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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2457 fasta sequence
[GAACAGGCGGCGATCTCGTCCGGTGGTACCTACTCCGATGGCTCGCGTCCGCCACCGCCATCTCCTCTTGCTCGTCGCCGCCGTCGCCGCCGCCGCCTCCGCGCTCCTCCCGTGCGCCTCCGCGGTCCGCCCGTTCGTGCTCGTCCTCTCCCGTGACGACTTCCTCAAGGACACCGCCGGCGCGCATCCCTCCCTCCCATCAGCCGACGCCGACTCCGACGAGTGGGACGACTTCGACGACGAGTCCCCCGCCACCGACCCCCTCCTCTCCCCGTCCTCCTGGGTCCCCCTCCTCGACCCCGCCAGCGCCTCCCCTTCGGGCGACGAGCCGGACTCGCCGTCCGATGCGCTCTTCGTCGCTGGCGTGCGGGCGATGCTCTCCGCGGCCTCGGCGGGGGATGACGCGGCGTTCGCCACCGCAGCGGCGCAGATCGAGGCCGCAGCTACGGGGGGGCACCCCGGCGCGCAGTCCGCTCTCGCGTTCCTCTCCGGCGCAGGGATGACGCGCCCGGCGTCCCGCTCGCGCGCCTTCCTGCTTCACAAATTCGCCGCCGACGCAGGAGACCTCCAGTCTAAGATGGCTCTCGCCTACTCCTTCTTCCGCCAGGAGATGTATGAAGAAGCAGTCACACTTTATGCTGAACTTGCAGAGGCTGCGCTTACAAGCTCCTTGATCTCGAAGGAGCCTCCAGTGATTGAACCAGTCAGGTTACACAGTGGGACCGAAGAAAACAAGGAAGCCTTGAGGAAGTCTCGAGGCGAGGATGATGAAGATTTTCAAATCACAGAGTACCAGGCACAACGAGGCAATACTGTTGCAATGCACAAATTAGGGCTTCTGTATTACTATGGCCTACGAGGAGTTAGACGTGATTATGGGAAAGCATATCATTGGTTTTCAAAGGCTGTGGAGAAAGGCGATACACGGGCAATGGAGCTTCTCGGAGAGATCTATGCTAGAGGTGCTGGAGTTGAAAGGAACTACACTGAAGCATACAAGTGGTTGACACTTGCAGCAAAGCAGCAACAATACTCAGCTTACAATGGACTGGGTTATCTCTATGTCAAAGGTTATGGGGTTGAGAAGAAAAACTTGACAAAAGCAAAGGAATTTTTTGAAATTGCAGCTGAGCATAAGGAACATGGGGGTTATTATAACCTTGGCGTCTTGTATCTCAAGGGTATTGGAGTAAAGAGGGATGTGATGACAGCATGCAATTTCTTTCTTCGAGCAGTTAATGCTGGGCAACCAAAAGCTATTTATCAAGTGGCAAAGTTGTTCCAGAAAGGTGTTGGTCTTAAGAGGAATCTCCAAATGGCGGCAGTGATGTACAAATCTGTTGCTGAGAGGGGCCCCTGGAGCTCACTTTCTAGATGGGCTCTGGAATCTTATTTGAAAGGTGACATAGGGAAAGCATTACTCCTGTATTCTAGAATGGCGGATCTTGGATATGAGGTTGCACAAAGCAATGCTGCCTGGATTCTTGATAGGTATGGCGATGAAAGTATTTGCATGGGAGAATCTGGCTTCTGTACAGATATGGAAAGACATCTCCGTGCACATGCTCTGTGGTGGCAAGCATCCGAGCAGGGTAACGAACATGCTGCCTTGTTAATTGGTGACGCCTACTACTATGGCCGGGGTGTTGGCAGGGATTACGAGCGTGCAGCCGAGGCATATATGCATGCGCAATCACAATCTAATGCTCAGGCCATGTTTAACCTTGGTTATATGCATGAGCATGGCCATGGACTTCCCCTTGACTTGCACCTGGCAAAAAGATATTATGATCAGGCTGTTGAGGTGGATCCAGCAGCTAAGCTCCCTGTCATGCTTGCACTAACAAGTTTATGGATAAGGAAGAACTATGATGGAAGCTTTTTGGTTCATTTTATTGATTCACTGCCGGAGGTATATCCTGTAGTTGAGGAATGGGTGGAGGATGTTCTTATGGATGAGGGGAACGCAACAATATTTACTCTCTTCGCTTGCCTTGTAACTGTCCTATATTTGCGAGAGCGTCAGAGGCGTCAAGCTGCGGCCGCCAACCCTCAACAGCCTGATGGTGCACCCATCTAATTTCAACCTTTGCATCATGATGCTGGGATTGAAGTGGACGTTAAGCTTGAGGTACATAGTCATTTATTCTCAGCCATATCATACCATCAAAGTTTTGTTTGATGTCTGAAGTGTTAATGGAATGACAACGTCCATACTGTCATACTGGAAAAGCGGGTCCTTCAACTGCAAAATGCTGATGGCTTTCTGAGGTTAAAAATCGGGGTTTAAAATGATAGCTCTCCTTGACATCTATGTACACTAAAATTGACTAGGATAAGAACTGATCATGACTGTTGGATATTGAGATCATGTTGTGGGTTCTAACAGAGTAGTGCTTGTAAGTAACGACGGTTGTTCAAGAAAACGTATACTCCCTCCGTCCCATAATATAAGGG]
