These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2457 fasta sequence [GAACAGGCGGCGATCTCGTCCGGTGGTACCTACTCCGATGGCTCGCGTCCGCCACCGCCATCTCCTCTTGCTCGTCGCCGCCGTCGCCGCCGCCGCCTCCGCGCTCCTCCCGTGCGCCTCCGCGGTCCGCCCGTTCGTGCTCGTCCTCTCCCGTGACGACTTCCTCAAGGACACCGCCGGCGCGCATCCCTCCCTCCCATCAGCCGACGCCGACTCCGACGAGTGGGACGACTTCGACGACGAGTCCCCCGCCACCGACCCCCTCCTCTCCCCGTCCTCCTGGGTCCCCCTCCTCGACCCCGCCAGCGCCTCCCCTTCGGGCGACGAGCCGGACTCGCCGTCCGATGCGCTCTTCGTCGCTGGCGTGCGGGCGATGCTCTCCGCGGCCTCGGCGGGGGATGACGCGGCGTTCGCCACCGCAGCGGCGCAGATCGAGGCCGCAGCTACGGGGGGGCACCCCGGCGCGCAGTCCGCTCTCGCGTTCCTCTCCGGCGCAGGGATGACGCGCCCGGCGTCCCGCTCGCGCGCCTTCCTGCTTCACAAATTCGCCGCCGACGCAGGAGACCTCCAGTCTAAGATGGCTCTCGCCTACTCCTTCTTCCGCCAGGAGATGTATGAAGAAGCAGTCACACTTTATGCTGAACTTGCAGAGGCTGCGCTTACAAGCTCCTTGATCTCGAAGGAGCCTCCAGTGATTGAACCAGTCAGGTTACACAGTGGGACCGAAGAAAACAAGGAAGCCTTGAGGAAGTCTCGAGGCGAGGATGATGAAGATTTTCAAATCACAGAGTACCAGGCACAACGAGGCAATACTGTTGCAATGCACAAATTAGGGCTTCTGTATTACTATGGCCTACGAGGAGTTAGACGTGATTATGGGAAAGCATATCATTGGTTTTCAAAGGCTGTGGAGAAAGGCGATACACGGGCAATGGAGCTTCTCGGAGAGATCTATGCTAGAGGTGCTGGAGTTGAAAGGAACTACACTGAAGCATACAAGTGGTTGACACTTGCAGCAAAGCAGCAACAATACTCAGCTTACAATGGACTGGGTTATCTCTATGTCAAAGGTTATGGGGTTGAGAAGAAAAACTTGACAAAAGCAAAGGAATTTTTTGAAATTGCAGCTGAGCATAAGGAACATGGGGGTTATTATAACCTTGGCGTCTTGTATCTCAAGGGTATTGGAGTAAAGAGGGATGTGATGACAGCATGCAATTTCTTTCTTCGAGCAGTTAATGCTGGGCAACCAAAAGCTATTTATCAAGTGGCAAAGTTGTTCCAGAAAGGTGTTGGTCTTAAGAGGAATCTCCAAATGGCGGCAGTGATGTACAAATCTGTTGCTGAGAGGGGCCCCTGGAGCTCACTTTCTAGATGGGCTCTGGAATCTTATTTGAAAGGTGACATAGGGAAAGCATTACTCCTGTATTCTAGAATGGCGGATCTTGGATATGAGGTTGCACAAAGCAATGCTGCCTGGATTCTTGATAGGTATGGCGATGAAAGTATTTGCATGGGAGAATCTGGCTTCTGTACAGATATGGAAAGACATCTCCGTGCACATGCTCTGTGGTGGCAAGCATCCGAGCAGGGTAACGAACATGCTGCCTTGTTAATTGGTGACGCCTACTACTATGGCCGGGGTGTTGGCAGGGATTACGAGCGTGCAGCCGAGGCATATATGCATGCGCAATCACAATCTAATGCTCAGGCCATGTTTAACCTTGGTTATATGCATGAGCATGGCCATGGACTTCCCCTTGACTTGCACCTGGCAAAAAGATATTATGATCAGGCTGTTGAGGTGGATCCAGCAGCTAAGCTCCCTGTCATGCTTGCACTAACAAGTTTATGGATAAGGAAGAACTATGATGGAAGCTTTTTGGTTCATTTTATTGATTCACTGCCGGAGGTATATCCTGTAGTTGAGGAATGGGTGGAGGATGTTCTTATGGATGAGGGGAACGCAACAATATTTACTCTCTTCGCTTGCCTTGTAACTGTCCTATATTTGCGAGAGCGTCAGAGGCGTCAAGCTGCGGCCGCCAACCCTCAACAGCCTGATGGTGCACCCATCTAATTTCAACCTTTGCATCATGATGCTGGGATTGAAGTGGACGTTAAGCTTGAGGTACATAGTCATTTATTCTCAGCCATATCATACCATCAAAGTTTTGTTTGATGTCTGAAGTGTTAATGGAATGACAACGTCCATACTGTCATACTGGAAAAGCGGGTCCTTCAACTGCAAAATGCTGATGGCTTTCTGAGGTTAAAAATCGGGGTTTAAAATGATAGCTCTCCTTGACATCTATGTACACTAAAATTGACTAGGATAAGAACTGATCATGACTGTTGGATATTGAGATCATGTTGTGGGTTCTAACAGAGTAGTGCTTGTAAGTAACGACGGTTGTTCAAGAAAACGTATACTCCCTCCGTCCCATAATATAAGGG] [+] EMBL