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Oryza sativa
cluster # 16390 cluster # 16390       Sequences # 32       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_16390#0 length = 642 sequences # 9  
consensus_16390#1 length = 639 sequences # 20  
consensus_16390#2 length = 324 sequences # 1  
consensus_16390#3 length = 244 sequences # 1  
consensus_16390#4 length = 157 sequences # 1  

consensusID : consensus_16390#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 642
fasta sequence
                              [CTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGGCGGCTGCGCCGGGGGCGGAGGCGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGCCGT-CGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC-CTGCCACGTCCCCGTCCC-CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC-TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTG---T-A--TTGG-------TGTATGTA----TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAAAAAAAAAAAAAAAAAAAATATATAATAATTTATAACCCTA]

[+] EMBL BE040812             [CTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCTGCGCCGGGGGCGGAGGCGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGCCGT CGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCACGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTAGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGGATTGAGTTTGGA      TGTATGTA    TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAAAAAAAAAAAAAAAAA                         ]
[+] EMBL OSR11901A            [   TACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGANGGTGGNGTTGGNGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSR11921A            [   TACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL OSR11841A            [   TACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGNGGCGTTGGCGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGng                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BE040980             [                                        TTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGCCGT CGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCCCGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTG   T A  TTGGGTTTGGATGTATGTA    TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGGTTAAAAAAAAACAATTTATATAATAATTTATAACCCTA]
[+] EMBL AU031466             [                                                                                                                                                                                CTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTTCCCGTCCGGCGTCNTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCCCGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTG   T A  TTGG        GTATGTA    TGTATGTATGAATAAATAAAGCCAGAAATGCNGTTGTNCGAAAAAAAAAAAAAAAAAAAAaa                    ]
[+] EMBL BE040224             [                                                                                                                                                                                                                                                 TGAAGAAGCAGCAGCCGTGCCTGTGCCANTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCCCGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGGGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCGATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGGTATACTGCTCTG   T A  TTGGGTT    TGTATGTATGAGTGTATGTATGAATAAATAAGGCCAGAAATGCAGTTGTACGAGGTTAAAAAAAAAAAAAAA                      ]
[+] EMBL AU162152             [                                                                                                                                                                                                                                                                                                                           GGCAAGAAGGTCTTGGCCGCNCTGCCAAGTCCCCGTCCCANTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTG   T A  TTGG        GTATGTA    TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAAAA                                      ]
[+] EMBL AU164766             [                                                                                                                                                                                                                                                                                                                                                                                               CAGTTCTGTGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGNATGGCCCACCTTGNCATAGACGCCGTCTATATATNGACGTACGTACGTGTCTCGCTTACTTGATTNCGTGTCTGCTTCGNCGAGTTNGATNGTGCCGTGTATTGCGTACGGTTATCCTGCTCTG   T A  TTGG        GTATGTA    TGTATGTATGAATAAATAAAGCCAGAAATGCNGTTGTNCGAAAAAAAANNAAAAAA                          ]


>consensus_16390#0 CTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAAT TTCGATCGCGAAGGGNCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGNGGTGCTGC TGCTGCTCGCGGCGGCGGCTGCGCCGGGGGCGGAGGCGGCGTGCGACGCGCTGCAGCTGT CGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGCCGTCGGCGTCGTGCTGCAGCCGGA TGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACG TCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCT AAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGT CGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTA CTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACT GCTCTGTATTGGTGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACG AAAAAAAAAAAAAAAAAAAATATATAATAATTTATAACCCTA



consensusID : consensus_16390#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 20
consensus length = 639
fasta sequence
                              [GGGAATAGCTGCGGCTGTACAATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG-TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC-GTTGGC-GGTGGC-GGCGATGGC-GGTG-CTGCTGCTGCTCGCGGCGGC-GGCGGCGCC-GGGGGCGGA-GGCGGCGTGCGAC-GCGCTGCAGCTG-TCG-CCGTGCGC-GAGCGCGATCATCG-GG-AACGCGTCGCC-GTCGGCGTCG-TGCTGCAGC-CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG-CGACCCAAACCTGCAGCGC-TACGTCAA-CTCCCCCAACGG-CAAGAAGGT-CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTATTTTTAAAAA]