[+] EMBL AK063394 [GAACAGGCGGCGATCTCGTCCGGTGGTACCTACTCCGATGGCTCGCGTCCGCCACCGCCATCTCCTCTTGCTCGTCGCCGCCGTCGCCGCCGCCGCCTCCGCGCTCCTCCCGTGCGCCTCCGCGGTCCGCCCGTTCGTGCTCGTCCTCTCCCGTGACGACTTCCTCAAGGACACCGCCGGCGCGCATCCCTCCCTCCCATCAGCCGACGCCGACTCCGACGAGTGGGACGACTTCGACGACGAGTCCCCCGCCACCGACCCCCTCCTCTCCCCGTCCTCCTGGGTCCCCCTCCTCGACCCCGCCAGCGCCTCCCCTTCGGGCGACGAGCCGGACTCGCCGTCCGATGCGCTCTTCGTCGCTGGCGTGCGGGCGATGCTCTCCGCGGCCTCGGCGGGGGATGACGCGGCGTTCGCCACCGCAGCGGCGCAGATCGAGGCCGCAGCTACGGGGGGGCACCCCGGCGCGCAGTCCGCTCTCGCGTTCCTCTCCGGCGCAGGGATGACGCGCCCGGCGTCCCGCTCGCGCGCCTTCCTGCTTCACAAATTCGCCGCCGACGCAGGAGACCTCCAGTCTAAGATGGCTCTCGCCTACTCCTTCTTCCGCCAGGAGATGTATGAAGAAGCAGTCACACTTTATGCTGAACTTGCAGAGGCTGCGCTTACAAGCTCCTTGATCTCGAAGGAGCCTCCAGTGATTGAACCAGTCAGGTTACACAGTGGGACCGAAGAAAACAAGGAAGCCTTGAGGAAGTCTCGAGGCGAGGATGATGAAGATTTTCAAATCACAGAGTACCAGGCACAACGAGGCAATACTGTTGCAATGCACAAATTAGGGCTTCTGTATTACTATGGCCTACGAGGAGTTAGACGTGATTATGGGAAAGCATATCATTGGTTTTCAAAGGCTGTGGAGAAAGGCGATACACGGGCAATGGAGCTTCTCGGAGAGATCTATGCTAGAGGTGCTGGAGTTGAAAGGAACTACACTGAAGCATACAAGTGGTTGACACTTGCAGCAAAGCAGCAACAATACTCAGCTTACAATGGACTGGGTTATCTCTATGTCAAAGGTTATGGGGTTGAGAAGAAAAACTTGACAAAAGCAAAGGAATTTTTTGAAATTGCAGCTGAGCATAAGGAACATGGGGGTTATTATAACCTTGGCGTCTTGTATCTCAAGGGTATTGGAGTAAAGAGGGATGTGATGACAGCATGCAATTTCTTTCTTCGAGCAGTTAATGCTGGGCAACCAAAAGCTATTTATCAAGTGGCAAAGTTGTTCCAGAAAGGTGTTGGTCTTAAGAGGAATCTCCAAATGGCGGCAGTGATGTACAAATCTGTTGCTGAGAGGGGCCCCTGGAGCTCACTTTCTAGATGGGCTCTGGAATCTTATTTGAAAGGTGACATAGGGAAAGCATTACTCCTGTATTCTAGAATGGCGGATCTTGGATATGAGGTTGCACAAAGCAATGCTGCCTGGATTCTTGATAGGTATGGCGATGAAAGTATTTGCATGGGAGAATCTGGCTTCTGTACAGATATGGAAAGACATCTCCGTGCACATGCTCTGTGGTGGCAAGCATCCGAGCAGGGTAACGAACATGCTGCCTTGTTAATTGGTGACGCCTACTACTATGGCCGGGGTGTTGGCAGGGATTACGAGCGTGCAGCCGAGGCATATATGCATGCGCAATCACAATCTAATGCTCAGGCCATGTTTAACCTTGGTTATATGCATGAGCATGGCCATGGACTTCCCCTTGACTTGCACCTGGCAAAAAGATATTATGATCAGGCTGTTGAGGTGGATCCAGCAGCTAAGCTCCCTGTCATGCTTGCACTAACAAGTTTATGGATAAGGAAGAACTATGATGGAAGCTTTTTGGTTCATTTTATTGATTCACTGCCGGAGGTATATCCTGTAGTTGAGGAATGGGTGGAGGATGTTCTTATGGATGAGGGGAACGCAACAATATTTACTCTCTTCGCTTGCCTTGTAACTGTCCTATATTTGCGAGAGCGTCAGAGGCGTCAAGCTGCGGCCGCCAACCCTCAACAGCCTGATGGTGCACCCATCTAATTTCAACCTTTGCATCATGATGCTGGGATTGAAGTGGACGTTAAGCTTGAGGTACATAGTCATTTATTCTCAGCCATATCATACCATCAAAGTTTTGTTTGATGTCTGAAGTGTTAATGGAATGACAACGTCCATACTGTCATACTGGAAAAGCGGGTCCTTCAACTGCAAAATGCTGATGGCTTTCTGAGGTTAAAAATCGGGGTTTAAAATGATAGCTCTCCTTGACATCTATGTACACTAAAATTGACTAGGATAAGAACTGATCATGACTGTTGGATATTGAGATCATGTTGTGGGTTCTAACAGAGTAGTGCTTGTAAGTAACGACGGTTGTTCAAGAAAACGTATACTCCCTCCGTCCCATAATATAAGGG]