AK063394 [GAACAGGCGGCGATCTCGTCCGGTGGTACCTACTCCGATGGCTCGCGTCCGCCACCGCCATCTCCTCTTGCTCGTCGCCGCCGTCGCCGCCGCCGCCTCCGCGCTCCTCCCGTGCGCCTCCGCGGTCCGCCCGTTCGTGCTCGTCCTCTCCCGTGACGACTTCCTCAAGGACACCGCCGGCGCGCATCCCTCCCTCCCATCAGCCGACGCCGACTCCGACGAGTGGGACGACTTCGACGACGAGTCCCCCGCCACCGACCCCCTCCTCTCCCCGTCCTCCTGGGTCCCCCTCCTCGACCCCGCCAGCGCCTCCCCTTCGGGCGACGAGCCGGACTCGCCGTCCGATGCGCTCTTCGTCGCTGGCGTGCGGGCGATGCTCTCCGCGGCCTCGGCGGGGGATGACGCGGCGTTCGCCACCGCAGCGGCGCAGATCGAGGCCGCAGCTACGGGGGGGCACCCCGGCGCGCAGTCCGCTCTCGCGTTCCTCTCCGGCGCAGGGATGACGCGCCCGGCGTCCCGCTCGCGCGCCTTCCTGCTTCACAAATTCGCCGCCGACGCAGGAGACCTCCAGTCTAAGATGGCTCTCGCCTACTCCTTCTTCCGCCAGGAGATGTATGAAGAAGCAGTCACACTTTATGCTGAACTTGCAGAGGCTGCGCTTACAAGCTCCTTGATCTCGAAGGAGCCTCCAGTGATTGAACCAGTCAGGTTACACAGTGGGACCGAAGAAAACAAGGAAGCCTTGAGGAAGTCTCGAGGCGAGGATGATGAAGATTTTCAAATCACAGAGTACCAGGCACAACGAGGCAATACTGTTGCAATGCACAAATTAGGGCTTCTGTATTACTATGGCCTACGAGGAGTTAGACGTGATTATGGGAAAGCATATCATTGGTTTTCAAAGGCTGTGGAGAAAGGCGATACACGGGCAATGGAGCTTCTCGGAGAGATCTATGCTAGAGGTGCTGGAGTTGAAAGGAACTACACTGAAGCATACAAGTGGTTGACACTTGCAGCAAAGCAGCAACAATACTCAGCTTACAATGGACTGGGTTATCTCTATGTCAAAGGTTATGGGGTTGAGAAGAAAAACTTGACAAAAGCAAAGGAATTTTTTGAAATTGCAGCTGAGCATAAGGAACATGGGGGTTATTATAACCTTGGCGTCTTGTATCTCAAGGGTATTGGAGTAAAGAGGGATGTGATGACAGCATGCAATTTCTTTCTTCGAGCAGTTAATGCTGGGCAACCAAAAGCTATTTATCAAGTGGCAAAGTTGTTCCAGAAAGGTGTTGGTCTTAAGAGGAATCTCCAAATGGCGGCAGTGATGTACAAATCTGTTGCTGAGAGGGGCCCCTGGAGCTCACTTTCTAGATGGGCTCTGGAATCTTATTTGAAAGGTGACATAGGGAAAGCATTACTCCTGTATTCTAGAATGGCGGATCTTGGATATGAGGTTGCACAAAGCAATGCTGCCTGGATTCTTGATAGGTATGGCGATGAAAGTATTTGCATGGGAGAATCTGGCTTCTGTACAGATATGGAAAGACATCTCCGTGCACATGCTCTGTGGTGGCAAGCATCCGAGCAGGGTAACGAACATGCTGCCTTGTTAATTGGTGACGCCTACTACTATGGCCGGGGTGTTGGCAGGGATTACGAGCGTGCAGCCGAGGCATATATGCATGCGCAATCACAATCTAATGCTCAGGCCATGTTTAACCTTGGTTATATGCATGAGCATGGCCATGGACTTCCCCTTGACTTGCACCTGGCAAAAAGATATTATGATCAGGCTGTTGAGGTGGATCCAGCAGCTAAGCTCCCTGTCATGCTTGCACTAACAAGTTTATGGATAAGGAAGAACTATGATGGAAGCTTTTTGGTTCATTTTATTGATTCACTGCCGGAGGTATATCCTGTAGTTGAGGAATGGGTGGAGGATGTTCTTATGGATGAGGGGAACGCAACAATATTTACTCTCTTCGCTTGCCTTGTAACTGTCCTATATTTGCGAGAGCGTCAGAGGCGTCAAGCTGCGGCCGCCAACCCTCAACAGCCTGATGGTGCACCCATCTAATTTCAACCTTTGCATCATGATGCTGGGATTGAAGTGGACGTTAAGCTTGAGGTACATAGTCATTTATTCTCAGCCATATCATACCATCAAAGTTTTGTTTGATGTCTGAAGTGTTAATGGAATGACAACGTCCATACTGTCATACTGGAAAAGCGGGTCCTTCAACTGCAAAATGCTGATGGCTTTCTGAGGTTAAAAATCGGGGTTTAAAATGATAGCTCTCCTTGACATCTATGTACACTAAAATTGACTAGGATAAGAACTGATCATGACTGTTGGATATTGAGATCATGTTGTGGGTTCTAACAGAGTAGTGCTTGTAAGTAACGACGGTTGTTCAAGAAAACGTATACTCCCTCCGTCCCATAATATAAGGG] consensusID : consensus_164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [CTGATCATGACTGTTGGATATTGAGATCATGTTGTGGGTTCTAACAGAGTAGTGCTTGTAAGTAACGACGGAGGGAGTATTTAAAAAGGCTATCTTTCTTGGCTTTTGCATATGGGATGCATTTCTGTTGACGGGGCATGCACTGCAATCAGTCCGGCTCTCAACTTTTCATGGTCAACAACCTGACGACACAATTGTGTGACTAGAGAAGCGTGTTAGTGGGTAGAAGTTCAAATTTTACCCGTGCTAAGTTGTGTTGGTTGATAAATGATTGTTTTTTTTTTCTCAAATAAGACTGTTAGTTTGTTGCCGTCTTGCAGACTTGTACTTTTATCATCCCCCTGCATTAGGAAAGGGTGAATAAACATCTGTAGTAATACATAAAATGAATAATCTTTTCAGG] [+] EMBL AK109167 [CTGATCATGACTGTTGGATATTGAGATCATGTTGTGGGTTCTAACAGAGTAGTGCTTGTAAGTAACGACGGAGGGAGTATTTAAAAAGGCTATCTTTCTTGGCTTTTGCATATGGGATGCATTTCTGTTGACGGGGCATGCACTGCAATCAGTCCGGCTCTCAACTTTTCATGGTCAACAACCTGACGACACAATTGTGTGACTAGAGAAGCGTGTTAGTGGGTAGAAGTTCAAATTTTACCCGTGCTAAGTTGTGTTGGTTGATAAATGATTGTTTTTTTTTTCTCAAATAAGACTGTTAGTTTGTTGCCGTCTTGCAGACTTGTACTTTTATCATCCCCCTGCATTAGGAAAGGGTGAATAAACATCTGTAGTAATACATAAAATGAATAATCTTTTCAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_164#0 GAACAGGCGGCGATCTCGTCCGGTGGTACCTACTCCGATGGCTCGCGTCCGCCACCGCCA 60 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TCTCCTCTTGCTCGTCGCCGCCGTCGCCGCCGCCGCCTCCGCGCTCCTCCCGTGCGCCTC 120 consensus_164#1 ------------------------------------------------------------ consensus_164#0 CGCGGTCCGCCCGTTCGTGCTCGTCCTCTCCCGTGACGACTTCCTCAAGGACACCGCCGG 180 consensus_164#1 ------------------------------------------------------------ consensus_164#0 CGCGCATCCCTCCCTCCCATCAGCCGACGCCGACTCCGACGAGTGGGACGACTTCGACGA 240 consensus_164#1 ------------------------------------------------------------ consensus_164#0 CGAGTCCCCCGCCACCGACCCCCTCCTCTCCCCGTCCTCCTGGGTCCCCCTCCTCGACCC 300 consensus_164#1 ------------------------------------------------------------ consensus_164#0 CGCCAGCGCCTCCCCTTCGGGCGACGAGCCGGACTCGCCGTCCGATGCGCTCTTCGTCGC 360 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TGGCGTGCGGGCGATGCTCTCCGCGGCCTCGGCGGGGGATGACGCGGCGTTCGCCACCGC 420 consensus_164#1 ------------------------------------------------------------ consensus_164#0 AGCGGCGCAGATCGAGGCCGCAGCTACGGGGGGGCACCCCGGCGCGCAGTCCGCTCTCGC 480 consensus_164#1 ------------------------------------------------------------ consensus_164#0 GTTCCTCTCCGGCGCAGGGATGACGCGCCCGGCGTCCCGCTCGCGCGCCTTCCTGCTTCA 540 consensus_164#1 ------------------------------------------------------------ consensus_164#0 CAAATTCGCCGCCGACGCAGGAGACCTCCAGTCTAAGATGGCTCTCGCCTACTCCTTCTT 600 consensus_164#1 ------------------------------------------------------------ consensus_164#0 CCGCCAGGAGATGTATGAAGAAGCAGTCACACTTTATGCTGAACTTGCAGAGGCTGCGCT 660 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TACAAGCTCCTTGATCTCGAAGGAGCCTCCAGTGATTGAACCAGTCAGGTTACACAGTGG 720 consensus_164#1 ------------------------------------------------------------ consensus_164#0 GACCGAAGAAAACAAGGAAGCCTTGAGGAAGTCTCGAGGCGAGGATGATGAAGATTTTCA 780 consensus_164#1 ------------------------------------------------------------ consensus_164#0 AATCACAGAGTACCAGGCACAACGAGGCAATACTGTTGCAATGCACAAATTAGGGCTTCT 840 consensus_164#1 ------------------------------------------------------------ consensus_164#0 GTATTACTATGGCCTACGAGGAGTTAGACGTGATTATGGGAAAGCATATCATTGGTTTTC 900 consensus_164#1 ------------------------------------------------------------ consensus_164#0 AAAGGCTGTGGAGAAAGGCGATACACGGGCAATGGAGCTTCTCGGAGAGATCTATGCTAG 960 consensus_164#1 ------------------------------------------------------------ consensus_164#0 AGGTGCTGGAGTTGAAAGGAACTACACTGAAGCATACAAGTGGTTGACACTTGCAGCAAA 1020 consensus_164#1 ------------------------------------------------------------ consensus_164#0 GCAGCAACAATACTCAGCTTACAATGGACTGGGTTATCTCTATGTCAAAGGTTATGGGGT 1080 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TGAGAAGAAAAACTTGACAAAAGCAAAGGAATTTTTTGAAATTGCAGCTGAGCATAAGGA 1140 consensus_164#1 ------------------------------------------------------------ consensus_164#0 ACATGGGGGTTATTATAACCTTGGCGTCTTGTATCTCAAGGGTATTGGAGTAAAGAGGGA 1200 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TGTGATGACAGCATGCAATTTCTTTCTTCGAGCAGTTAATGCTGGGCAACCAAAAGCTAT 1260 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TTATCAAGTGGCAAAGTTGTTCCAGAAAGGTGTTGGTCTTAAGAGGAATCTCCAAATGGC 1320 consensus_164#1 ------------------------------------------------------------ consensus_164#0 GGCAGTGATGTACAAATCTGTTGCTGAGAGGGGCCCCTGGAGCTCACTTTCTAGATGGGC 1380 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TCTGGAATCTTATTTGAAAGGTGACATAGGGAAAGCATTACTCCTGTATTCTAGAATGGC 1440 consensus_164#1 ------------------------------------------------------------ consensus_164#0 GGATCTTGGATATGAGGTTGCACAAAGCAATGCTGCCTGGATTCTTGATAGGTATGGCGA 1500 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TGAAAGTATTTGCATGGGAGAATCTGGCTTCTGTACAGATATGGAAAGACATCTCCGTGC 1560 consensus_164#1 ------------------------------------------------------------ consensus_164#0 ACATGCTCTGTGGTGGCAAGCATCCGAGCAGGGTAACGAACATGCTGCCTTGTTAATTGG 1620 