These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 642 fasta sequence [CTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGGCGGCTGCGCCGGGGGCGGAGGCGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGCCGT-CGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC-CTGCCACGTCCCCGTCCC-CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC-TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTG---T-A--TTGG-------TGTATGTA----TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAAAAAAAAAAAAAAAAAAAATATATAATAATTTATAACCCTA] [+] EMBL BE040812 [CTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCTGCGCCGGGGGCGGAGGCGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGCCGT CGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCACGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTAGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGGATTGAGTTTGGA TGTATGTA TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAAAAAAAAAAAAAAAAA ] [+] EMBL OSR11901A [ TACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGANGGTGGNGTTGGNGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGG ] [+] EMBL OSR11921A [ TACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGG ] [+] EMBL OSR11841A [ TACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGNGGCGTTGGCGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGng ] [+] EMBL BE040980 [ TTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCGTTGGCGGTGGCGGCGATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGCCGT CGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCCCGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTG T A TTGGGTTTGGATGTATGTA TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGGTTAAAAAAAAACAATTTATATAATAATTTATAACCCTA] [+] EMBL AU031466 [ CTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTTCCCGTCCGGCGTCNTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCCCGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTG T A TTGG GTATGTA TGTATGTATGAATAAATAAAGCCAGAAATGCNGTTGTNCGAAAAAAAAAAAAAAAAAAAAaa ] [+] EMBL BE040224 [ TGAAGAAGCAGCAGCCGTGCCTGTGCCANTACGCGCGCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGC CTGCCACGTCCCCGTCCC CTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGGGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCGATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGGTATACTGCTCTG T A TTGGGTT TGTATGTATGAGTGTATGTATGAATAAATAAGGCCAGAAATGCAGTTGTACGAGGTTAAAAAAAAAAAAAAA ] [+] EMBL AU162152 [ GGCAAGAAGGTCTTGGCCGCNCTGCCAAGTCCCCGTCCCANTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACC TGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTG T A TTGG GTATGTA TGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAAAA ] [+] EMBL AU164766 [ CAGTTCTGTGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGNATGGCCCACCTTGNCATAGACGCCGTCTATATATNGACGTACGTACGTGTCTCGCTTACTTGATTNCGTGTCTGCTTCGNCGAGTTNGATNGTGCCGTGTATTGCGTACGGTTATCCTGCTCTG T A TTGG GTATGTA TGTATGTATGAATAAATAAAGCCAGAAATGCNGTTGTNCGAAAAAAAANNAAAAAA ] consensusID : consensus_16390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 639 fasta sequence [GGGAATAGCTGCGGCTGTACAATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG-TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC-GTTGGC-GGTGGC-GGCGATGGC-GGTG-CTGCTGCTGCTCGCGGCGGC-GGCGGCGCC-GGGGGCGGA-GGCGGCGTGCGAC-GCGCTGCAGCTG-TCG-CCGTGCGC-GAGCGCGATCATCG-GG-AACGCGTCGCC-GTCGGCGTCG-TGCTGCAGC-CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG-CGACCCAAACCTGCAGCGC-TACGTCAA-CTCCCCCAACGG-CAAGAAGGT-CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTATTTTTAAAAA] [+] EMBL CB964855 [GGGAATAGCTGCGGCTGTACAATCCTATACAAAGCAAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTGCCTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAACTAACGCCAGAAAT ] [+] EMBL AK062463 [ tagctagCAATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTT ] [+] EMBL AU183921 [ AATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCC ] [+] EMBL CB966380 [ TCCTATACAAAGCAAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAAT ] [+] EMBL AU164855 [ TCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCN GGNGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGNTTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCNCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCG ] [+] EMBL AU183882 [ CCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCAGTTGGCAGGTGGCAGGCGATGGCAGGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGG ] [+] EMBL CB965134 [ ATACAAAGCAAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCCGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAAT ] [+] EMBL CA754776 [ ACAAAGCAAGTAGTAGCAATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGA ] [+] EMBL BU673113 [ cAGTAGTAGC ATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGCGGGCGGCGCCGGGGGGCGGAGGGCGGCGTGCGACAGCGCTGCAGCTGATCGACCGTGCGCAGAGCGCGATCATCG GGAAACGCGTCGCCTGTCGGCGTCGATGCTGCAGCGCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCGNCGACCC ] [+] EMBL AU198241 [ AATAACTGGTTCTTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCT ] [-] EMBL CB966353 [ TGGTTCCTGATCATTTTTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGCC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGCCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTATGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGC ] [-] EMBL CB967058 [ GTTCTTGATCATTGTTATCTAAGTTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGCC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG ] [+] EMBL AU101556 [ TTATCTAAG TTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGC GTTGGC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCN GGAGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGG NTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCANTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CA ] [-] EMBL CB966148 [ GAAGGGCCATGGCGAAGGTGGC GTTGTC GGTGGC GGCGATGGC GGTG CTGCTGCTGCTCGCGGCGGC GGCGGCGCC GGGGGCGGA GGCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAAT AAGCCAGAAA ] [-] EMBL BU673587 [ GAAGGTCCATGGCGAAGGTGGC GTTGTC GGTGGC GGCGATGTC GGTG CTGCTGCTGCTCGCGTCGTC GGCGGCGCC GGGGGCGGA GTCGGCGTGCGAC GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGT TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAA ] [+] EMBL AU101557 [ C GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTTCCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTATTTTTAAAAA] [-] EMBL CB965424 [ GCGCTGCAGCTG TCT CCGTGCTC GAGCGCGTTCTTCGTGG TACGCCTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGATCTTCATCCGTGCCTGTGCCAGTACGCGCT CGACCCATACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG ] [-] EMBL CB967002 [ GCGCTGCAGCTG TCG CCGTGCGC GAGCGCGATCATCG GG AACGCGTCGCC GTCGGCGTCG TGCTGCAGC CGGATGAAGGAGCAGCACCCGTGCCTGTGCCAGTACGCGCG CGACCCAAACCTGCAGCGC TACGTCAA CTCCCCCAACGG CAAGAAGGT CTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG ] [+] EMBL AU162073 [ CGCTTACGTCAANCTCCCCCAACGGNCAAGAAGGTCCNTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTGTCTCGCTTACTTGATTTCGTGTCTGCTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTAaaa ] [-] EMBL BU673504 [ CGTGCCGTGTATTGCGTACGGTTATACTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATGCAGTTG ] consensusID : consensus_16390#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [AGCAATAACTGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGCCATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCNACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTNAGTNCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTTTCTCGCTTACTTGAT] [+] EMBL OSS15842A [AGCAATAACTGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGCCATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCNACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCTGCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTNAGTNCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACGTTTCTCGCTTACTTGAT] consensusID : consensus_16390#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 244 fasta sequence [ANCCAAACCATAATACTCCAGTTNTGCGTGCCGTTTATACGTGTGTGAGTGCNCCTNTCNNATGGCCCACCTGCCATAGACGCCGTNTATATATGGACGTACNTACGTGTCTCGCTTACTTGATTTCGTGTCTGTTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCNNGNNATAAAAAAAAAAAAAAAAAA] [+] EMBL AU091439 [ANCCAAACCATAATACTCCAGTTNTGCGTGCCGTTTATACGTGTGTGAGTGCNCCTNTCNNATGGCCCACCTGCCATAGACGCCGTNTATATATGGACGTACNTACGTGTCTCGCTTACTTGATTTCGTGTCTGTTTCGACGAGTTCGATCGTGCCGTGTATTGCGTACGGTTATCCTGCTCTGTATTGGGTATGTATGTATGTATGAATAAATAAAGCNNGNNATAAAAAAAAAAAAAAAAAA] consensusID : consensus_16390#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence [TAGGACAGTACGTAGCGTGTCTACGCTTACTTGACGTTCGTGTCTGCGTTCGACGAGTTCGAGACGTGCCGTGTATTGCGTACCGGTTATACTGCTCTGTACTTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATCCAGTTGTACGAGGT] [-] EMBL CB964911 [TAGGACAGTACGTAGCGTGTCTACGCTTACTTGACGTTCGTGTCTGCGTTCGACGAGTTCGAGACGTGCCGTGTATTGCGTACCGGTTATACTGCTCTGTACTTGGGTATGTATGTATGTATGAATAAATAAAGCCAGAAATCCAGTTGTACGAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16390#3 ------------------------------------------------------------ consensus_16390#4 ------------------------------------------------------------ consensus_16390#0 ------------------------CTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTG 36 consensus_16390#1 