consensusID : consensus_164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence
[CTGATCATGACTGTTGGATATTGAGATCATGTTGTGGGTTCTAACAGAGTAGTGCTTGTAAGTAACGACGGAGGGAGTATTTAAAAAGGCTATCTTTCTTGGCTTTTGCATATGGGATGCATTTCTGTTGACGGGGCATGCACTGCAATCAGTCCGGCTCTCAACTTTTCATGGTCAACAACCTGACGACACAATTGTGTGACTAGAGAAGCGTGTTAGTGGGTAGAAGTTCAAATTTTACCCGTGCTAAGTTGTGTTGGTTGATAAATGATTGTTTTTTTTTTCTCAAATAAGACTGTTAGTTTGTTGCCGTCTTGCAGACTTGTACTTTTATCATCCCCCTGCATTAGGAAAGGGTGAATAAACATCTGTAGTAATACATAAAATGAATAATCTTTTCAGG]
[+] EMBL AK109167 [CTGATCATGACTGTTGGATATTGAGATCATGTTGTGGGTTCTAACAGAGTAGTGCTTGTAAGTAACGACGGAGGGAGTATTTAAAAAGGCTATCTTTCTTGGCTTTTGCATATGGGATGCATTTCTGTTGACGGGGCATGCACTGCAATCAGTCCGGCTCTCAACTTTTCATGGTCAACAACCTGACGACACAATTGTGTGACTAGAGAAGCGTGTTAGTGGGTAGAAGTTCAAATTTTACCCGTGCTAAGTTGTGTTGGTTGATAAATGATTGTTTTTTTTTTCTCAAATAAGACTGTTAGTTTGTTGCCGTCTTGCAGACTTGTACTTTTATCATCCCCCTGCATTAGGAAAGGGTGAATAAACATCTGTAGTAATACATAAAATGAATAATCTTTTCAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_164#0 GAACAGGCGGCGATCTCGTCCGGTGGTACCTACTCCGATGGCTCGCGTCCGCCACCGCCA 60
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TCTCCTCTTGCTCGTCGCCGCCGTCGCCGCCGCCGCCTCCGCGCTCCTCCCGTGCGCCTC 120
consensus_164#1 ------------------------------------------------------------
consensus_164#0 CGCGGTCCGCCCGTTCGTGCTCGTCCTCTCCCGTGACGACTTCCTCAAGGACACCGCCGG 180
consensus_164#1 ------------------------------------------------------------
consensus_164#0 CGCGCATCCCTCCCTCCCATCAGCCGACGCCGACTCCGACGAGTGGGACGACTTCGACGA 240
consensus_164#1 ------------------------------------------------------------
consensus_164#0 CGAGTCCCCCGCCACCGACCCCCTCCTCTCCCCGTCCTCCTGGGTCCCCCTCCTCGACCC 300
consensus_164#1 ------------------------------------------------------------
consensus_164#0 CGCCAGCGCCTCCCCTTCGGGCGACGAGCCGGACTCGCCGTCCGATGCGCTCTTCGTCGC 360
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TGGCGTGCGGGCGATGCTCTCCGCGGCCTCGGCGGGGGATGACGCGGCGTTCGCCACCGC 420
consensus_164#1 ------------------------------------------------------------
consensus_164#0 AGCGGCGCAGATCGAGGCCGCAGCTACGGGGGGGCACCCCGGCGCGCAGTCCGCTCTCGC 480
consensus_164#1 ------------------------------------------------------------
consensus_164#0 GTTCCTCTCCGGCGCAGGGATGACGCGCCCGGCGTCCCGCTCGCGCGCCTTCCTGCTTCA 540
consensus_164#1 ------------------------------------------------------------
consensus_164#0 CAAATTCGCCGCCGACGCAGGAGACCTCCAGTCTAAGATGGCTCTCGCCTACTCCTTCTT 600