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TGACGCCTACTACTATGGCCGGGGTGTTGGCAGGGATTACGAGCGTGCAGCCGAGGCATA 1680 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TATGCATGCGCAATCACAATCTAATGCTCAGGCCATGTTTAACCTTGGTTATATGCATGA 1740 consensus_164#1 ------------------------------------------------------------ consensus_164#0 GCATGGCCATGGACTTCCCCTTGACTTGCACCTGGCAAAAAGATATTATGATCAGGCTGT 1800 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TGAGGTGGATCCAGCAGCTAAGCTCCCTGTCATGCTTGCACTAACAAGTTTATGGATAAG 1860 consensus_164#1 ------------------------------------------------------------ consensus_164#0 GAAGAACTATGATGGAAGCTTTTTGGTTCATTTTATTGATTCACTGCCGGAGGTATATCC 1920 consensus_164#1 --------------------------CTGATCATGACTGTTGGATATTGAGATCATGT-- 32 * ** * ** * * ** * consensus_164#0 TGTAGTTGAGGAATGGGTGGAGGATGTTCTTATGGATGAGGGGAACGC--AACAATATTT 1978 consensus_164#1 TGTGGGTTCTAACAGAGTAGTGCTTGTAAGTAACGACGGAGGGAGTATTTAAAAAGGCTA 92 *** * * * * ** * * *** ** ** * **** ** ** * consensus_164#0 ACTCTCTTCGCTTGCCTTGTAACTGTCCTATATTTGCGAGAGCGTCAGAGGCGTCAAGCT 2038 consensus_164#1 TCTTTCTTGGCTT---TTGCATATGGGATGCATTTCTGTTGACGGGGCATGCACTGCAAT 149 ** **** **** *** * ** * **** * ** * ** * consensus_164#0 GCGGCCGCCAACCCTCAACAGCCTGATGGTGCACCCATCTAATTTCAACCTTTGCATCAT 2098 consensus_164#1 CAGTCCG---GCTCTCAACT-TTTCATGGT-CAACAACCTGACGACA-CAATTGTGTGAC 203 * *** * ****** * ***** ** * * ** * ** * *** * * consensus_164#0 GATGCTGGGATTGAAGTGGACGTTAAGCTTGAGGTACATAGTCATTTATTCTCAGCCAT- 2157 consensus_164#1 TAGAGAAGCGTGTTAGTGGGTAG-AAGTTCAAATTTTACCCGTGCTAAGTTGTGTTGGTT 262 * * * ***** *** * * * * * * * * consensus_164#0 ATCATACCATCAAAGTTTTGTTTGATGTCTGAAGTGTTAATGGAATGACAACGTCCATAC 2217 consensus_164#1 GATAAATGATTGTTTTTTTTTTCTCAAATAAGACTGTTAGTTTGTTGCCGTCTTGCAGAC 322 * * ** **** ** * ***** * ** * * * ** ** consensus_164#0 TGTCATACTGGAAAAGCGGGTCCTTCAACTGCAAAATGCTGATGGCTTTCTGAGGTTAAA 2277 consensus_164#1 TTGTACTTTTATCATCC---CCCTGCATTAGGAAAGGGTGAATAAACATCTGTAGTAATA 379 * * * * * *** ** * *** * ** **** ** * * consensus_164#0 AATCGGGGTTTAAAATGATAGCTCTCCTTGACATCTATGTACACTAAAATTGACTAGGAT 2337 consensus_164#1 CAT--------AAAATGAATAATCTTTTCAGG---------------------------- 403 ** ******* *** * consensus_164#0 AAGAACTGATCATGACTGTTGGATATTGAGATCATGTTGTGGGTTCTAACAGAGTAGTGC 2397 consensus_164#1 ------------------------------------------------------------ consensus_164#0 TTGTAAGTAACGACGGTTGTTCAAGAAAACGTATACTCCCTCCGTCCCATAATATAAGGG 2457 consensus_164#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||