[+] EMBL CB964855             [GGGAATAGCTGCGGCTGTACAATCCTATACAAAGCAAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTGCCTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAACTAACGCCAGAAAT                           ]
[+] EMBL AK062463             [            tagctagCAATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTT                     ]
[+] EMBL AU183921             [                    AATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCC                                                                                                                                                                                                      ]
[+] EMBL CB966380             [                      TCCTATACAAAGCAAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAAT                           ]
[+] EMBL AU164855             [                      TCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCN GGNGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGNTTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCNCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCG                                                                                       ]
[+] EMBL AU183882             [                       CCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCAGTTGGCAGGTGGCAGGCGATGGCAGGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGG                                                                                                                                                                                            ]
[+] EMBL CB965134             [                          ATACAAAGCAAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCCGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAAT                           ]
[+] EMBL CA754776             [                            ACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGA                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BU673113             [                                   cAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGCGGGCGGCGCCGGGGGGCGGAGGGCGGCGTGCGACAGCGCTGCAGCTGATCGACCGTGCGCAGAGCGCGATCATCG GGAAACGCGTCGCCTGTCGGCGTCGATGCTGCAGCGCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGNCGACCC                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU198241             [                                             AATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCT                                                                                                                                         ]
[-] EMBL CB966353             [                                                   TGGTTCCTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGCC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGCCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTATGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGC                         ]
[-] EMBL CB967058             [                                                     GTTCTTGATCATTGTTATCTAAGTTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGCC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG                    ]
[+] EMBL AU101556             [                                                                   TTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCN GGAGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGG NTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCANTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CA                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB966148             [                                                                                              GAAGGGCCATGGCGAAGGTGGC GTTGTC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAAT AAGCCAGAAA                            ]
[-] EMBL BU673587             [                                                                                              GAAGGTCCATGGCGAAGGTGGC GTTGTC GGTGGC GGCGATGTC GGTG CTGCTGCTGCTCGCGTCGTC GGCGGCGCC GGGGGCGGA GTCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGT TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAA                            ]
[+] EMBL AU101557             [                                                                                                                                                                                                       C GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTTCCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTATTTTTAAAAA]
[-] EMBL CB965424             [                                                                                                                                                                                                         GCGCTGCAGCTG TCT CCGTGCTC GAGCGCGTTCTTCGTGG TACGCCTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGATCTTCATCCGTGCCTGTGCCAGTACGCGCT CGACCCATACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG                    ]
[-] EMBL CB967002             [                                                                                                                                                                                                         GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCACCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG                    ]
[+] EMBL AU162073             [                                                                                                                                                                                                                                                                                                                                                CGCTTACGTCAANCTCCCCCAACGGNCAAGAAGGTCCNTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTAaaa       ]
[-] EMBL BU673504             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG                    ]


>consensus_16390#1 GGGAATAGCTGCGGCTGTACAATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTG ATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCGTTGG CGGTGGCGGCGATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGG CGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGC CGTCGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGC GCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCT GCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGT TTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATAT GGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTG CCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAAT AAAGCCAGAAATGCAGTTGTACGAGGTTATTTTTAAAAA



consensusID : consensus_16390#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 324
fasta sequence
                              [AGCAATAACTGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGCCATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCNACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTNAGTNCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTTTCTCGCTTACTTGAT]

[+] EMBL OSS15842A            [AGCAATAACTGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGCCATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCNACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTNAGTNCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTTTCTCGCTTACTTGAT]


>consensus_16390#2 AGCAATAACTGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGCCA TGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCNACC CAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCTGCCACG TCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATAC GTGTGTNAGTNCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGT ACGTACGTTTCTCGCTTACTTGAT



consensusID : consensus_16390#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence
                              [ANCCAAACCATAATACTCCAGTTNTGCGTGCCGTTTATACGTGTGTGAGTGCNCCTNTCNNATGGCCCACCTGCCATAGACGCCGTNTATATATGGACGTACNTACGTGTCTCGCTTACTTGATTTCGTGTCTGTTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCNNGNNATAAAAAAAAAAAAAAAAAA]

[+] EMBL AU091439             [ANCCAAACCATAATACTCCAGTTNTGCGTGCCGTTTATACGTGTGTGAGTGCNCCTNTCNNATGGCCCACCTGCCATAGACGCCGTNTATATATGGACGTACNTACGTGTCTCGCTTACTTGATTTCGTGTCTGTTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCNNGNNATAAAAAAAAAAAAAAAAAA]


>consensus_16390#3 ANCCAAACCATAATACTCCAGTTNTGCGTGCCGTTTATACGTGTGTGAGTGCNCCTNTCN NATGGCCCACCTGCCATAGACGCCGTNTATATATGGACGTACNTACGTGTCTCGCTTACT TGATTTCGTGTCTGTTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGC TCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCNNGNNATAAAAAAAAAAAAAA AAAA



consensusID : consensus_16390#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 157
fasta sequence
                              [TAGGACAGTACGTAGCGTGTCTACGCTTACTTGACGTTCGTGTCTGCGTTCGACGAGTTCGAGACGTGCCGTGTATTGCGTACCGGTTATACTGCTCTGTACTTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATCCAGTTGTACGAGGT]

[-] EMBL CB964911             [TAGGACAGTACGTAGCGTGTCTACGCTTACTTGACGTTCGTGTCTGCGTTCGACGAGTTCGAGACGTGCCGTGTATTGCGTACCGGTTATACTGCTCTGTACTTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATCCAGTTGTACGAGGT]


>consensus_16390#4 TAGGACAGTACGTAGCGTGTCTACGCTTACTTGACGTTCGTGTCTGCGTTCGACGAGTTC GAGACGTGCCGTGTATTGCGTACCGGTTATACTGCTCTGTACTTGGGTATGTATGTATGT ATGAATAAATAAAGCCAGAAATCCAGTTGTACGAGGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_16390#3      ------------------------------------------------------------
consensus_16390#4      ------------------------------------------------------------
consensus_16390#0      ------------------------CTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTG 36
consensus_16390#1      GGGAATAGCTGCGGCTGTACAATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTG 60
consensus_16390#2      ------------------------------------------------------------
                                                                                   

consensus_16390#3      ------------------------------------------------------------
consensus_16390#4      ------------------------------------------------------------
consensus_16390#0      ATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGTGGCGTTGG 96
consensus_16390#1      ATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCGTTGG 120
consensus_16390#2      ------------------------------------------------------------
                                                                                   

consensus_16390#3      ------------------------------------------------------------
consensus_16390#4      ------------------------------------------------------------
consensus_16390#0      CGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGGCGGCTGCGCCGGGGGCGGAGG 156
consensus_16390#1      CGGTGGCGGCGATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGG 180
consensus_16390#2      ------------------------------------------------------------
                                                                                   

consensus_16390#3      ------------------------------------------------------------
consensus_16390#4      ------------------------------------------------------------
consensus_16390#0      CGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGC 216
consensus_16390#1      CGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGC 240
consensus_16390#2      ------------------------------------------------------------
                                                                                   

consensus_16390#3      ------------------------------------------------------------
consensus_16390#4      ------------------------------------------------------------
consensus_16390#0      CGTCGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGC 276
consensus_16390#1      CGTCGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGC 300
consensus_16390#2      ------------------------------------------------------------
                                                                                   

consensus_16390#3      ------------------------------------------------------------
consensus_16390#4      ------------------------------------------------------------
consensus_16390#0      GCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCT 336
consensus_16390#1      GCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCT 360
consensus_16390#2      ---------------------------------------------------AGCAATAAC 9
                                                                                   

consensus_16390#3      --------------------------ANCCAAACCATAATACTCCAGTTNTGCGTGCCGT 34
consensus_16390#4      ------------------------------------------------------------
consensus_16390#0      GCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGT 396
consensus_16390#1      GCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGT 420
consensus_16390#2      TGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGCCATGGCGGTGC 69
                                                                                   

consensus_16390#3      TTATACGTGTGTGAGTGCNCCTNTCNNATGGCCCACCTGCCATAGACGCCGTNTATATAT 94
consensus_16390#4      ---------------------------------------------------------TAG 3
consensus_16390#0      TTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATAT 456
consensus_16390#1      TTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATAT 480
consensus_16390#2      TGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCNACCCAAACCTGC 129
                                                                                *  

consensus_16390#3      GGACGTACNTA-CGTGTCT-CGCTTACTTGAT-TTCGTGTCTGT-TTCGACGAGTTCGAT 150
consensus_16390#4      GACAGTACGTAGCGTGTCTACGCTTACTTGACGTTCGTGTCTGCGTTCGACGAGTTCGAG 63
consensus_16390#0      GGACGTACGTA-CGTGTCT-CGCTTACTTGAT-TTCGTGTCTGC-TTCGACGAGTTCGAT 512
consensus_16390#1      GGACGTACGTA-CGTGTCT-CGCTTACTTGAT-TTCGTGTCTGC-TTCGACGAGTTCGAT 536
consensus_16390#2      AGCGCTACGTCAACTCCCC-CAACGGCAAGAAGGTCTTGGCCGCCTGCCACGTCCCCGTC 188
                            *** *    *  *  *     *  **   ** ** * *  * * ***    **  

consensus_16390#3      -CGTGCCGTGTATTGCGTAC-GGTTATCCTGCTCTGTA-TTGGGTATGTATGTATGTATG 207
consensus_16390#4      ACGTGCCGTGTATTGCGTACCGGTTATACTGCTCTGTACTTGGGTATGTATGTATGTATG 123
consensus_16390#0      -CGTGCCGTGTATTGCGTAC-GGTTATACTGCTCTGTATTGGTGTATGTATGTATGTATG 570
consensus_16390#1      -CGTGCCGTGTATTGCGTAC-GGTTATACTGCTCTGTA-TTGGGTATGTATGTATGTATG 593
consensus_16390#2      CCCTCCTGCTAAAACCAAAC-CATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTN 247
                        * * * *   *   *  **   * ** ** *  *           * ***   *** * 

consensus_16390#3      AATAAATAAAGCNNGNNATAAAAAAAAAAAAAAAAAA----------------------- 244
consensus_16390#4      AATAAATAAAGCCAGAAATCCAGTTGTACGAGGT-------------------------- 157
consensus_16390#0      AATAAATAAAGCCAGAAATGCAGTTGTACGAAAAAAAAAAAAAAAAAAAATATATAATAA 630
consensus_16390#1      AATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTATTTTTAAAAA-------------- 639
consensus_16390#2      AGTNCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACG 307
                       * *        *         *        *                             

consensus_16390#3      -----------------
consensus_16390#4      -----------------
consensus_16390#0      TTTATAACCCTA----- 642
consensus_16390#1      -----------------
consensus_16390#2      TTTCTCGCTTACTTGAT 324
                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)