consensus_164#1 ------------------------------------------------------------
consensus_164#0 CCGCCAGGAGATGTATGAAGAAGCAGTCACACTTTATGCTGAACTTGCAGAGGCTGCGCT 660
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TACAAGCTCCTTGATCTCGAAGGAGCCTCCAGTGATTGAACCAGTCAGGTTACACAGTGG 720
consensus_164#1 ------------------------------------------------------------
consensus_164#0 GACCGAAGAAAACAAGGAAGCCTTGAGGAAGTCTCGAGGCGAGGATGATGAAGATTTTCA 780
consensus_164#1 ------------------------------------------------------------
consensus_164#0 AATCACAGAGTACCAGGCACAACGAGGCAATACTGTTGCAATGCACAAATTAGGGCTTCT 840
consensus_164#1 ------------------------------------------------------------
consensus_164#0 GTATTACTATGGCCTACGAGGAGTTAGACGTGATTATGGGAAAGCATATCATTGGTTTTC 900
consensus_164#1 ------------------------------------------------------------
consensus_164#0 AAAGGCTGTGGAGAAAGGCGATACACGGGCAATGGAGCTTCTCGGAGAGATCTATGCTAG 960
consensus_164#1 ------------------------------------------------------------
consensus_164#0 AGGTGCTGGAGTTGAAAGGAACTACACTGAAGCATACAAGTGGTTGACACTTGCAGCAAA 1020
consensus_164#1 ------------------------------------------------------------
consensus_164#0 GCAGCAACAATACTCAGCTTACAATGGACTGGGTTATCTCTATGTCAAAGGTTATGGGGT 1080
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TGAGAAGAAAAACTTGACAAAAGCAAAGGAATTTTTTGAAATTGCAGCTGAGCATAAGGA 1140
consensus_164#1 ------------------------------------------------------------
consensus_164#0 ACATGGGGGTTATTATAACCTTGGCGTCTTGTATCTCAAGGGTATTGGAGTAAAGAGGGA 1200
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TGTGATGACAGCATGCAATTTCTTTCTTCGAGCAGTTAATGCTGGGCAACCAAAAGCTAT 1260
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TTATCAAGTGGCAAAGTTGTTCCAGAAAGGTGTTGGTCTTAAGAGGAATCTCCAAATGGC 1320
consensus_164#1 ------------------------------------------------------------
consensus_164#0 GGCAGTGATGTACAAATCTGTTGCTGAGAGGGGCCCCTGGAGCTCACTTTCTAGATGGGC 1380
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TCTGGAATCTTATTTGAAAGGTGACATAGGGAAAGCATTACTCCTGTATTCTAGAATGGC 1440
consensus_164#1 ------------------------------------------------------------
consensus_164#0 GGATCTTGGATATGAGGTTGCACAAAGCAATGCTGCCTGGATTCTTGATAGGTATGGCGA 1500
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TGAAAGTATTTGCATGGGAGAATCTGGCTTCTGTACAGATATGGAAAGACATCTCCGTGC 1560
consensus_164#1 ------------------------------------------------------------
consensus_164#0 ACATGCTCTGTGGTGGCAAGCATCCGAGCAGGGTAACGAACATGCTGCCTTGTTAATTGG 1620
