACCCAACAG AAATCAGTCTGGAGAACTTAGTCGCACCCAGTGTGCTGAAAGAACCCCGCCATCATTCAA TTAGTCCGGTTTGACACCGAACCCACGCTCCAACAGAAGCCCCGAACCCAATCCACCTGA TTCCTACAGCACACCGACCAAGACTTAATTACCATCAGNTGAGCCCGATTGANGTTTCCC TAAGTAAATCCGANAACTTCGCCCCTTTTGCAAAATTACAGGGCCCCAAATTGTAGAATC GCGCNCCAANAAGTTACNTGAATAATAAATTAATGAACTCNNACNCCCANTCCGTCCTCG AACAAGACAAACATAATGACCTTNGGGTTGTNTCTNTTNNNNTGTTTTCTNTGGTCTC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)