GGGAATAGCTGCGGCTGTACAATCCTATACAAAGCAAGTAGTAGCAATAACTGGTTCTTG 60 consensus_16390#2 ------------------------------------------------------------ consensus_16390#3 ------------------------------------------------------------ consensus_16390#4 ------------------------------------------------------------ consensus_16390#0 ATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGNCATGGCGAAGGTGGCGTTGG 96 consensus_16390#1 ATCATTTTTATCTAAGTTCTTAATTTCGATCGCGAAGGGCCATGGCGAAGGTGGCGTTGG 120 consensus_16390#2 ------------------------------------------------------------ consensus_16390#3 ------------------------------------------------------------ consensus_16390#4 ------------------------------------------------------------ consensus_16390#0 CGGTGGCGGCGATGGNGGTGCTGCTGCTGCTCGCGGCGGCGGCTGCGCCGGGGGCGGAGG 156 consensus_16390#1 CGGTGGCGGCGATGGCGGTGCTGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGG 180 consensus_16390#2 ------------------------------------------------------------ consensus_16390#3 ------------------------------------------------------------ consensus_16390#4 ------------------------------------------------------------ consensus_16390#0 CGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGC 216 consensus_16390#1 CGGCGTGCGACGCGCTGCAGCTGTCGCCGTGCGCGAGCGCGATCATCGGGAACGCGTCGC 240 consensus_16390#2 ------------------------------------------------------------ consensus_16390#3 ------------------------------------------------------------ consensus_16390#4 ------------------------------------------------------------ consensus_16390#0 CGTCGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGC 276 consensus_16390#1 CGTCGGCGTCGTGCTGCAGCCGGATGAAGGAGCAGCAGCCGTGCCTGTGCCAGTACGCGC 300 consensus_16390#2 ------------------------------------------------------------ consensus_16390#3 ------------------------------------------------------------ consensus_16390#4 ------------------------------------------------------------ consensus_16390#0 GCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCT 336 consensus_16390#1 GCGACCCAAACCTGCAGCGCTACGTCAACTCCCCCAACGGCAAGAAGGTCTTGGCCGCCT 360 consensus_16390#2 ---------------------------------------------------AGCAATAAC 9 consensus_16390#3 --------------------------ANCCAAACCATAATACTCCAGTTNTGCGTGCCGT 34 consensus_16390#4 ------------------------------------------------------------ consensus_16390#0 GCCACGTCCCCGTCCCCTCCTGCTAAAACCAAACCATAATACTCCAGTTCTGCGTGCCGT 396 consensus_16390#1 GCCACGTCCCCGTCCCCTCCTGCTAAAACTAAACCATAATACTCCAGTTCTGCGTGCCGT 420 consensus_16390#2 TGGTTCTTGATCATTTTTATCTAAGTNCTTAATTTCGATCGCGAAGGGCCATGGCGGTGC 69 consensus_16390#3 TTATACGTGTGTGAGTGCNCCTNTCNNATGGCCCACCTGCCATAGACGCCGTNTATATAT 94 consensus_16390#4 ---------------------------------------------------------TAG 3 consensus_16390#0 TTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATAT 456 consensus_16390#1 TTATACGTGTGTGAGTGCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATAT 480 consensus_16390#2 TGCTGCTGCTCGCGGCGGCGGCGGCGCCGGGGGCGGAGGCGGCGTGCNACCCAAACCTGC 129 * consensus_16390#3 GGACGTACNTA-CGTGTCT-CGCTTACTTGAT-TTCGTGTCTGT-TTCGACGAGTTCGAT 150 consensus_16390#4 GACAGTACGTAGCGTGTCTACGCTTACTTGACGTTCGTGTCTGCGTTCGACGAGTTCGAG 63 consensus_16390#0 GGACGTACGTA-CGTGTCT-CGCTTACTTGAT-TTCGTGTCTGC-TTCGACGAGTTCGAT 512 consensus_16390#1 GGACGTACGTA-CGTGTCT-CGCTTACTTGAT-TTCGTGTCTGC-TTCGACGAGTTCGAT 536 consensus_16390#2 AGCGCTACGTCAACTCCCC-CAACGGCAAGAAGGTCTTGGCCGCCTGCCACGTCCCCGTC 188 *** * * * * * ** ** ** * * * * *** ** consensus_16390#3 -CGTGCCGTGTATTGCGTAC-GGTTATCCTGCTCTGTA-TTGGGTATGTATGTATGTATG 207 consensus_16390#4 ACGTGCCGTGTATTGCGTACCGGTTATACTGCTCTGTACTTGGGTATGTATGTATGTATG 123 consensus_16390#0 -CGTGCCGTGTATTGCGTAC-GGTTATACTGCTCTGTATTGGTGTATGTATGTATGTATG 570 consensus_16390#1 -CGTGCCGTGTATTGCGTAC-GGTTATACTGCTCTGTA-TTGGGTATGTATGTATGTATG 593 consensus_16390#2 CCCTCCTGCTAAAACCAAAC-CATAATACTCCAGTTCTGCGTGCCGTTTATACGTGTGTN 247 * * * * * * ** * ** ** * * * *** *** * consensus_16390#3 AATAAATAAAGCNNGNNATAAAAAAAAAAAAAAAAAA----------------------- 244 consensus_16390#4 AATAAATAAAGCCAGAAATCCAGTTGTACGAGGT-------------------------- 157 consensus_16390#0 AATAAATAAAGCCAGAAATGCAGTTGTACGAAAAAAAAAAAAAAAAAAAATATATAATAA 630 consensus_16390#1 AATAAATAAAGCCAGAAATGCAGTTGTACGAGGTTATTTTTAAAAA-------------- 639 consensus_16390#2 AGTNCGCCTGTCGCATGGCCCACCTGCCATAGACGCCGTCTATATATGGACGTACGTACG 307 * * * * * consensus_16390#3 ----------------- consensus_16390#4 ----------------- consensus_16390#0 TTTATAACCCTA----- 642 consensus_16390#1 ----------------- consensus_16390#2 TTTCTCGCTTACTTGAT 324 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||