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TGACGCCTACTACTATGGCCGGGGTGTTGGCAGGGATTACGAGCGTGCAGCCGAGGCATA 1680
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TATGCATGCGCAATCACAATCTAATGCTCAGGCCATGTTTAACCTTGGTTATATGCATGA 1740
consensus_164#1 ------------------------------------------------------------
consensus_164#0 GCATGGCCATGGACTTCCCCTTGACTTGCACCTGGCAAAAAGATATTATGATCAGGCTGT 1800
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TGAGGTGGATCCAGCAGCTAAGCTCCCTGTCATGCTTGCACTAACAAGTTTATGGATAAG 1860
consensus_164#1 ------------------------------------------------------------
consensus_164#0 GAAGAACTATGATGGAAGCTTTTTGGTTCATTTTATTGATTCACTGCCGGAGGTATATCC 1920
consensus_164#1 --------------------------CTGATCATGACTGTTGGATATTGAGATCATGT-- 32
* ** * ** * * ** *
consensus_164#0 TGTAGTTGAGGAATGGGTGGAGGATGTTCTTATGGATGAGGGGAACGC--AACAATATTT 1978
consensus_164#1 TGTGGGTTCTAACAGAGTAGTGCTTGTAAGTAACGACGGAGGGAGTATTTAAAAAGGCTA 92
*** * * * * ** * * *** ** ** * **** ** ** *
consensus_164#0 ACTCTCTTCGCTTGCCTTGTAACTGTCCTATATTTGCGAGAGCGTCAGAGGCGTCAAGCT 2038
consensus_164#1 TCTTTCTTGGCTT---TTGCATATGGGATGCATTTCTGTTGACGGGGCATGCACTGCAAT 149
** **** **** *** * ** * **** * ** * ** *
consensus_164#0 GCGGCCGCCAACCCTCAACAGCCTGATGGTGCACCCATCTAATTTCAACCTTTGCATCAT 2098
consensus_164#1 CAGTCCG---GCTCTCAACT-TTTCATGGT-CAACAACCTGACGACA-CAATTGTGTGAC 203
* *** * ****** * ***** ** * * ** * ** * *** * *
consensus_164#0 GATGCTGGGATTGAAGTGGACGTTAAGCTTGAGGTACATAGTCATTTATTCTCAGCCAT- 2157
consensus_164#1 TAGAGAAGCGTGTTAGTGGGTAG-AAGTTCAAATTTTACCCGTGCTAAGTTGTGTTGGTT 262
* * * ***** *** * * * * * * * *
consensus_164#0 ATCATACCATCAAAGTTTTGTTTGATGTCTGAAGTGTTAATGGAATGACAACGTCCATAC 2217
consensus_164#1 GATAAATGATTGTTTTTTTTTTCTCAAATAAGACTGTTAGTTTGTTGCCGTCTTGCAGAC 322
* * ** **** ** * ***** * ** * * * ** **
consensus_164#0 TGTCATACTGGAAAAGCGGGTCCTTCAACTGCAAAATGCTGATGGCTTTCTGAGGTTAAA 2277
consensus_164#1 TTGTACTTTTATCATCC---CCCTGCATTAGGAAAGGGTGAATAAACATCTGTAGTAATA 379
* * * * * *** ** * *** * ** **** ** * *
consensus_164#0 AATCGGGGTTTAAAATGATAGCTCTCCTTGACATCTATGTACACTAAAATTGACTAGGAT 2337
consensus_164#1 CAT--------AAAATGAATAATCTTTTCAGG---------------------------- 403
** ******* *** *
consensus_164#0 AAGAACTGATCATGACTGTTGGATATTGAGATCATGTTGTGGGTTCTAACAGAGTAGTGC 2397
consensus_164#1 ------------------------------------------------------------
consensus_164#0 TTGTAAGTAACGACGGTTGTTCAAGAAAACGTATACTCCCTCCGTCCCATAATATAAGGG 2457
consensus_164#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||